Wall clock time and date at job start Tue Mar 31 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86805 * 119.99774 * 2 1 4 4 H 1.48501 * 109.47203 * 270.00115 * 3 2 1 5 5 H 1.48504 * 109.46900 * 29.99975 * 3 2 1 6 6 H 1.48500 * 109.47131 * 149.99776 * 3 2 1 7 7 C 1.39932 * 120.00561 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00336 * 202.72442 * 7 2 1 9 9 C 1.41409 * 119.99502 * 22.72373 * 7 2 1 10 10 C 1.40780 * 120.20624 * 216.55910 * 9 7 2 11 11 C 1.37643 * 119.88262 * 179.76648 * 10 9 7 12 12 C 1.38532 * 120.32172 * 0.53348 * 11 10 9 13 13 C 1.39241 * 120.43146 * 359.69352 * 12 11 10 14 14 N 1.39932 * 119.94969 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99966 * 213.38173 * 14 13 12 16 16 O 1.21291 * 120.00308 * 4.11093 * 15 14 13 17 17 C 1.50703 * 120.00298 * 184.11141 * 15 14 13 18 18 H 1.09001 * 107.52198 * 39.99643 * 17 15 14 19 19 C 1.51489 * 107.74527 * 284.11452 * 17 15 14 20 20 C 1.34081 * 116.88805 * 237.82887 * 19 17 15 21 21 C 1.46805 * 118.71236 * 0.03597 * 20 19 17 22 22 O 1.21549 * 119.02119 * 179.97438 * 21 20 19 23 23 N 1.33950 * 121.95932 * 359.97438 * 21 20 19 24 24 N 1.23306 * 123.76509 * 359.97438 * 23 21 20 25 25 C 1.38290 * 120.10128 * 0.04885 * 13 12 11 26 26 H 0.96998 * 119.99981 * 187.54056 * 1 2 3 27 27 H 1.08001 * 120.06098 * 359.97438 * 10 9 7 28 28 H 1.08007 * 119.83991 * 180.22776 * 11 10 9 29 29 H 1.08009 * 119.78210 * 179.72330 * 12 11 10 30 30 H 0.96997 * 120.00103 * 33.37953 * 14 13 12 31 31 H 1.08001 * 121.57899 * 57.84628 * 19 17 15 32 32 H 1.08004 * 120.65156 * 180.02562 * 20 19 17 33 33 H 1.07999 * 120.15870 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0251 -1.2479 0.3618 9 6 1.3833 -2.3891 -0.4720 10 6 1.6415 -3.6260 0.1487 11 6 1.0261 -4.7670 -0.3136 12 6 0.1617 -4.7065 -1.3945 13 6 -0.0995 -3.4909 -2.0215 14 7 -0.9747 -3.4413 -3.1122 15 6 -0.7635 -2.5557 -4.1059 16 8 0.2253 -1.8534 -4.0924 17 6 -1.7558 -2.4380 -5.2340 18 1 -2.7538 -2.5156 -4.8026 19 6 -1.5556 -3.6271 -6.1510 20 6 -1.2679 -3.3622 -7.4335 21 6 -1.1665 -1.9607 -7.8585 22 8 -0.9055 -1.7141 -9.0198 23 7 -1.3531 -0.9455 -7.0047 24 7 -1.6215 -1.0950 -5.8106 25 6 0.5051 -2.3327 -1.5682 26 1 -0.4850 -0.8328 0.1102 27 1 2.3186 -3.6790 0.9884 28 1 1.2218 -5.7150 0.1655 29 1 -0.3130 -5.6080 -1.7530 30 1 -1.7334 -4.0443 -3.1530 31 1 -1.6408 -4.6411 -5.7891 32 1 -1.1136 -4.1642 -8.1402 33 1 0.3035 -1.3895 -2.0540 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181705968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:02 Heat of formation + Delta-G solvation = 30.228836 kcal Electronic energy + Delta-G solvation = -21290.626581 eV Core-core repulsion = 17897.175533 eV Total energy + Delta-G solvation = -3393.451048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67936 -39.97056 -38.28657 -37.38769 -34.85083 -34.36395 -33.37957 -30.96617 -29.47834 -28.54509 -25.92955 -25.13929 -23.91062 -22.33745 -21.21581 -20.15008 -18.65986 -18.13982 -17.59617 -17.46568 -17.23492 -15.89243 -15.71570 -15.04812 -14.74067 -14.52215 -14.28348 -14.08187 -13.63223 -13.48243 -13.00557 -12.62273 -12.34754 -12.25153 -12.21104 -11.96984 -11.31053 -11.05875 -10.84746 -10.66286 -10.37010 -10.32243 -9.93688 -9.58327 -9.48545 -9.25224 -8.95156 -7.64378 -7.37760 -7.07396 -4.48056 -0.48167 0.87403 2.12310 2.61430 2.68400 2.80023 2.87923 3.22649 3.23540 3.31186 3.40845 3.60058 3.77393 4.09476 4.12972 4.41564 4.44091 4.59234 5.05614 5.20588 5.34165 5.36930 5.90873 6.10972 6.32877 6.59603 6.66118 6.73498 6.81779 7.19475 7.39363 7.55782 7.73000 7.76469 7.82443 7.85165 8.04815 8.17653 8.33237 8.67278 8.87590 10.13538 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.016741 B = 0.005141 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.153219 B = 5444.632274 C = 6723.267298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.043 3.957 3 Si 1.065 2.935 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.077 0.923 9 C 0.108 3.892 10 C -0.225 4.225 11 C -0.074 4.074 12 C -0.264 4.264 13 C 0.151 3.849 14 N -0.656 5.656 15 C 0.531 3.469 16 O -0.482 6.482 17 C -0.065 4.065 18 H 0.172 0.828 19 C -0.075 4.075 20 C -0.227 4.227 21 C 0.458 3.542 22 O -0.413 6.413 23 N -0.214 5.214 24 N 0.010 4.990 25 C -0.190 4.190 26 H 0.293 0.707 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.402 0.598 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 -7.897 -7.464 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.178 4.178 3 Si 0.889 3.111 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.095 0.905 9 C 0.105 3.895 10 C -0.245 4.245 11 C -0.093 4.093 12 C -0.285 4.285 13 C 0.059 3.941 14 N -0.301 5.301 15 C 0.312 3.688 16 O -0.353 6.353 17 C -0.180 4.180 18 H 0.189 0.811 19 C -0.096 4.096 20 C -0.250 4.250 21 C 0.245 3.755 22 O -0.277 6.277 23 N -0.120 5.120 24 N 0.097 4.903 25 C -0.211 4.211 26 H 0.106 0.894 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.237 0.763 31 H 0.182 0.818 32 H 0.179 0.821 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.510 -4.594 -8.244 11.465 hybrid contribution -0.260 -3.681 -0.082 3.691 sum -6.770 -8.275 -8.325 13.550 Atomic orbital electron populations 1.70412 1.08067 1.33759 1.30202 1.26905 0.95670 1.04053 0.91181 0.83643 0.75354 0.73831 0.78311 1.19848 1.20190 1.20242 1.20496 1.01818 0.93549 1.39958 0.90455 1.17579 0.89874 0.93004 0.89084 1.21158 1.07107 0.93569 1.02673 1.20393 0.96382 0.96884 0.95659 1.19994 1.09825 0.94192 1.04506 1.17482 0.94350 0.94748 0.87500 1.43264 1.29493 1.37219 1.20081 1.19173 0.85832 0.81899 0.81882 1.90894 1.27261 1.41655 1.75480 1.23121 1.04813 0.91845 0.98207 0.81104 1.24504 0.92493 0.99367 0.93257 1.23911 1.04348 0.98304 0.98422 1.21179 0.77154 0.87785 0.89404 1.90720 1.32507 1.87007 1.17492 1.72202 1.07300 1.32035 1.00480 1.77284 0.91968 1.16820 1.04178 1.21242 1.05061 0.96318 0.98524 0.89414 0.88515 0.88598 0.88816 0.76330 0.81803 0.82093 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.56 12.70 55.55 0.71 -20.86 16 2 C 0.04 1.11 4.95 -17.35 -0.09 1.02 16 3 Si 1.06 22.59 29.99 -169.99 -5.10 17.49 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.53 -14.19 8.94 -37.74 -0.34 -14.53 16 8 H 0.08 2.03 7.94 -52.49 -0.42 1.61 16 9 C 0.11 2.81 5.02 -106.85 -0.54 2.28 16 10 C -0.23 -5.29 9.79 -38.84 -0.38 -5.67 16 11 C -0.07 -1.52 10.02 -39.69 -0.40 -1.92 16 12 C -0.26 -5.12 9.97 -39.10 -0.39 -5.51 16 13 C 0.15 3.11 6.28 -83.77 -0.53 2.59 16 14 N -0.66 -10.00 5.34 -9.91 -0.05 -10.06 16 15 C 0.53 8.61 6.65 -10.98 -0.07 8.54 16 16 O -0.48 -10.63 14.15 5.55 0.08 -10.55 16 17 C -0.07 -0.73 3.67 -69.69 -0.26 -0.99 16 18 H 0.17 1.20 8.13 -51.93 -0.42 0.78 16 19 C -0.08 -0.64 9.74 -35.38 -0.34 -0.98 16 20 C -0.23 -2.25 10.20 -37.58 -0.38 -2.63 16 21 C 0.46 6.39 7.87 -13.17 -0.10 6.29 16 22 O -0.41 -6.71 17.91 5.32 0.10 -6.61 16 23 N -0.21 -3.23 11.32 30.12 0.34 -2.89 16 24 N 0.01 0.15 11.14 -6.38 -0.07 0.07 16 25 C -0.19 -4.75 6.74 -38.68 -0.26 -5.02 16 26 H 0.29 8.00 7.06 -40.82 -0.29 7.71 16 27 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 28 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 29 H 0.09 1.50 8.06 -52.48 -0.42 1.07 16 30 H 0.40 4.08 8.82 -40.82 -0.36 3.72 16 31 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.16 1.21 8.06 -52.48 -0.42 0.78 16 33 H 0.12 3.33 5.57 -52.49 -0.29 3.04 16 LS Contribution 301.51 15.07 4.54 4.54 Total: -1.00 -32.97 301.51 -6.22 -39.19 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -2.69 Total: 6.19 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -4.07 Total: -16.53 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.92 Total: -33.73 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.17 Total: -17.16 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.10 Total: 17.49 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.97 -6.22 -39.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181705968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.416 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds