Wall clock time and date at job start Tue Mar 31 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 119.99834 * 2 1 4 4 H 1.48508 * 109.46844 * 82.47463 * 3 2 1 5 5 H 1.48496 * 109.46979 * 202.46822 * 3 2 1 6 6 H 1.48496 * 109.47242 * 322.47421 * 3 2 1 7 7 C 1.39932 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00323 * 26.97408 * 7 2 1 9 9 C 1.41409 * 119.99931 * 206.98106 * 7 2 1 10 10 C 1.40782 * 120.21227 * 13.00653 * 9 7 2 11 11 C 1.37644 * 119.88446 * 179.69574 * 10 9 7 12 12 C 1.38532 * 120.32253 * 0.59101 * 11 10 9 13 13 C 1.39246 * 120.42740 * 359.70720 * 12 11 10 14 14 N 1.39938 * 119.94876 * 180.02562 * 13 12 11 15 15 C 1.34769 * 120.00232 * 206.95260 * 14 13 12 16 16 O 1.21288 * 120.00189 * 6.10200 * 15 14 13 17 17 C 1.50702 * 120.00381 * 186.10083 * 15 14 13 18 18 H 1.09003 * 107.52366 * 315.89726 * 17 15 14 19 19 C 1.51496 * 107.74028 * 71.74215 * 17 15 14 20 20 C 1.34150 * 116.84145 * 122.15697 * 19 17 15 21 21 C 1.46798 * 118.72961 * 359.97438 * 20 19 17 22 22 O 1.21544 * 119.02155 * 179.97438 * 21 20 19 23 23 N 1.33948 * 121.96358 * 0.02562 * 21 20 19 24 24 N 1.23310 * 123.76092 * 359.97438 * 23 21 20 25 25 C 1.38286 * 120.10886 * 359.97438 * 13 12 11 26 26 H 0.97005 * 119.99632 * 174.82075 * 1 2 3 27 27 H 1.07998 * 120.05353 * 0.02562 * 10 9 7 28 28 H 1.07994 * 119.83514 * 180.29775 * 11 10 9 29 29 H 1.07995 * 119.78480 * 179.73948 * 12 11 10 30 30 H 0.97001 * 119.99603 * 26.94701 * 14 13 12 31 31 H 1.08000 * 121.57868 * 302.12293 * 19 17 15 32 32 H 1.08005 * 120.63179 * 180.02562 * 20 19 17 33 33 H 1.07993 * 120.16376 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3309 2.1381 1.3881 5 1 3.6101 1.3996 -0.5351 6 1 1.5281 2.6016 -0.8528 7 6 2.0080 -1.2118 -0.0005 8 1 1.5562 -2.0961 -0.4252 9 6 3.3066 -1.2786 0.5550 10 6 3.7937 -0.2213 1.3468 11 6 5.0565 -0.2962 1.8894 12 6 5.8560 -1.4020 1.6504 13 6 5.3899 -2.4525 0.8642 14 7 6.2058 -3.5650 0.6296 15 6 6.0442 -4.2948 -0.4918 16 8 5.2696 -3.9259 -1.3491 17 6 6.8259 -5.5693 -0.6807 18 1 7.8543 -5.3715 -0.3780 19 6 6.2573 -6.6045 0.2680 20 6 5.7988 -7.7404 -0.2790 21 6 5.8760 -7.9033 -1.7358 22 8 5.4626 -8.9306 -2.2370 23 7 6.3894 -6.9541 -2.5293 24 7 6.8333 -5.8809 -2.1150 25 6 4.1217 -2.3988 0.3156 26 1 -0.4850 -0.8367 -0.0758 27 1 3.1756 0.6446 1.5324 28 1 5.4275 0.5131 2.5006 29 1 6.8469 -1.4498 2.0770 30 1 6.8877 -3.8108 1.2742 31 1 6.2232 -6.4362 1.3343 32 1 5.3802 -8.5197 0.3406 33 1 3.7591 -3.2132 -0.2940 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181705967.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:59 Heat of formation + Delta-G solvation = 38.338096 kcal Electronic energy + Delta-G solvation = -21105.073977 eV Core-core repulsion = 17711.974573 eV Total energy + Delta-G solvation = -3393.099404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.74827 -40.06855 -38.34203 -37.44532 -34.95523 -34.42891 -33.40852 -31.04357 -30.26483 -28.69689 -26.01641 -25.01998 -23.95755 -22.52828 -20.96482 -20.44048 -18.69846 -18.22560 -17.82106 -17.51503 -17.28948 -16.11845 -15.88586 -15.61945 -14.95557 -14.55605 -14.22175 -14.04645 -13.72528 -13.50185 -12.92943 -12.56566 -12.51152 -12.31246 -12.17014 -12.08915 -11.67570 -11.37859 -10.97947 -10.64446 -10.42130 -10.10699 -9.87683 -9.64402 -9.51168 -9.16891 -8.99967 -7.90246 -7.48272 -7.27783 -4.62740 -0.54350 0.82770 2.03906 2.56043 2.62218 2.73629 2.80250 3.12517 3.18388 3.33899 3.52194 3.53003 3.72077 3.93085 4.08306 4.32427 4.37536 4.41715 5.02764 5.16520 5.32801 5.38607 5.88821 6.10939 6.20629 6.41595 6.57089 6.68554 6.73117 7.11763 7.34058 7.39132 7.52184 7.64835 7.76713 7.77690 7.80673 8.14031 8.33431 8.48327 8.67345 9.82705 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.024536 B = 0.004190 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.906237 B = 6680.449191 C = 7317.232592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.043 3.957 3 Si 1.083 2.917 4 H -0.277 1.277 5 H -0.259 1.259 6 H -0.293 1.293 7 C -0.498 4.498 8 H 0.077 0.923 9 C 0.108 3.892 10 C -0.265 4.265 11 C -0.051 4.051 12 C -0.282 4.282 13 C 0.167 3.833 14 N -0.655 5.655 15 C 0.530 3.470 16 O -0.481 6.481 17 C -0.065 4.065 18 H 0.172 0.828 19 C -0.076 4.076 20 C -0.226 4.226 21 C 0.457 3.543 22 O -0.411 6.411 23 N -0.213 5.213 24 N 0.006 4.994 25 C -0.221 4.221 26 H 0.289 0.711 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.403 0.597 31 H 0.166 0.834 32 H 0.162 0.838 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.861 -8.407 4.565 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.180 4.180 3 Si 0.910 3.090 4 H -0.205 1.205 5 H -0.184 1.184 6 H -0.221 1.221 7 C -0.525 4.525 8 H 0.095 0.905 9 C 0.104 3.896 10 C -0.284 4.284 11 C -0.070 4.070 12 C -0.304 4.304 13 C 0.076 3.924 14 N -0.299 5.299 15 C 0.311 3.689 16 O -0.352 6.352 17 C -0.180 4.180 18 H 0.189 0.811 19 C -0.097 4.097 20 C -0.249 4.249 21 C 0.244 3.756 22 O -0.275 6.275 23 N -0.119 5.119 24 N 0.094 4.906 25 C -0.242 4.242 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.238 0.762 31 H 0.183 0.817 32 H 0.180 0.820 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.882 -7.064 2.727 14.943 hybrid contribution 0.091 -2.321 1.802 2.940 sum 12.973 -9.385 4.529 16.640 Atomic orbital electron populations 1.70566 1.08299 1.33549 1.29167 1.27472 0.95519 1.05086 0.89882 0.83475 0.76080 0.72350 0.77072 1.20507 1.18366 1.22138 1.20733 0.99635 0.98017 1.34138 0.90514 1.17539 0.91895 0.90611 0.89540 1.20899 0.97937 1.01304 1.08291 1.20300 0.93724 0.95781 0.97224 1.19860 1.00532 0.96756 1.13208 1.17451 0.89903 0.85974 0.99117 1.43300 1.37029 1.28351 1.21213 1.19194 0.83411 0.83379 0.82934 1.90877 1.34845 1.68565 1.40949 1.23105 1.05121 0.96871 0.92865 0.81130 1.24535 0.92437 0.91673 1.01013 1.23933 1.03959 1.00907 0.96122 1.21161 0.78658 0.87344 0.88427 1.90726 1.33871 1.25379 1.77520 1.72181 1.06061 0.99417 1.34243 1.77231 0.97202 1.07092 1.09091 1.20921 0.92697 1.02049 1.08565 0.89930 0.88429 0.88330 0.88631 0.76202 0.81691 0.82029 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.05 13.65 55.55 0.76 -20.29 16 2 C 0.04 1.12 5.39 -17.35 -0.09 1.02 16 3 Si 1.08 24.17 24.79 -169.99 -4.21 19.95 16 4 H -0.28 -5.82 6.66 56.52 0.38 -5.45 16 5 H -0.26 -5.78 6.75 56.52 0.38 -5.40 16 6 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.50 -13.53 9.42 -37.74 -0.36 -13.88 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 C 0.11 2.77 5.43 -106.85 -0.58 2.19 16 10 C -0.27 -6.27 7.40 -38.84 -0.29 -6.56 16 11 C -0.05 -1.05 10.02 -39.69 -0.40 -1.45 16 12 C -0.28 -5.31 9.95 -39.10 -0.39 -5.70 16 13 C 0.17 3.27 6.39 -83.76 -0.53 2.74 16 14 N -0.65 -9.07 5.36 -9.91 -0.05 -9.13 16 15 C 0.53 7.77 6.70 -10.99 -0.07 7.70 16 16 O -0.48 -9.81 13.77 5.55 0.08 -9.73 16 17 C -0.07 -0.64 3.67 -69.69 -0.26 -0.90 16 18 H 0.17 0.89 8.13 -51.93 -0.42 0.46 16 19 C -0.08 -0.60 9.74 -35.36 -0.34 -0.94 16 20 C -0.23 -2.17 10.20 -37.56 -0.38 -2.55 16 21 C 0.46 6.11 7.87 -13.17 -0.10 6.01 16 22 O -0.41 -6.50 17.91 5.33 0.10 -6.41 16 23 N -0.21 -2.98 11.32 30.12 0.34 -2.64 16 24 N 0.01 0.08 11.10 -6.38 -0.07 0.01 16 25 C -0.22 -5.26 8.43 -38.68 -0.33 -5.59 16 26 H 0.29 7.45 8.73 -40.82 -0.36 7.09 16 27 H 0.10 2.28 3.24 -52.49 -0.17 2.11 16 28 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.40 3.54 8.79 -40.82 -0.36 3.18 16 31 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.16 1.21 8.06 -52.48 -0.42 0.78 16 33 H 0.11 2.85 5.95 -52.49 -0.31 2.54 16 LS Contribution 294.14 15.07 4.43 4.43 Total: -1.00 -32.57 294.14 -5.33 -37.91 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -2.58 Total: 3.81 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -4.12 Total: -17.91 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.98 Total: -32.05 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.17 Total: -16.14 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -4.21 Total: 19.95 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.57 -5.33 -37.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181705967.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.245 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds