Wall clock time and date at job start Tue Mar 31 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99686 * 2 1 4 4 C 1.52998 * 109.46943 * 204.49186 * 3 2 1 5 5 N 1.46498 * 109.47458 * 300.00374 * 4 3 2 6 6 C 1.34776 * 119.99956 * 179.97438 * 5 4 3 7 7 O 1.21764 * 120.00012 * 0.02562 * 6 5 4 8 8 C 1.46240 * 119.99971 * 179.97438 * 6 5 4 9 9 S 1.75661 * 125.22804 * 0.03180 * 8 6 5 10 10 C 1.75470 * 92.09072 * 179.97438 * 9 8 6 11 11 C 1.32757 * 111.36574 * 359.72871 * 10 9 8 12 12 C 1.39543 * 125.22569 * 179.97438 * 8 6 5 13 13 C 1.40542 * 123.71830 * 0.02562 * 12 8 6 14 14 H 1.07991 * 119.99797 * 336.45411 * 13 12 8 15 15 C 1.40304 * 119.99773 * 156.44999 * 13 12 8 16 16 N 1.30636 * 120.00562 * 338.71677 * 15 13 12 17 17 Si 1.86800 * 119.99739 * 158.72550 * 15 13 12 18 18 H 1.48505 * 109.47190 * 179.97438 * 17 15 13 19 19 H 1.48505 * 109.46902 * 299.99365 * 17 15 13 20 20 H 1.48494 * 109.47519 * 59.99617 * 17 15 13 21 21 O 1.42904 * 109.46547 * 84.49741 * 3 2 1 22 22 C 1.42897 * 113.99907 * 291.80042 * 21 3 2 23 23 H 1.09004 * 109.46691 * 181.12748 * 1 2 3 24 24 H 1.08997 * 109.46506 * 301.11602 * 1 2 3 25 25 H 1.08998 * 109.47460 * 61.12004 * 1 2 3 26 26 H 1.08991 * 109.47403 * 324.49658 * 3 2 1 27 27 H 1.09007 * 109.46785 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.47117 * 60.00643 * 4 3 2 29 29 H 0.96996 * 120.00007 * 0.02562 * 5 4 3 30 30 H 1.08005 * 124.31968 * 179.97438 * 10 9 8 31 31 H 1.08001 * 122.78860 * 180.23225 * 11 10 9 32 32 H 0.97001 * 119.99745 * 354.88062 * 16 15 13 33 33 H 1.08994 * 109.47187 * 73.74521 * 22 21 3 34 34 H 1.09003 * 109.46702 * 193.74519 * 22 21 3 35 35 H 1.09001 * 109.47186 * 313.74211 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4168 1.2375 -0.5980 5 7 4.2454 0.3341 0.2041 6 6 5.5312 0.1176 -0.1371 7 8 6.0042 0.6733 -1.1118 8 6 6.3584 -0.7838 0.6639 9 16 5.8194 -1.6535 2.0918 10 6 7.3939 -2.3959 2.3127 11 6 8.2464 -2.0116 1.3703 12 6 7.6970 -1.0860 0.4108 13 6 8.4278 -0.5513 -0.6640 14 1 7.9119 -0.1921 -1.5421 15 6 9.8276 -0.4842 -0.5961 16 7 10.4275 -0.5132 0.5639 17 14 10.8335 -0.3531 -2.1647 18 1 12.2777 -0.2971 -1.8234 19 1 10.5723 -1.5381 -3.0207 20 1 10.4502 0.8806 -2.8969 21 8 2.0858 1.7931 1.3412 22 6 0.8143 2.0708 1.9312 23 1 -0.3633 -1.0275 0.0202 24 1 -0.3632 0.5311 0.8798 25 1 -0.3634 0.4963 -0.8998 26 1 1.3937 1.9776 -0.5968 27 1 3.8603 2.2333 -0.5976 28 1 3.3591 0.8655 -1.6210 29 1 3.8685 -0.1089 0.9803 30 1 7.6373 -3.0814 3.1110 31 1 9.2676 -2.3605 1.3279 32 1 9.9044 -0.5062 1.3808 33 1 0.3156 1.1334 2.1776 34 1 0.9555 2.6569 2.8393 35 1 0.2021 2.6339 1.2268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159816285.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:11 Heat of formation + Delta-G solvation = -132.355356 kcal Electronic energy + Delta-G solvation = -20287.842529 eV Core-core repulsion = 16990.492502 eV Total energy + Delta-G solvation = -3297.350027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70529 -39.82033 -38.22257 -37.00823 -35.37656 -34.86685 -31.38563 -30.40119 -28.16515 -27.08638 -26.90086 -24.49324 -23.32637 -21.85949 -20.87869 -19.65656 -18.53931 -18.42975 -17.98083 -17.00824 -16.40441 -16.10033 -15.82427 -15.69485 -15.47617 -15.35771 -14.91053 -14.55950 -14.45769 -13.99793 -13.92009 -13.66762 -13.31661 -13.18821 -12.75295 -12.61865 -12.43864 -12.27544 -12.00580 -11.85683 -11.49709 -11.04313 -10.95946 -10.78934 -10.45979 -9.97913 -9.64644 -9.23579 -9.12631 -6.53282 0.20120 1.22044 1.40515 1.48570 1.68814 1.81298 1.91268 2.27215 2.32173 2.50536 2.64639 2.77119 3.17280 3.65565 3.89619 4.20467 4.24496 4.33700 4.42631 4.48017 4.49051 4.53014 4.66019 4.73255 4.91078 4.96949 5.19528 5.34926 5.37886 5.60746 5.87454 5.93084 6.01897 6.03762 6.50774 6.64254 6.92225 7.68145 7.83384 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.022940 B = 0.004629 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.278837 B = 6047.673562 C = 6802.856038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.415 6.415 3 C 0.242 3.758 4 C 0.139 3.861 5 N -0.725 5.725 6 C 0.588 3.412 7 O -0.606 6.606 8 C -0.472 4.472 9 S 0.023 5.977 10 C -0.169 4.169 11 C -0.172 4.172 12 C 0.089 3.911 13 C -0.466 4.466 14 H 0.082 0.918 15 C 0.002 3.998 16 N -0.787 5.787 17 Si 1.121 2.879 18 H -0.257 1.257 19 H -0.258 1.258 20 H -0.268 1.268 21 O -0.415 6.415 22 C 0.015 3.985 23 H 0.096 0.904 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.401 0.599 30 H 0.185 0.815 31 H 0.130 0.870 32 H 0.290 0.710 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.610 1.472 1.832 15.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.336 6.336 3 C 0.147 3.853 4 C 0.015 3.985 5 N -0.378 5.378 6 C 0.385 3.615 7 O -0.492 6.492 8 C -0.591 4.591 9 S 0.280 5.720 10 C -0.303 4.303 11 C -0.205 4.205 12 C 0.078 3.922 13 C -0.497 4.497 14 H 0.100 0.900 15 C -0.217 4.217 16 N -0.409 5.409 17 Si 0.936 3.064 18 H -0.181 1.181 19 H -0.182 1.182 20 H -0.193 1.193 21 O -0.336 6.336 22 C -0.080 4.080 23 H 0.115 0.885 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.236 0.764 30 H 0.202 0.798 31 H 0.148 0.852 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.863 1.709 1.533 15.039 hybrid contribution -0.906 0.018 0.319 0.961 sum -15.769 1.727 1.852 15.971 Atomic orbital electron populations 1.23418 0.78929 1.04681 1.01978 1.88079 1.22248 1.29345 1.93954 1.23606 0.93599 0.83750 0.84328 1.21334 0.87447 0.94754 0.94990 1.45407 1.10520 1.49362 1.32471 1.17035 0.81059 0.80181 0.83232 1.90607 1.73671 1.54093 1.30866 1.22953 1.01173 1.23929 1.11028 1.82526 1.13254 1.48355 1.27851 1.25500 0.96723 1.04847 1.03248 1.21458 1.00655 1.00999 0.97399 1.18372 0.91400 0.90796 0.91639 1.20976 0.94447 1.31916 1.02334 0.89985 1.28792 0.96993 0.89785 1.06157 1.70533 1.41961 1.28125 1.00304 0.82964 0.74863 0.79072 0.69467 1.18088 1.18234 1.19319 1.88099 1.31703 1.83806 1.29981 1.23243 0.84561 1.00846 0.99379 0.88546 0.91541 0.92027 0.87913 0.90755 0.90446 0.76400 0.79787 0.85189 0.89681 0.92488 0.88635 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 10.53 113.37 1.19 1.28 16 2 O -0.42 -11.04 10.27 -126.21 -1.30 -12.34 16 3 C 0.24 6.29 3.04 71.98 0.22 6.51 16 4 C 0.14 4.83 5.78 86.38 0.50 5.33 16 5 N -0.73 -31.25 5.33 -467.46 -2.49 -33.75 16 6 C 0.59 31.42 7.76 86.32 0.67 32.09 16 7 O -0.61 -36.05 14.45 -4.55 -0.07 -36.11 16 8 C -0.47 -25.38 6.51 24.67 0.16 -25.22 16 9 S 0.02 1.01 22.25 -56.49 -1.26 -0.25 16 10 C -0.17 -7.03 11.07 66.64 0.74 -6.29 16 11 C -0.17 -8.38 8.19 22.61 0.19 -8.19 16 12 C 0.09 4.98 5.42 -20.89 -0.11 4.87 16 13 C -0.47 -26.99 8.45 23.33 0.20 -26.80 16 14 H 0.08 5.11 6.11 -2.92 -0.02 5.09 16 15 C 0.00 0.12 5.22 85.37 0.45 0.56 16 16 N -0.79 -41.18 12.50 21.89 0.27 -40.91 16 17 Si 1.12 44.34 29.99 68.60 2.06 46.40 16 18 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 19 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 20 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 21 O -0.41 -11.30 10.36 -126.21 -1.31 -12.61 16 22 C 0.01 0.25 9.60 113.37 1.09 1.34 16 23 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.07 0.85 4.60 -2.39 -0.01 0.84 16 25 H 0.06 0.76 8.11 -2.39 -0.02 0.74 16 26 H 0.10 1.89 7.70 -2.39 -0.02 1.87 16 27 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 28 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 29 H 0.40 16.57 7.30 -92.71 -0.68 15.90 16 30 H 0.18 5.96 8.06 -2.91 -0.02 5.93 16 31 H 0.13 6.25 6.76 -2.91 -0.02 6.23 16 32 H 0.29 15.57 6.20 -92.71 -0.58 14.99 16 33 H 0.06 0.88 6.04 -2.39 -0.01 0.87 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 0.78 7.90 -2.39 -0.02 0.76 16 Total: -1.00 -72.01 309.39 1.84 -70.16 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.65 Total: 33.93 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 5.28 Total: -14.53 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -2.22 Total: -74.65 kcal Atomic # 8 Polarization: -58.39 SS G_CDS: -2.67 Total: -61.06 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.06 Total: 46.40 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -1.26 Total: -0.25 kcal Total: -72.01 1.84 -70.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159816285.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.191 kcal (2) G-P(sol) polarization free energy of solvation -72.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds