Wall clock time and date at job start Tue Mar 31 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 119.99834 * 2 1 4 4 H 1.48508 * 109.46844 * 82.47463 * 3 2 1 5 5 H 1.48496 * 109.46979 * 202.46822 * 3 2 1 6 6 H 1.48496 * 109.47242 * 322.47421 * 3 2 1 7 7 C 1.39932 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00323 * 26.97408 * 7 2 1 9 9 C 1.41409 * 119.99931 * 206.98106 * 7 2 1 10 10 C 1.40782 * 120.21227 * 13.00653 * 9 7 2 11 11 C 1.37644 * 119.88446 * 179.69574 * 10 9 7 12 12 C 1.38532 * 120.32253 * 0.59101 * 11 10 9 13 13 C 1.39246 * 120.42740 * 359.70720 * 12 11 10 14 14 N 1.39938 * 119.94876 * 180.02562 * 13 12 11 15 15 C 1.34769 * 120.00232 * 206.95260 * 14 13 12 16 16 O 1.21288 * 120.00189 * 6.10200 * 15 14 13 17 17 C 1.50702 * 120.00381 * 186.10083 * 15 14 13 18 18 H 1.09003 * 107.52366 * 315.89726 * 17 15 14 19 19 C 1.51496 * 107.74028 * 71.74215 * 17 15 14 20 20 C 1.34150 * 116.84145 * 122.15697 * 19 17 15 21 21 C 1.46798 * 118.72961 * 359.97438 * 20 19 17 22 22 O 1.21544 * 119.02155 * 179.97438 * 21 20 19 23 23 N 1.33948 * 121.96358 * 0.02562 * 21 20 19 24 24 N 1.23310 * 123.76092 * 359.97438 * 23 21 20 25 25 C 1.38286 * 120.10886 * 359.97438 * 13 12 11 26 26 H 0.97005 * 119.99632 * 174.82075 * 1 2 3 27 27 H 1.07998 * 120.05353 * 0.02562 * 10 9 7 28 28 H 1.07994 * 119.83514 * 180.29775 * 11 10 9 29 29 H 1.07995 * 119.78480 * 179.73948 * 12 11 10 30 30 H 0.97001 * 119.99603 * 26.94701 * 14 13 12 31 31 H 1.08000 * 121.57868 * 302.12293 * 19 17 15 32 32 H 1.08005 * 120.63179 * 180.02562 * 20 19 17 33 33 H 1.07993 * 120.16376 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3309 2.1381 1.3881 5 1 3.6101 1.3996 -0.5351 6 1 1.5281 2.6016 -0.8528 7 6 2.0080 -1.2118 -0.0005 8 1 1.5562 -2.0961 -0.4252 9 6 3.3066 -1.2786 0.5550 10 6 3.7937 -0.2213 1.3468 11 6 5.0565 -0.2962 1.8894 12 6 5.8560 -1.4020 1.6504 13 6 5.3899 -2.4525 0.8642 14 7 6.2058 -3.5650 0.6296 15 6 6.0442 -4.2948 -0.4918 16 8 5.2696 -3.9259 -1.3491 17 6 6.8259 -5.5693 -0.6807 18 1 7.8543 -5.3715 -0.3780 19 6 6.2573 -6.6045 0.2680 20 6 5.7988 -7.7404 -0.2790 21 6 5.8760 -7.9033 -1.7358 22 8 5.4626 -8.9306 -2.2370 23 7 6.3894 -6.9541 -2.5293 24 7 6.8333 -5.8809 -2.1150 25 6 4.1217 -2.3988 0.3156 26 1 -0.4850 -0.8367 -0.0758 27 1 3.1756 0.6446 1.5324 28 1 5.4275 0.5131 2.5006 29 1 6.8469 -1.4498 2.0770 30 1 6.8877 -3.8108 1.2742 31 1 6.2232 -6.4362 1.3343 32 1 5.3802 -8.5197 0.3406 33 1 3.7591 -3.2132 -0.2940 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181705967.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:59 Heat of formation + Delta-G solvation = 9.959682 kcal Electronic energy + Delta-G solvation = -21106.304557 eV Core-core repulsion = 17711.974573 eV Total energy + Delta-G solvation = -3394.329984 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.75432 -41.36222 -39.56045 -38.93584 -36.47280 -35.52051 -34.95028 -32.14044 -31.98928 -30.20837 -27.12094 -26.76829 -24.82373 -23.96801 -22.66499 -21.89476 -20.30557 -19.40008 -19.01039 -18.44121 -18.24025 -17.66144 -17.35559 -16.83309 -16.29485 -15.86677 -15.50438 -15.30608 -15.28271 -14.61419 -14.40880 -14.21344 -13.90401 -13.59350 -13.45895 -13.30441 -13.09161 -12.97838 -12.64526 -12.22295 -11.85290 -11.72477 -11.28508 -11.14385 -10.76746 -10.62276 -10.55925 -9.71671 -9.43175 -8.88579 -6.61003 -1.50328 0.02733 0.59521 0.86811 1.31563 1.41269 1.51326 1.58584 1.77932 1.87182 2.11994 2.14837 2.56350 2.59195 2.95127 3.23795 3.38045 3.54559 3.69117 4.33912 4.39156 4.45542 4.55316 4.61614 4.69517 4.85205 5.00469 5.02516 5.34463 5.52624 5.67550 5.73720 5.78619 5.86812 6.05637 6.35213 6.43623 6.61233 6.80813 6.81840 7.02971 7.84788 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.024536 B = 0.004190 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.906237 B = 6680.449191 C = 7317.232592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.010 3.990 3 Si 1.118 2.882 4 H -0.250 1.250 5 H -0.260 1.260 6 H -0.285 1.285 7 C -0.550 4.550 8 H 0.033 0.967 9 C 0.085 3.915 10 C -0.281 4.281 11 C -0.054 4.054 12 C -0.247 4.247 13 C 0.178 3.822 14 N -0.633 5.633 15 C 0.533 3.467 16 O -0.544 6.544 17 C -0.062 4.062 18 H 0.234 0.766 19 C -0.045 4.045 20 C -0.242 4.242 21 C 0.449 3.551 22 O -0.456 6.456 23 N -0.243 5.243 24 N -0.005 5.005 25 C -0.251 4.251 26 H 0.277 0.723 27 H 0.098 0.902 28 H 0.143 0.857 29 H 0.153 0.847 30 H 0.435 0.565 31 H 0.215 0.785 32 H 0.184 0.816 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.609 -7.530 8.019 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.205 4.205 3 Si 0.939 3.061 4 H -0.176 1.176 5 H -0.185 1.185 6 H -0.213 1.213 7 C -0.578 4.578 8 H 0.051 0.949 9 C 0.082 3.918 10 C -0.300 4.300 11 C -0.073 4.073 12 C -0.268 4.268 13 C 0.084 3.916 14 N -0.280 5.280 15 C 0.317 3.683 16 O -0.420 6.420 17 C -0.176 4.176 18 H 0.250 0.750 19 C -0.065 4.065 20 C -0.265 4.265 21 C 0.240 3.760 22 O -0.323 6.323 23 N -0.148 5.148 24 N 0.083 4.917 25 C -0.272 4.272 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.161 0.839 29 H 0.171 0.829 30 H 0.276 0.724 31 H 0.231 0.769 32 H 0.202 0.798 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 17.683 -6.217 6.226 19.751 hybrid contribution -1.056 -2.680 0.815 2.994 sum 16.627 -8.897 7.041 20.129 Atomic orbital electron populations 1.70638 1.08788 1.32719 1.32672 1.28602 0.95647 1.07413 0.88841 0.83082 0.74908 0.69509 0.78646 1.17559 1.18501 1.21290 1.20646 1.01779 0.97382 1.38019 0.94874 1.17751 0.91574 0.92345 0.90144 1.21104 0.99761 1.00684 1.08449 1.20869 0.92280 0.97587 0.96551 1.20544 1.02076 0.94429 1.09706 1.17478 0.88766 0.87857 0.97503 1.43043 1.36675 1.26559 1.21751 1.19827 0.82342 0.84125 0.82008 1.90895 1.37516 1.70302 1.43240 1.23289 1.07704 0.94586 0.91972 0.74999 1.25000 0.89350 0.89576 1.02570 1.23950 1.05763 1.02955 0.93817 1.21679 0.77475 0.86562 0.90324 1.90700 1.36282 1.26817 1.78518 1.72151 1.06989 1.00181 1.35518 1.77139 0.96617 1.06549 1.11356 1.20888 0.95056 1.01374 1.09915 0.91193 0.88432 0.83946 0.82912 0.72365 0.76867 0.79829 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.76 13.65 21.82 0.30 -46.46 16 2 C 0.01 0.57 5.39 85.25 0.46 1.02 16 3 Si 1.12 49.23 24.79 68.60 1.70 50.93 16 4 H -0.25 -9.79 6.66 99.48 0.66 -9.13 16 5 H -0.26 -11.33 6.75 99.48 0.67 -10.66 16 6 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.55 -32.27 9.42 23.46 0.22 -32.05 16 8 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 9 C 0.09 4.47 5.43 -21.30 -0.12 4.36 16 10 C -0.28 -12.76 7.40 22.75 0.17 -12.59 16 11 C -0.05 -1.93 10.02 22.20 0.22 -1.71 16 12 C -0.25 -7.60 9.95 22.58 0.22 -7.37 16 13 C 0.18 6.24 6.39 38.10 0.24 6.48 16 14 N -0.63 -14.14 5.36 -303.65 -1.63 -15.77 16 15 C 0.53 13.97 6.70 87.66 0.59 14.56 16 16 O -0.54 -22.24 13.77 -3.06 -0.04 -22.28 16 17 C -0.06 -0.95 3.67 43.70 0.16 -0.79 16 18 H 0.23 0.74 8.13 -2.39 -0.02 0.72 16 19 C -0.04 -0.49 9.74 25.01 0.24 -0.25 16 20 C -0.24 -4.04 10.20 23.58 0.24 -3.80 16 21 C 0.45 12.01 7.87 86.61 0.68 12.69 16 22 O -0.46 -15.05 17.91 -3.85 -0.07 -15.12 16 23 N -0.24 -6.80 11.32 -177.38 -2.01 -8.81 16 24 N 0.00 -0.12 11.10 -174.10 -1.93 -2.05 16 25 C -0.25 -12.02 8.43 22.85 0.19 -11.83 16 26 H 0.28 15.71 8.73 -92.70 -0.81 14.90 16 27 H 0.10 4.39 3.24 -2.91 -0.01 4.38 16 28 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 29 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 30 H 0.44 4.13 8.79 -92.71 -0.82 3.31 16 31 H 0.21 0.34 8.06 -2.91 -0.02 0.32 16 32 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.09 4.57 5.95 -2.91 -0.02 4.55 16 Total: -1.00 -82.63 294.14 0.10 -82.53 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.25 Total: 8.31 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 3.53 Total: -31.26 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -5.27 Total: -73.09 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -0.11 Total: -37.40 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 1.70 Total: 50.93 kcal Total: -82.63 0.10 -82.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181705967.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.487 kcal (2) G-P(sol) polarization free energy of solvation -82.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds