Wall clock time and date at job start Tue Mar 31 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29326 * 1 3 3 Si 1.86795 * 120.00067 * 2 1 4 4 H 1.48502 * 109.47061 * 239.99731 * 3 2 1 5 5 H 1.48498 * 109.47197 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47187 * 119.99980 * 3 2 1 7 7 C 1.46804 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99966 * 180.02562 * 7 2 1 9 9 N 1.32780 * 120.00133 * 0.02562 * 7 2 1 10 10 C 1.39012 * 120.00026 * 180.27535 * 9 7 2 11 11 N 1.32351 * 119.64092 * 354.75539 * 10 9 7 12 12 C 1.32590 * 121.53115 * 180.02562 * 11 10 9 13 13 C 1.48339 * 119.67744 * 179.97438 * 12 11 10 14 14 C 1.39367 * 120.12168 * 179.72130 * 13 12 11 15 15 C 1.38019 * 119.87301 * 179.76493 * 14 13 12 16 16 C 1.38320 * 120.12373 * 0.51330 * 15 14 13 17 17 C 1.38331 * 120.24838 * 359.73960 * 16 15 14 18 18 C 1.38004 * 120.12258 * 0.02562 * 17 16 15 19 19 C 1.39375 * 120.64064 * 359.97009 * 12 11 10 20 20 C 1.38529 * 119.22785 * 0.03152 * 19 12 11 21 21 C 1.38557 * 118.58185 * 359.72005 * 20 19 12 22 22 N 1.48013 * 120.35074 * 180.26849 * 21 20 19 23 23 O 1.31699 * 120.00151 * 6.15611 * 22 21 20 24 24 O 1.31696 * 120.00036 * 186.16256 * 22 21 20 25 25 H 0.96999 * 119.99289 * 359.97438 * 1 2 3 26 26 H 0.97002 * 119.99726 * 359.97438 * 9 7 2 27 27 H 1.07998 * 120.06555 * 0.02562 * 14 13 12 28 28 H 1.08000 * 119.93496 * 180.24845 * 15 14 13 29 29 H 1.07996 * 119.87421 * 179.71933 * 16 15 14 30 30 H 1.08003 * 119.93202 * 180.02562 * 17 16 15 31 31 H 1.08007 * 120.05810 * 180.02562 * 18 17 16 32 32 H 1.08004 * 120.38733 * 180.02562 * 19 12 11 33 33 H 1.08000 * 120.71076 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2933 0.0000 0.0000 3 14 2.2273 1.6177 0.0000 4 1 3.0811 1.6963 -1.2125 5 1 1.2623 2.7464 -0.0006 6 1 3.0810 1.6964 1.2125 7 6 2.0272 -1.2714 0.0006 8 1 3.1072 -1.2714 0.0010 9 7 1.3633 -2.4213 0.0006 10 6 2.0583 -3.6252 0.0069 11 7 3.3781 -3.6196 -0.0923 12 6 4.0783 -4.7455 -0.0906 13 6 5.5563 -4.6914 -0.2046 14 6 6.3019 -5.8688 -0.1980 15 6 7.6765 -5.8127 -0.3091 16 6 8.3149 -4.5904 -0.4163 17 6 7.5803 -3.4183 -0.4181 18 6 6.2050 -3.4627 -0.3123 19 6 3.4391 -5.9794 0.0172 20 6 2.0584 -6.0190 0.1225 21 6 1.3590 -4.8229 0.1227 22 7 -0.1165 -4.8193 0.2393 23 8 -0.7620 -5.9449 0.4650 24 8 -0.7840 -3.6906 0.1172 25 1 -0.4849 0.8401 0.0004 26 1 0.3933 -2.4212 0.0006 27 1 5.8047 -6.8236 -0.1102 28 1 8.2549 -6.7248 -0.3082 29 1 9.3910 -4.5510 -0.4985 30 1 8.0841 -2.4667 -0.5024 31 1 5.6325 -2.5469 -0.3143 32 1 4.0136 -6.8940 0.0185 33 1 1.5386 -6.9618 0.2077 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181664.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:16 Heat of formation + Delta-G solvation = 83.214760 kcal Electronic energy + Delta-G solvation = -21243.887293 eV Core-core repulsion = 17852.733887 eV Total energy + Delta-G solvation = -3391.153406 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -39.87337 -38.62187 -36.60877 -36.37274 -33.82340 -32.32507 -31.92282 -31.16269 -30.42768 -28.75423 -25.78011 -24.99539 -22.82494 -22.39143 -21.29583 -20.96704 -19.08903 -17.74349 -16.80222 -16.59256 -16.34397 -15.79999 -15.15603 -15.00957 -14.47390 -14.40196 -13.78232 -13.73156 -13.33417 -13.18949 -12.98800 -12.71529 -12.56193 -12.07937 -12.01722 -11.79535 -11.18186 -11.17378 -11.02199 -10.83292 -10.06972 -9.38984 -9.26850 -9.22606 -9.01216 -8.76285 -8.73288 -8.56378 -8.21724 -7.63077 -4.40523 0.49285 1.43086 1.63434 2.09489 2.38088 2.51430 2.59377 2.69173 3.04934 3.26292 3.58040 4.03422 4.07157 4.75919 4.87537 5.07285 5.13159 5.31498 5.44702 5.59173 5.64114 5.73163 5.89937 5.95716 6.07085 6.20896 6.25559 6.45396 6.56534 6.65049 6.70968 6.84616 6.91916 6.99836 7.18623 7.30416 7.91952 8.05660 8.15673 8.75661 8.92662 8.99850 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.011754 B = 0.006596 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.535581 B = 4243.658436 C = 6610.776229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.017 3.983 3 Si 0.967 3.033 4 H -0.246 1.246 5 H -0.262 1.262 6 H -0.246 1.246 7 C -0.157 4.157 8 H 0.156 0.844 9 N -0.366 5.366 10 C 0.196 3.804 11 N -0.456 5.456 12 C 0.179 3.821 13 C -0.018 4.018 14 C -0.107 4.107 15 C -0.125 4.125 16 C -0.127 4.127 17 C -0.126 4.126 18 C -0.091 4.091 19 C -0.242 4.242 20 C 0.016 3.984 21 C -0.116 4.116 22 N 0.042 4.958 23 O -0.405 6.405 24 O -0.408 6.408 25 H 0.322 0.678 26 H 0.436 0.564 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.252 3.037 -1.119 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.214 4.214 3 Si 0.785 3.215 4 H -0.170 1.170 5 H -0.186 1.186 6 H -0.170 1.170 7 C -0.309 4.309 8 H 0.173 0.827 9 N 0.023 4.977 10 C -0.048 4.048 11 N -0.168 5.168 12 C 0.019 3.981 13 C -0.019 4.019 14 C -0.126 4.126 15 C -0.143 4.143 16 C -0.146 4.146 17 C -0.144 4.144 18 C -0.110 4.110 19 C -0.268 4.268 20 C -0.011 4.011 21 C -0.237 4.237 22 N 0.412 4.588 23 O -0.525 6.525 24 O -0.519 6.519 25 H 0.137 0.863 26 H 0.295 0.705 27 H 0.145 0.855 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.785 4.052 -1.162 15.374 hybrid contribution -1.095 -0.235 0.089 1.124 sum 13.689 3.817 -1.072 14.252 Atomic orbital electron populations 1.68746 1.08948 1.34875 1.20600 1.28241 0.95921 1.03125 0.94090 0.85288 0.79630 0.74714 0.81842 1.16955 1.18583 1.16982 1.22872 0.96825 0.82799 1.28416 0.82685 1.42711 1.14538 1.03357 1.37120 1.16594 0.87701 0.83232 1.17226 1.66616 1.04893 1.30643 1.14686 1.18982 0.91314 0.88209 0.99607 1.18545 0.90399 0.93434 0.99545 1.21233 0.93710 0.97851 0.99847 1.20988 0.94332 0.97667 1.01363 1.21123 0.99464 0.92784 1.01268 1.21088 0.94080 0.98113 1.01153 1.21356 0.93986 0.98147 0.97521 1.21157 0.93067 0.97825 1.14774 1.20658 0.93337 0.96215 0.90881 1.19610 0.78095 0.94873 1.31089 1.48976 1.02219 1.01259 1.06332 1.96008 1.71238 1.17128 1.68173 1.95602 1.67721 1.16885 1.71653 0.86343 0.70489 0.85531 0.86282 0.86631 0.86302 0.84884 0.85476 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -14.14 13.08 56.00 0.73 -13.40 16 2 C 0.02 0.31 5.70 -15.14 -0.09 0.23 16 3 Si 0.97 12.86 29.65 -169.99 -5.04 7.83 16 4 H -0.25 -3.20 7.11 56.52 0.40 -2.80 16 5 H -0.26 -3.36 7.11 56.52 0.40 -2.96 16 6 H -0.25 -3.23 7.11 56.52 0.40 -2.82 16 7 C -0.16 -3.23 9.94 -13.68 -0.14 -3.37 16 8 H 0.16 2.90 7.11 -52.49 -0.37 2.53 16 9 N -0.37 -8.82 5.20 -9.93 -0.05 -8.87 16 10 C 0.20 4.75 7.40 -155.04 -1.15 3.60 16 11 N -0.46 -9.77 8.11 -8.94 -0.07 -9.84 16 12 C 0.18 3.44 6.73 -82.96 -0.56 2.88 16 13 C -0.02 -0.29 5.88 -104.90 -0.62 -0.91 16 14 C -0.11 -1.42 9.42 -39.24 -0.37 -1.79 16 15 C -0.13 -1.42 10.03 -39.63 -0.40 -1.82 16 16 C -0.13 -1.41 10.04 -39.52 -0.40 -1.81 16 17 C -0.13 -1.53 10.03 -39.63 -0.40 -1.93 16 18 C -0.09 -1.34 9.57 -39.25 -0.38 -1.71 16 19 C -0.24 -4.49 9.46 -39.05 -0.37 -4.86 16 20 C 0.02 0.34 9.68 -39.36 -0.38 -0.04 16 21 C -0.12 -2.98 6.93 -79.48 -0.55 -3.53 16 22 N 0.04 1.24 4.98 34.19 0.17 1.41 16 23 O -0.40 -12.42 19.24 -31.57 -0.61 -13.03 16 24 O -0.41 -12.52 16.34 -31.57 -0.52 -13.04 16 25 H 0.32 5.45 8.26 -40.82 -0.34 5.11 16 26 H 0.44 11.43 4.17 -41.95 -0.17 11.25 16 27 H 0.13 1.48 6.18 -52.49 -0.32 1.15 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 31 H 0.13 2.00 7.54 -52.48 -0.40 1.61 16 32 H 0.13 1.87 6.18 -52.48 -0.32 1.54 16 33 H 0.13 2.77 7.67 -52.49 -0.40 2.36 16 LS Contribution 300.00 15.07 4.52 4.52 Total: -1.00 -31.54 300.00 -9.04 -40.58 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -2.40 Total: 18.88 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -5.78 Total: -15.05 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.78 Total: -30.70 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -1.12 Total: -26.06 kcal Atomic # 14 Polarization: 12.86 SS G_CDS: -5.04 Total: 7.83 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.54 -9.04 -40.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181664.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.797 kcal (2) G-P(sol) polarization free energy of solvation -31.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds