Wall clock time and date at job start Tue Mar 31 2020 05:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36745 * 119.99673 * 2 1 4 4 H 1.07996 * 119.99975 * 156.58312 * 3 2 1 5 5 C 1.39097 * 120.00266 * 336.57484 * 3 2 1 6 6 N 1.31337 * 119.99968 * 344.98300 * 5 3 2 7 7 Si 1.86799 * 119.99921 * 164.97354 * 5 3 2 8 8 H 1.48500 * 109.47073 * 60.00704 * 7 5 3 9 9 H 1.48504 * 109.47027 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47424 * 300.00609 * 7 5 3 11 11 C 1.34774 * 119.99640 * 180.27864 * 2 1 3 12 12 O 1.21782 * 119.99222 * 179.72428 * 11 2 1 13 13 C 1.41791 * 120.00609 * 359.71589 * 11 2 1 14 14 C 1.35139 * 120.00408 * 179.97438 * 13 11 2 15 15 C 1.46927 * 120.00330 * 180.02562 * 14 13 11 16 16 C 1.40002 * 120.15516 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.84987 * 179.97438 * 16 15 14 18 18 F 1.35093 * 119.91916 * 179.97438 * 17 16 15 19 19 C 1.38986 * 120.16598 * 359.97438 * 17 16 15 20 20 F 1.35104 * 119.83618 * 179.97438 * 19 17 16 21 21 C 1.38509 * 120.32274 * 0.02714 * 19 17 16 22 22 C 1.38126 * 120.14687 * 359.69693 * 21 19 17 23 23 F 1.35100 * 120.08874 * 180.27797 * 22 21 19 24 24 H 1.09002 * 109.47648 * 94.70263 * 1 2 3 25 25 H 1.09005 * 109.47367 * 214.70252 * 1 2 3 26 26 H 1.09002 * 109.47712 * 334.69501 * 1 2 3 27 27 H 0.97005 * 120.00181 * 179.97438 * 6 5 3 28 28 H 1.08002 * 119.99784 * 0.02562 * 13 11 2 29 29 H 1.08001 * 119.99941 * 0.02562 * 14 13 11 30 30 H 1.08000 * 120.07874 * 359.95190 * 16 15 14 31 31 H 1.08002 * 119.92484 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1486 1.1843 0.0000 4 1 3.1619 1.2229 0.3717 5 6 1.5391 2.3393 -0.4789 6 7 0.4407 2.2540 -1.1938 7 14 2.2828 4.0115 -0.1050 8 1 3.6591 4.0763 -0.6589 9 1 1.4493 5.0735 -0.7238 10 1 2.3309 4.2144 1.3653 11 6 2.1388 -1.1672 -0.0057 12 8 3.3566 -1.1671 -0.0108 13 6 1.4299 -2.3952 -0.0056 14 6 2.1056 -3.5655 -0.0118 15 6 1.3710 -4.8380 -0.0122 16 6 -0.0290 -4.8418 -0.0068 17 6 -0.7120 -6.0396 -0.0078 18 9 -2.0629 -6.0449 -0.0020 19 6 -0.0141 -7.2415 -0.0147 20 9 -0.6901 -8.4112 -0.0151 21 6 1.3710 -7.2458 -0.0201 22 6 2.0684 -6.0536 -0.0249 23 9 3.4194 -6.0593 -0.0359 24 1 -0.3634 -0.0843 -1.0242 25 1 -0.3634 -0.8449 0.5851 26 1 -0.3634 0.9290 0.4393 27 1 0.0154 3.0595 -1.5274 28 1 0.3499 -2.3952 -0.0013 29 1 3.1856 -3.5655 -0.0164 30 1 -0.5729 -3.9088 -0.0014 31 1 1.9068 -8.1836 -0.0250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179882135.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:47 Heat of formation + Delta-G solvation = -128.800608 kcal Electronic energy + Delta-G solvation = -21229.922720 eV Core-core repulsion = 17255.426147 eV Total energy + Delta-G solvation = -3974.496573 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.62914 -50.14020 -49.69933 -40.72302 -39.79672 -36.85273 -35.00775 -33.73501 -31.65148 -30.63869 -28.31202 -26.89535 -25.41728 -24.18294 -22.56221 -20.09637 -19.57304 -19.13809 -18.80750 -18.36644 -17.90860 -17.57999 -16.89812 -16.62391 -16.52968 -16.11216 -16.09272 -15.86831 -15.74269 -15.44777 -15.18112 -14.68069 -14.35675 -13.84770 -13.45633 -13.37933 -13.23111 -13.15753 -12.85261 -12.61814 -12.58303 -12.27977 -12.13651 -11.28197 -11.04985 -10.48589 -10.13344 -9.76438 -9.31170 -8.44957 -6.00248 -0.91467 -0.31481 0.63392 1.41382 1.43255 1.51969 2.06008 2.24982 2.45155 2.55529 2.81103 3.00544 3.14520 3.16740 3.26180 3.46326 3.79918 4.04348 4.28039 4.36187 4.43019 4.61908 4.63670 4.69134 4.79387 4.97471 5.24418 5.30416 5.35768 5.39271 5.49227 6.05335 6.43125 7.10147 7.36652 7.98536 8.57279 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.029903 B = 0.003612 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.144481 B = 7750.460205 C = 8613.494635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.441 5.441 3 C -0.346 4.346 4 H 0.074 0.926 5 C 0.003 3.997 6 N -0.882 5.882 7 Si 0.992 3.008 8 H -0.276 1.276 9 H -0.267 1.267 10 H -0.265 1.265 11 C 0.443 3.557 12 O -0.648 6.648 13 C -0.159 4.159 14 C -0.062 4.062 15 C -0.068 4.068 16 C -0.085 4.085 17 C 0.062 3.938 18 F -0.127 7.127 19 C 0.098 3.902 20 F -0.122 7.122 21 C -0.143 4.143 22 C 0.129 3.871 23 F -0.126 7.126 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.279 0.721 28 H 0.154 0.846 29 H 0.121 0.879 30 H 0.175 0.825 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 -16.374 2.327 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.156 5.156 3 C -0.474 4.474 4 H 0.092 0.908 5 C -0.201 4.201 6 N -0.518 5.518 7 Si 0.814 3.186 8 H -0.202 1.202 9 H -0.191 1.191 10 H -0.190 1.190 11 C 0.237 3.763 12 O -0.540 6.540 13 C -0.179 4.179 14 C -0.084 4.084 15 C -0.069 4.069 16 C -0.104 4.104 17 C 0.042 3.958 18 F -0.105 7.105 19 C 0.077 3.923 20 F -0.100 7.100 21 C -0.163 4.163 22 C 0.109 3.891 23 F -0.104 7.104 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.172 0.828 29 H 0.139 0.861 30 H 0.192 0.808 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.533 -16.204 2.223 17.266 hybrid contribution 0.296 0.835 -0.067 0.888 sum -5.238 -15.369 2.156 16.379 Atomic orbital electron populations 1.21632 0.78971 1.01507 1.01174 1.43894 1.07139 1.04981 1.59618 1.19683 1.00223 0.85944 1.41557 0.90766 1.26169 0.96850 1.03143 0.93962 1.70012 1.19848 1.31414 1.30557 0.85027 0.78134 0.76327 0.79092 1.20159 1.19097 1.18960 1.17618 0.87716 0.85572 0.85373 1.90616 1.15797 1.88273 1.59331 1.22236 1.01458 0.91677 1.02550 1.21883 0.99690 0.89961 0.96868 1.18796 0.92867 0.91933 1.03304 1.21279 0.92417 0.98314 0.98374 1.17480 0.77708 0.93096 1.07503 1.91554 1.27700 1.97208 1.94070 1.17383 0.89792 0.80318 1.04796 1.91565 1.79816 1.44923 1.93691 1.20969 0.91564 0.99695 1.04028 1.17478 0.77266 0.92842 1.01479 1.91555 1.28291 1.97182 1.93358 0.93177 0.90650 0.91938 0.91097 0.82832 0.86077 0.80810 0.79369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.59 8.28 127.77 1.06 5.64 16 2 N -0.44 -22.64 3.00 -668.88 -2.01 -24.64 16 3 C -0.35 -19.50 9.24 84.13 0.78 -18.73 16 4 H 0.07 4.49 7.44 -2.91 -0.02 4.47 16 5 C 0.00 0.14 4.99 84.97 0.42 0.57 16 6 N -0.88 -45.10 10.91 21.69 0.24 -44.87 16 7 Si 0.99 41.08 29.58 68.60 2.03 43.11 16 8 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 9 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 10 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 11 C 0.44 22.07 7.40 85.12 0.63 22.70 16 12 O -0.65 -37.85 15.81 -4.61 -0.07 -37.92 16 13 C -0.16 -5.76 8.45 22.43 0.19 -5.57 16 14 C -0.06 -2.02 9.21 23.83 0.22 -1.80 16 15 C -0.07 -1.64 5.87 -20.11 -0.12 -1.76 16 16 C -0.09 -1.75 9.38 22.61 0.21 -1.54 16 17 C 0.06 1.24 7.29 22.36 0.16 1.41 16 18 F -0.13 -2.71 17.17 44.97 0.77 -1.94 16 19 C 0.10 1.79 7.31 22.51 0.16 1.95 16 20 F -0.12 -2.31 17.17 44.97 0.77 -1.54 16 21 C -0.14 -2.35 9.98 22.31 0.22 -2.13 16 22 C 0.13 2.79 7.29 22.71 0.17 2.96 16 23 F -0.13 -3.05 16.61 44.97 0.75 -2.31 16 24 H 0.05 2.12 7.86 -2.39 -0.02 2.10 16 25 H 0.08 2.41 6.36 -2.38 -0.02 2.39 16 26 H 0.06 2.77 6.76 -2.39 -0.02 2.75 16 27 H 0.28 13.27 8.31 -92.70 -0.77 12.50 16 28 H 0.15 4.33 4.21 -2.91 -0.01 4.32 16 29 H 0.12 4.48 7.13 -2.91 -0.02 4.46 16 30 H 0.17 3.07 6.17 -2.91 -0.02 3.05 16 31 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -66.65 288.57 7.79 -58.86 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.20 Total: 7.54 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 4.11 Total: 3.70 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -1.77 Total: -69.51 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.07 Total: -37.92 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 2.29 Total: -5.78 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -66.65 7.79 -58.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179882135.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.942 kcal (2) G-P(sol) polarization free energy of solvation -66.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds