Wall clock time and date at job start Tue Mar 31 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47164 * 269.99586 * 3 2 1 5 5 H 1.48500 * 109.47324 * 29.99956 * 3 2 1 6 6 H 1.48499 * 109.47052 * 150.00084 * 3 2 1 7 7 C 1.37880 * 119.99523 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00297 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99799 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47047 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46994 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47197 * 180.02562 * 11 10 9 13 13 C 1.39671 * 120.00019 * 180.02562 * 12 11 10 14 14 C 1.38915 * 120.07111 * 180.02562 * 13 12 11 15 15 C 1.38107 * 119.92241 * 180.02562 * 14 13 12 16 16 C 1.38282 * 120.07223 * 359.97438 * 15 14 13 17 17 P 1.81404 * 119.92249 * 180.02562 * 16 15 14 18 18 O 1.48007 * 109.47234 * 295.00004 * 17 16 15 19 19 O 1.60998 * 109.47220 * 175.00013 * 17 16 15 20 20 O 1.61001 * 109.47306 * 55.00258 * 17 16 15 21 21 C 1.38286 * 120.15591 * 0.27801 * 16 15 14 22 22 C 1.38108 * 120.06761 * 359.45071 * 21 16 15 23 23 H 0.97003 * 119.99794 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47413 * 59.99402 * 9 7 2 25 25 H 1.09006 * 109.46860 * 299.99226 * 9 7 2 26 26 H 1.09007 * 109.46863 * 59.99825 * 10 9 7 27 27 H 1.08994 * 109.47206 * 299.99608 * 10 9 7 28 28 H 1.08999 * 109.46824 * 60.00706 * 11 10 9 29 29 H 1.08994 * 109.47243 * 300.00098 * 11 10 9 30 30 H 0.97005 * 119.99474 * 359.97438 * 12 11 10 31 31 H 1.07998 * 120.04141 * 359.97438 * 14 13 12 32 32 H 1.07998 * 119.96191 * 179.97438 * 15 14 13 33 33 H 0.96700 * 114.00128 * 300.00166 * 19 17 16 34 34 H 0.96701 * 113.99955 * 180.02562 * 20 17 16 35 35 H 1.07994 * 119.96745 * 179.70552 * 21 16 15 36 36 H 1.08001 * 120.03371 * 180.27787 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0023 11 6 5.5514 -2.6368 0.0022 12 7 6.0397 -4.0180 0.0027 13 6 7.4129 -4.2733 0.0033 14 6 7.8776 -5.5824 0.0033 15 6 9.2360 -5.8313 0.0044 16 6 10.1333 -4.7791 0.0050 17 15 11.9167 -5.1107 0.0058 18 8 12.2934 -5.7809 1.2705 19 8 12.7208 -3.7221 -0.1258 20 8 12.2859 -6.0644 -1.2377 21 6 9.6741 -3.4747 0.0104 22 6 8.3170 -3.2187 0.0036 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6801 0.8911 25 1 3.8752 -0.6807 -0.8890 26 1 3.6583 -3.1511 -0.8875 27 1 3.6578 -3.1499 0.8924 28 1 5.9148 -2.1223 0.8918 29 1 5.9148 -2.1237 -0.8881 30 1 5.4093 -4.7553 0.0034 31 1 7.1774 -6.4047 0.0032 32 1 9.5980 -6.8488 0.0047 33 1 12.5228 -3.2279 -0.9331 34 1 13.2256 -6.2839 -1.2996 35 1 10.3776 -2.6552 0.0157 36 1 7.9591 -2.1998 0.0032 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168435481.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:18 Heat of formation + Delta-G solvation = -221.654091 kcal Electronic energy + Delta-G solvation = -18969.327292 eV Core-core repulsion = 15721.346959 eV Total energy + Delta-G solvation = -3247.980334 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.096 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.48030 -37.62925 -37.27712 -36.60259 -35.47126 -33.91116 -33.63134 -32.09634 -30.50403 -28.16178 -25.09921 -23.80282 -22.59253 -22.00956 -20.12384 -19.47585 -19.02487 -18.56832 -17.22918 -16.87551 -16.51788 -16.27665 -16.11774 -15.50565 -15.34694 -14.94015 -14.81566 -14.68474 -14.52573 -14.14340 -13.81606 -13.66620 -13.48553 -13.17539 -12.86313 -12.80620 -12.51264 -12.15990 -11.95665 -11.77168 -11.76132 -11.41780 -11.38685 -11.30017 -10.99340 -10.82176 -10.13099 -8.71957 -8.34959 -6.40520 0.15104 0.28133 0.92418 1.32914 1.35348 1.46778 2.26265 2.31724 2.58767 3.00515 3.60501 3.72457 3.81802 3.94001 4.07523 4.19321 4.36936 4.37884 4.49547 4.56346 4.77516 4.78229 4.81370 4.92355 5.04057 5.12379 5.16742 5.34575 5.45915 5.57409 5.69876 5.78050 6.13040 6.21541 6.34982 6.56740 6.67788 7.05392 7.24533 8.81863 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.039417 B = 0.002609 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.177160 B =10728.829911 C =11237.056777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.538 4.538 8 H 0.030 0.970 9 C -0.008 4.008 10 C -0.103 4.103 11 C 0.129 3.871 12 N -0.737 5.737 13 C 0.237 3.763 14 C -0.231 4.231 15 C -0.015 4.015 16 C -0.806 4.806 17 P 2.483 2.517 18 O -1.085 7.085 19 O -0.860 6.860 20 O -0.879 6.879 21 C -0.028 4.028 22 C -0.233 4.233 23 H 0.267 0.733 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.406 0.594 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.445 0.555 34 H 0.453 0.547 35 H 0.163 0.837 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.635 -8.263 -5.718 31.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.576 4.576 8 H 0.048 0.952 9 C -0.046 4.046 10 C -0.141 4.141 11 C 0.005 3.995 12 N -0.363 5.363 13 C 0.130 3.870 14 C -0.253 4.253 15 C -0.034 4.034 16 C -0.798 4.798 17 P 2.694 2.306 18 O -1.181 7.181 19 O -0.782 6.782 20 O -0.802 6.802 21 C -0.046 4.046 22 C -0.256 4.256 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.242 0.758 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.304 0.696 34 H 0.314 0.686 35 H 0.180 0.820 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 28.184 -7.925 -5.295 29.753 hybrid contribution -1.640 0.676 -0.493 1.841 sum 26.545 -7.249 -5.788 28.119 Atomic orbital electron populations 1.70077 1.08450 1.28315 1.52392 1.26091 0.95676 1.03821 0.93966 0.85593 0.79522 0.77823 0.79315 1.18954 1.21122 1.16648 1.21472 0.92145 0.93115 1.50824 0.95178 1.19436 0.93895 0.94184 0.97067 1.21461 0.92796 0.98368 1.01450 1.21432 0.94225 0.82403 1.01419 1.45047 1.03246 1.08390 1.79601 1.18327 0.84482 0.94256 0.89907 1.20972 0.97088 0.95075 1.12178 1.20824 0.92606 0.98919 0.91030 1.32810 1.27452 0.98406 1.21169 0.86019 0.45869 0.48271 0.50413 1.95114 1.87269 1.80006 1.55673 1.88066 1.80203 1.56160 1.53758 1.87706 1.40087 1.79744 1.72698 1.21107 0.95829 0.95863 0.91836 1.21065 0.93977 0.98627 1.11936 0.92417 0.95759 0.95676 0.92478 0.92706 0.91929 0.91479 0.75806 0.84654 0.84295 0.69617 0.68597 0.82002 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 2 C 0.00 0.07 5.47 84.65 0.46 0.54 16 3 Si 0.95 43.16 27.47 68.60 1.88 45.04 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 7 C -0.54 -30.53 9.66 25.60 0.25 -30.29 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 9 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 10 C -0.10 -3.70 5.27 30.60 0.16 -3.54 16 11 C 0.13 3.71 4.91 86.38 0.42 4.14 16 12 N -0.74 -19.48 5.73 -339.42 -1.95 -21.43 16 13 C 0.24 6.27 6.65 38.21 0.25 6.53 16 14 C -0.23 -5.71 9.90 22.40 0.22 -5.49 16 15 C -0.02 -0.35 9.79 22.25 0.22 -0.13 16 16 C -0.81 -15.99 6.25 22.29 0.14 -15.85 16 17 P 2.48 31.93 6.72 -40.88 -0.27 31.65 16 18 O -1.08 -28.72 18.58 -11.84 -0.22 -28.94 16 19 O -0.86 -5.31 13.43 -18.20 -0.24 -5.55 16 20 O -0.88 -5.75 14.06 -18.20 -0.26 -6.00 16 21 C -0.03 -0.54 9.69 22.25 0.22 -0.33 16 22 C -0.23 -5.66 9.31 22.40 0.21 -5.45 16 23 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 24 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 25 H 0.02 1.06 7.57 -2.38 -0.02 1.04 16 26 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.06 1.78 7.95 -2.39 -0.02 1.76 16 29 H 0.07 1.83 7.95 -2.39 -0.02 1.81 16 30 H 0.41 9.88 8.49 -92.70 -0.79 9.09 16 31 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 32 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.45 -2.46 9.11 -74.06 -0.67 -3.13 16 34 H 0.45 -1.32 9.11 -74.06 -0.67 -2.00 16 35 H 0.16 1.73 7.59 -2.91 -0.02 1.70 16 36 H 0.13 2.99 6.73 -2.91 -0.02 2.97 16 Total: -1.00 -87.04 322.04 0.85 -86.19 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -1.07 Total: 8.33 kcal Atomic # 6 Polarization: -52.78 SS G_CDS: 2.67 Total: -50.10 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -1.65 Total: -80.61 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -0.72 Total: -40.49 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.04 kcal Atomic # 15 Polarization: 31.93 SS G_CDS: -0.27 Total: 31.65 kcal Total: -87.04 0.85 -86.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168435481.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.468 kcal (2) G-P(sol) polarization free energy of solvation -87.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds