Wall clock time and date at job start Tue Mar 31 2020 05:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36745 * 119.99673 * 2 1 4 4 H 1.07996 * 119.99975 * 156.58312 * 3 2 1 5 5 C 1.39097 * 120.00266 * 336.57484 * 3 2 1 6 6 N 1.31337 * 119.99968 * 344.98300 * 5 3 2 7 7 Si 1.86799 * 119.99921 * 164.97354 * 5 3 2 8 8 H 1.48500 * 109.47073 * 60.00704 * 7 5 3 9 9 H 1.48504 * 109.47027 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47424 * 300.00609 * 7 5 3 11 11 C 1.34774 * 119.99640 * 180.27864 * 2 1 3 12 12 O 1.21782 * 119.99222 * 179.72428 * 11 2 1 13 13 C 1.41791 * 120.00609 * 359.71589 * 11 2 1 14 14 C 1.35139 * 120.00408 * 179.97438 * 13 11 2 15 15 C 1.46927 * 120.00330 * 180.02562 * 14 13 11 16 16 C 1.40002 * 120.15516 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.84987 * 179.97438 * 16 15 14 18 18 F 1.35093 * 119.91916 * 179.97438 * 17 16 15 19 19 C 1.38986 * 120.16598 * 359.97438 * 17 16 15 20 20 F 1.35104 * 119.83618 * 179.97438 * 19 17 16 21 21 C 1.38509 * 120.32274 * 0.02714 * 19 17 16 22 22 C 1.38126 * 120.14687 * 359.69693 * 21 19 17 23 23 F 1.35100 * 120.08874 * 180.27797 * 22 21 19 24 24 H 1.09002 * 109.47648 * 94.70263 * 1 2 3 25 25 H 1.09005 * 109.47367 * 214.70252 * 1 2 3 26 26 H 1.09002 * 109.47712 * 334.69501 * 1 2 3 27 27 H 0.97005 * 120.00181 * 179.97438 * 6 5 3 28 28 H 1.08002 * 119.99784 * 0.02562 * 13 11 2 29 29 H 1.08001 * 119.99941 * 0.02562 * 14 13 11 30 30 H 1.08000 * 120.07874 * 359.95190 * 16 15 14 31 31 H 1.08002 * 119.92484 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1486 1.1843 0.0000 4 1 3.1619 1.2229 0.3717 5 6 1.5391 2.3393 -0.4789 6 7 0.4407 2.2540 -1.1938 7 14 2.2828 4.0115 -0.1050 8 1 3.6591 4.0763 -0.6589 9 1 1.4493 5.0735 -0.7238 10 1 2.3309 4.2144 1.3653 11 6 2.1388 -1.1672 -0.0057 12 8 3.3566 -1.1671 -0.0108 13 6 1.4299 -2.3952 -0.0056 14 6 2.1056 -3.5655 -0.0118 15 6 1.3710 -4.8380 -0.0122 16 6 -0.0290 -4.8418 -0.0068 17 6 -0.7120 -6.0396 -0.0078 18 9 -2.0629 -6.0449 -0.0020 19 6 -0.0141 -7.2415 -0.0147 20 9 -0.6901 -8.4112 -0.0151 21 6 1.3710 -7.2458 -0.0201 22 6 2.0684 -6.0536 -0.0249 23 9 3.4194 -6.0593 -0.0359 24 1 -0.3634 -0.0843 -1.0242 25 1 -0.3634 -0.8449 0.5851 26 1 -0.3634 0.9290 0.4393 27 1 0.0154 3.0595 -1.5274 28 1 0.3499 -2.3952 -0.0013 29 1 3.1856 -3.5655 -0.0164 30 1 -0.5729 -3.9088 -0.0014 31 1 1.9068 -8.1836 -0.0250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179882135.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:47 Heat of formation + Delta-G solvation = -112.483936 kcal Electronic energy + Delta-G solvation = -21229.215176 eV Core-core repulsion = 17255.426147 eV Total energy + Delta-G solvation = -3973.789029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.67034 -49.08089 -48.74025 -39.18499 -38.47500 -35.03798 -33.60694 -31.89167 -30.64141 -29.37216 -26.59461 -25.28341 -24.14961 -23.04027 -21.21286 -18.70231 -18.52761 -17.84129 -17.22079 -17.01980 -16.61490 -16.48867 -15.63052 -15.58714 -15.14505 -14.93286 -14.82589 -14.52994 -14.25487 -14.09398 -14.01023 -13.33219 -12.81621 -12.37098 -12.27028 -11.95447 -11.71793 -11.61174 -11.43895 -11.25778 -10.91916 -10.54019 -10.48277 -10.07950 -9.22883 -9.13103 -8.53486 -8.11422 -7.86095 -6.61201 -4.00492 0.19138 0.62930 1.92591 3.07073 3.12940 3.16676 3.19732 3.42606 3.79830 3.95596 4.15203 4.21734 4.30473 4.42057 4.72379 4.93501 5.01405 5.29904 5.31184 5.50075 5.57591 5.66889 5.74056 6.03385 6.21289 6.47698 6.62948 6.66374 6.79395 6.98837 7.31108 7.94208 8.27865 8.98866 9.17893 9.84586 10.41617 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.029903 B = 0.003612 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.144481 B = 7750.460205 C = 8613.494635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.420 5.420 3 C -0.293 4.293 4 H 0.106 0.894 5 C 0.030 3.970 6 N -0.861 5.861 7 Si 0.932 3.068 8 H -0.269 1.269 9 H -0.281 1.281 10 H -0.270 1.270 11 C 0.445 3.555 12 O -0.599 6.599 13 C -0.129 4.129 14 C -0.107 4.107 15 C -0.044 4.044 16 C -0.105 4.105 17 C 0.068 3.932 18 F -0.125 7.125 19 C 0.080 3.920 20 F -0.125 7.125 21 C -0.158 4.158 22 C 0.122 3.878 23 F -0.120 7.120 24 H 0.057 0.943 25 H 0.033 0.967 26 H 0.077 0.923 27 H 0.275 0.725 28 H 0.119 0.881 29 H 0.142 0.858 30 H 0.160 0.840 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 -14.003 2.136 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.135 5.135 3 C -0.422 4.422 4 H 0.123 0.877 5 C -0.176 4.176 6 N -0.497 5.497 7 Si 0.758 3.242 8 H -0.194 1.194 9 H -0.206 1.206 10 H -0.195 1.195 11 C 0.239 3.761 12 O -0.488 6.488 13 C -0.150 4.150 14 C -0.129 4.129 15 C -0.045 4.045 16 C -0.124 4.124 17 C 0.048 3.952 18 F -0.104 7.104 19 C 0.059 3.941 20 F -0.103 7.103 21 C -0.178 4.178 22 C 0.102 3.898 23 F -0.098 7.098 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.136 0.864 29 H 0.160 0.840 30 H 0.178 0.822 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.074 -13.800 2.031 14.532 hybrid contribution -0.153 0.596 -0.012 0.616 sum -4.227 -13.204 2.020 14.010 Atomic orbital electron populations 1.21649 0.81059 1.00506 1.01044 1.43762 1.05777 1.05417 1.58567 1.19833 1.00406 0.83891 1.38050 0.87670 1.25513 0.96525 1.00736 0.94814 1.69962 1.19106 1.30550 1.30121 0.85891 0.79252 0.79998 0.79099 1.19372 1.20649 1.19527 1.16755 0.88008 0.83937 0.87399 1.90671 1.13324 1.87155 1.57622 1.22466 1.00007 0.94004 0.98529 1.21832 1.00393 0.88732 1.01920 1.19018 0.92262 0.93160 1.00060 1.21209 0.93224 0.97466 1.00476 1.17463 0.77721 0.92982 1.07056 1.91546 1.27584 1.97213 1.94027 1.17268 0.89526 0.80488 1.06800 1.91540 1.79794 1.45025 1.93953 1.20790 0.92009 0.99267 1.05686 1.17353 0.77522 0.92543 1.02347 1.91555 1.27688 1.97144 1.93390 0.92448 0.94886 0.90379 0.91507 0.86384 0.84029 0.82248 0.82462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.10 8.28 59.85 0.50 2.60 16 2 N -0.42 -10.42 3.00 -125.41 -0.38 -10.80 16 3 C -0.29 -7.85 9.24 -15.04 -0.14 -7.99 16 4 H 0.11 2.94 7.44 -52.49 -0.39 2.55 16 5 C 0.03 0.75 4.99 -17.44 -0.09 0.67 16 6 N -0.86 -21.59 10.91 55.50 0.61 -20.99 16 7 Si 0.93 19.53 29.58 -169.99 -5.03 14.50 16 8 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 9 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 10 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 11 C 0.45 10.77 7.40 -14.90 -0.11 10.66 16 12 O -0.60 -16.65 15.81 5.12 0.08 -16.57 16 13 C -0.13 -2.38 8.45 -39.33 -0.33 -2.71 16 14 C -0.11 -1.79 9.21 -37.17 -0.34 -2.13 16 15 C -0.04 -0.59 5.87 -105.00 -0.62 -1.21 16 16 C -0.10 -1.26 9.38 -39.05 -0.37 -1.63 16 17 C 0.07 0.81 7.29 -39.44 -0.29 0.52 16 18 F -0.13 -1.56 17.17 2.25 0.04 -1.52 16 19 C 0.08 0.90 7.31 -39.20 -0.29 0.62 16 20 F -0.12 -1.45 17.17 2.25 0.04 -1.41 16 21 C -0.16 -1.64 9.98 -39.52 -0.39 -2.04 16 22 C 0.12 1.52 7.29 -38.90 -0.28 1.24 16 23 F -0.12 -1.59 16.61 2.25 0.04 -1.56 16 24 H 0.06 1.21 7.86 -51.93 -0.41 0.81 16 25 H 0.03 0.55 6.36 -51.93 -0.33 0.22 16 26 H 0.08 1.70 6.76 -51.93 -0.35 1.35 16 27 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 28 H 0.12 1.81 4.21 -52.49 -0.22 1.59 16 29 H 0.14 2.61 7.13 -52.49 -0.37 2.23 16 30 H 0.16 1.73 6.17 -52.49 -0.32 1.40 16 31 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 288.57 15.07 4.35 4.35 Total: -1.00 -29.13 288.57 -4.96 -34.09 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -1.96 Total: 1.32 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.75 Total: -1.42 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.23 Total: -31.78 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.08 Total: -16.57 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.11 Total: -4.48 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.13 -4.96 -34.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179882135.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.393 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds