Wall clock time and date at job start Tue Mar 31 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47164 * 269.99586 * 3 2 1 5 5 H 1.48500 * 109.47324 * 29.99956 * 3 2 1 6 6 H 1.48499 * 109.47052 * 150.00084 * 3 2 1 7 7 C 1.37880 * 119.99523 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00297 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99799 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47047 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46994 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47197 * 180.02562 * 11 10 9 13 13 C 1.39671 * 120.00019 * 180.02562 * 12 11 10 14 14 C 1.38915 * 120.07111 * 180.02562 * 13 12 11 15 15 C 1.38107 * 119.92241 * 180.02562 * 14 13 12 16 16 C 1.38282 * 120.07223 * 359.97438 * 15 14 13 17 17 P 1.81404 * 119.92249 * 180.02562 * 16 15 14 18 18 O 1.48007 * 109.47234 * 295.00004 * 17 16 15 19 19 O 1.60998 * 109.47220 * 175.00013 * 17 16 15 20 20 O 1.61001 * 109.47306 * 55.00258 * 17 16 15 21 21 C 1.38286 * 120.15591 * 0.27801 * 16 15 14 22 22 C 1.38108 * 120.06761 * 359.45071 * 21 16 15 23 23 H 0.97003 * 119.99794 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47413 * 59.99402 * 9 7 2 25 25 H 1.09006 * 109.46860 * 299.99226 * 9 7 2 26 26 H 1.09007 * 109.46863 * 59.99825 * 10 9 7 27 27 H 1.08994 * 109.47206 * 299.99608 * 10 9 7 28 28 H 1.08999 * 109.46824 * 60.00706 * 11 10 9 29 29 H 1.08994 * 109.47243 * 300.00098 * 11 10 9 30 30 H 0.97005 * 119.99474 * 359.97438 * 12 11 10 31 31 H 1.07998 * 120.04141 * 359.97438 * 14 13 12 32 32 H 1.07998 * 119.96191 * 179.97438 * 15 14 13 33 33 H 0.96700 * 114.00128 * 300.00166 * 19 17 16 34 34 H 0.96701 * 113.99955 * 180.02562 * 20 17 16 35 35 H 1.07994 * 119.96745 * 179.70552 * 21 16 15 36 36 H 1.08001 * 120.03371 * 180.27787 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0023 11 6 5.5514 -2.6368 0.0022 12 7 6.0397 -4.0180 0.0027 13 6 7.4129 -4.2733 0.0033 14 6 7.8776 -5.5824 0.0033 15 6 9.2360 -5.8313 0.0044 16 6 10.1333 -4.7791 0.0050 17 15 11.9167 -5.1107 0.0058 18 8 12.2934 -5.7809 1.2705 19 8 12.7208 -3.7221 -0.1258 20 8 12.2859 -6.0644 -1.2377 21 6 9.6741 -3.4747 0.0104 22 6 8.3170 -3.2187 0.0036 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6801 0.8911 25 1 3.8752 -0.6807 -0.8890 26 1 3.6583 -3.1511 -0.8875 27 1 3.6578 -3.1499 0.8924 28 1 5.9148 -2.1223 0.8918 29 1 5.9148 -2.1237 -0.8881 30 1 5.4093 -4.7553 0.0034 31 1 7.1774 -6.4047 0.0032 32 1 9.5980 -6.8488 0.0047 33 1 12.5228 -3.2279 -0.9331 34 1 13.2256 -6.2839 -1.2996 35 1 10.3776 -2.6552 0.0157 36 1 7.9591 -2.1998 0.0032 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168435481.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:19 Heat of formation + Delta-G solvation = -190.092246 kcal Electronic energy + Delta-G solvation = -18967.958668 eV Core-core repulsion = 15721.346959 eV Total energy + Delta-G solvation = -3246.611709 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.096 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.54873 -37.00368 -36.29326 -36.18890 -33.75895 -33.04288 -31.89185 -31.18264 -29.22747 -26.68135 -23.75778 -22.67607 -21.52080 -20.41820 -19.63007 -19.05943 -17.67207 -16.93940 -16.33967 -15.88098 -15.65716 -15.18906 -14.86176 -14.60727 -14.34892 -13.89277 -13.70930 -13.55405 -13.40717 -13.08741 -12.78449 -12.66237 -12.32306 -12.05769 -11.70282 -11.43200 -11.11875 -11.09567 -10.55855 -10.48803 -10.14731 -10.13335 -9.93448 -9.82611 -9.35072 -9.22736 -8.65918 -7.72714 -6.15928 -4.15502 1.03080 1.19866 1.44089 3.21192 3.29140 3.31174 3.32050 3.50651 3.90888 4.33985 4.50588 4.64051 4.91545 5.06440 5.17194 5.17849 5.28284 5.39827 5.48117 5.67859 5.75011 5.83487 5.93028 6.00175 6.07703 6.24910 6.26770 6.60405 6.63608 6.78327 7.06486 7.15366 7.20871 7.46223 7.56419 7.64841 8.39883 8.87454 9.45410 10.97345 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.039417 B = 0.002609 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.177160 B =10728.829911 C =11237.056777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.113 4.113 11 C 0.113 3.887 12 N -0.733 5.733 13 C 0.259 3.741 14 C -0.218 4.218 15 C 0.005 3.995 16 C -0.801 4.801 17 P 2.419 2.581 18 O -1.016 7.016 19 O -0.857 6.857 20 O -0.878 6.878 21 C -0.024 4.024 22 C -0.214 4.214 23 H 0.264 0.736 24 H 0.018 0.982 25 H 0.013 0.987 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.403 0.597 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.422 0.578 34 H 0.433 0.567 35 H 0.124 0.876 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.450 -9.334 -5.021 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.151 4.151 11 C -0.010 4.010 12 N -0.358 5.358 13 C 0.150 3.850 14 C -0.240 4.240 15 C -0.014 4.014 16 C -0.792 4.792 17 P 2.632 2.368 18 O -1.117 7.117 19 O -0.772 6.772 20 O -0.795 6.795 21 C -0.043 4.043 22 C -0.236 4.236 23 H 0.074 0.926 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.238 0.762 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.275 0.725 34 H 0.290 0.710 35 H 0.142 0.858 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 24.949 -8.949 -4.621 26.906 hybrid contribution -0.661 1.098 -0.645 1.435 sum 24.289 -7.851 -5.265 26.063 Atomic orbital electron populations 1.69911 1.06321 1.27061 1.50641 1.25041 0.94775 0.99262 0.94398 0.86752 0.80318 0.83520 0.78530 1.20237 1.21225 1.19050 1.21072 0.89208 0.94582 1.51445 0.91021 1.19494 0.97484 0.91217 0.96520 1.21685 0.90283 1.01202 1.01926 1.21753 0.97010 0.81322 1.00920 1.45234 1.02897 1.09026 1.78595 1.18126 0.84609 0.93526 0.88729 1.20738 0.96322 0.94897 1.12069 1.20454 0.92489 0.97595 0.90827 1.32209 1.25605 0.98515 1.22873 0.88211 0.48057 0.48755 0.51825 1.95161 1.86380 1.78032 1.52134 1.88096 1.80866 1.56382 1.51906 1.87748 1.38018 1.79997 1.73760 1.20610 0.95797 0.94628 0.93227 1.20780 0.92991 0.98510 1.11342 0.92582 0.96361 0.96836 0.92060 0.91981 0.92154 0.92237 0.76197 0.85635 0.85662 0.72455 0.70992 0.85767 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.23 27.47 -169.99 -4.67 16.57 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.53 -14.63 9.66 -34.44 -0.33 -14.96 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 10 C -0.11 -2.06 5.27 -26.73 -0.14 -2.20 16 11 C 0.11 1.71 4.91 -4.04 -0.02 1.69 16 12 N -0.73 -10.01 5.73 -58.63 -0.34 -10.34 16 13 C 0.26 3.56 6.65 -83.79 -0.56 3.00 16 14 C -0.22 -2.78 9.90 -39.38 -0.39 -3.17 16 15 C 0.01 0.06 9.79 -39.61 -0.39 -0.32 16 16 C -0.80 -8.80 6.25 -39.55 -0.25 -9.05 16 17 P 2.42 18.47 6.72 -42.89 -0.29 18.18 16 18 O -1.02 -14.08 18.58 -9.10 -0.17 -14.25 16 19 O -0.86 -4.10 13.43 -11.30 -0.15 -4.25 16 20 O -0.88 -4.06 14.06 -11.30 -0.16 -4.22 16 21 C -0.02 -0.26 9.69 -39.61 -0.38 -0.65 16 22 C -0.21 -2.79 9.31 -39.38 -0.37 -3.16 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 25 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.91 7.95 -51.93 -0.41 0.50 16 29 H 0.06 0.88 7.95 -51.93 -0.41 0.46 16 30 H 0.40 4.96 8.49 -40.82 -0.35 4.61 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.42 -0.29 9.11 45.56 0.42 0.12 16 34 H 0.43 -0.02 9.11 45.56 0.42 0.40 16 35 H 0.12 0.91 7.59 -52.49 -0.40 0.51 16 36 H 0.13 1.58 6.73 -52.49 -0.35 1.23 16 LS Contribution 322.04 15.07 4.85 4.85 Total: -1.00 -39.56 322.04 -6.32 -45.88 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -3.14 Total: 1.57 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -3.04 Total: -27.32 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.44 Total: -37.00 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.48 Total: -22.72 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 15 Polarization: 18.47 SS G_CDS: -0.29 Total: 18.18 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -39.56 -6.32 -45.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168435481.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.211 kcal (2) G-P(sol) polarization free energy of solvation -39.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds