Wall clock time and date at job start Tue Mar 31 2020 05:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86805 * 119.99774 * 2 1 4 4 H 1.48501 * 109.47203 * 270.00115 * 3 2 1 5 5 H 1.48504 * 109.46900 * 29.99975 * 3 2 1 6 6 H 1.48500 * 109.47131 * 149.99776 * 3 2 1 7 7 C 1.39932 * 120.00561 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00336 * 202.72442 * 7 2 1 9 9 C 1.41409 * 119.99502 * 22.72373 * 7 2 1 10 10 C 1.40780 * 120.20624 * 216.55910 * 9 7 2 11 11 C 1.37643 * 119.88262 * 179.76648 * 10 9 7 12 12 C 1.38532 * 120.32172 * 0.53348 * 11 10 9 13 13 C 1.39241 * 120.43146 * 359.69352 * 12 11 10 14 14 N 1.39932 * 119.94969 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99966 * 213.38173 * 14 13 12 16 16 O 1.21291 * 120.00308 * 4.11093 * 15 14 13 17 17 C 1.50703 * 120.00298 * 184.11141 * 15 14 13 18 18 H 1.09001 * 107.52198 * 39.99643 * 17 15 14 19 19 C 1.51489 * 107.74527 * 284.11452 * 17 15 14 20 20 C 1.34081 * 116.88805 * 237.82887 * 19 17 15 21 21 C 1.46805 * 118.71236 * 0.03597 * 20 19 17 22 22 O 1.21549 * 119.02119 * 179.97438 * 21 20 19 23 23 N 1.33950 * 121.95932 * 359.97438 * 21 20 19 24 24 N 1.23306 * 123.76509 * 359.97438 * 23 21 20 25 25 C 1.38290 * 120.10128 * 0.04885 * 13 12 11 26 26 H 0.96998 * 119.99981 * 187.54056 * 1 2 3 27 27 H 1.08001 * 120.06098 * 359.97438 * 10 9 7 28 28 H 1.08007 * 119.83991 * 180.22776 * 11 10 9 29 29 H 1.08009 * 119.78210 * 179.72330 * 12 11 10 30 30 H 0.96997 * 120.00103 * 33.37953 * 14 13 12 31 31 H 1.08001 * 121.57899 * 57.84628 * 19 17 15 32 32 H 1.08004 * 120.65156 * 180.02562 * 20 19 17 33 33 H 1.07999 * 120.15870 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0251 -1.2479 0.3618 9 6 1.3833 -2.3891 -0.4720 10 6 1.6415 -3.6260 0.1487 11 6 1.0261 -4.7670 -0.3136 12 6 0.1617 -4.7065 -1.3945 13 6 -0.0995 -3.4909 -2.0215 14 7 -0.9747 -3.4413 -3.1122 15 6 -0.7635 -2.5557 -4.1059 16 8 0.2253 -1.8534 -4.0924 17 6 -1.7558 -2.4380 -5.2340 18 1 -2.7538 -2.5156 -4.8026 19 6 -1.5556 -3.6271 -6.1510 20 6 -1.2679 -3.3622 -7.4335 21 6 -1.1665 -1.9607 -7.8585 22 8 -0.9055 -1.7141 -9.0198 23 7 -1.3531 -0.9455 -7.0047 24 7 -1.6215 -1.0950 -5.8106 25 6 0.5051 -2.3327 -1.5682 26 1 -0.4850 -0.8328 0.1102 27 1 2.3186 -3.6790 0.9884 28 1 1.2218 -5.7150 0.1655 29 1 -0.3130 -5.6080 -1.7530 30 1 -1.7334 -4.0443 -3.1530 31 1 -1.6408 -4.6411 -5.7891 32 1 -1.1136 -4.1642 -8.1402 33 1 0.3035 -1.3895 -2.0540 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181705968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:01 Heat of formation + Delta-G solvation = 3.017163 kcal Electronic energy + Delta-G solvation = -21291.806568 eV Core-core repulsion = 17897.175533 eV Total energy + Delta-G solvation = -3394.631034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.75023 -41.33697 -39.55246 -38.91705 -36.42003 -35.46874 -34.94990 -32.07377 -31.27347 -30.10596 -27.14511 -26.88246 -24.80993 -23.82607 -22.93276 -21.66732 -20.20361 -19.30323 -18.97875 -18.42917 -18.23450 -17.43198 -16.98275 -16.62281 -16.13320 -15.83865 -15.73629 -15.27555 -15.18248 -14.83650 -14.38684 -14.23428 -13.89615 -13.60472 -13.29604 -13.10741 -12.96511 -12.79354 -12.37933 -12.33629 -11.99406 -11.69775 -11.45690 -11.05813 -10.83123 -10.68602 -10.54292 -9.45391 -9.20976 -8.86505 -6.46465 -1.50815 0.03985 0.60447 0.92419 1.38280 1.47129 1.51927 1.61561 1.73713 1.88422 2.15139 2.33782 2.56954 2.71983 2.96518 3.24234 3.38812 3.51541 3.66591 4.36467 4.40310 4.46896 4.55192 4.70157 4.72788 4.91379 5.04524 5.05604 5.54749 5.61502 5.74344 5.80622 5.85935 5.89289 6.29480 6.33258 6.37592 6.78116 6.82635 6.97924 7.02692 8.15330 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.016741 B = 0.005141 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.153219 B = 5444.632274 C = 6723.267298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.007 3.993 3 Si 1.108 2.892 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.577 4.577 8 H 0.066 0.934 9 C 0.075 3.925 10 C -0.242 4.242 11 C -0.074 4.074 12 C -0.234 4.234 13 C 0.154 3.846 14 N -0.636 5.636 15 C 0.533 3.467 16 O -0.547 6.547 17 C -0.063 4.063 18 H 0.224 0.776 19 C -0.043 4.043 20 C -0.236 4.236 21 C 0.448 3.552 22 O -0.454 6.454 23 N -0.242 5.242 24 N -0.012 5.012 25 C -0.215 4.215 26 H 0.278 0.722 27 H 0.096 0.904 28 H 0.138 0.862 29 H 0.149 0.851 30 H 0.433 0.567 31 H 0.219 0.781 32 H 0.191 0.809 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.740 -11.702 -7.827 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.207 4.207 3 Si 0.926 3.074 4 H -0.203 1.203 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.606 4.606 8 H 0.084 0.916 9 C 0.072 3.928 10 C -0.262 4.262 11 C -0.092 4.092 12 C -0.255 4.255 13 C 0.061 3.939 14 N -0.283 5.283 15 C 0.317 3.683 16 O -0.422 6.422 17 C -0.177 4.177 18 H 0.240 0.760 19 C -0.063 4.063 20 C -0.259 4.259 21 C 0.239 3.761 22 O -0.321 6.321 23 N -0.148 5.148 24 N 0.077 4.923 25 C -0.236 4.236 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.156 0.844 29 H 0.167 0.833 30 H 0.273 0.727 31 H 0.236 0.764 32 H 0.208 0.792 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.177 -8.450 -8.596 14.566 hybrid contribution 0.178 -2.774 0.029 2.780 sum -7.999 -11.224 -8.567 16.228 Atomic orbital electron populations 1.70516 1.08592 1.32625 1.33601 1.28060 0.95846 1.06813 0.90013 0.83125 0.75235 0.70760 0.78235 1.20286 1.19088 1.18282 1.20633 1.01858 0.95198 1.42940 0.91631 1.17896 0.90982 0.93920 0.89968 1.21361 1.07807 0.94004 1.03051 1.20894 0.95234 0.97384 0.95720 1.20619 1.07312 0.95210 1.02365 1.17566 0.94012 0.93868 0.88456 1.43030 1.29500 1.37617 1.18202 1.19840 0.85546 0.80398 0.82542 1.90896 1.30350 1.43871 1.77070 1.23273 1.05552 0.91923 0.96965 0.76039 1.24962 0.89589 1.00112 0.91633 1.23943 1.05831 0.96212 0.99931 1.21716 0.76049 0.89618 0.88764 1.90696 1.34978 1.87713 1.18752 1.72152 1.07761 1.33835 1.01042 1.77211 0.91621 1.19444 1.04062 1.21076 1.06806 0.96814 0.98946 0.91042 0.88601 0.84406 0.83302 0.72677 0.76390 0.79229 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.11 12.70 21.82 0.28 -46.83 16 2 C 0.01 0.39 4.95 85.25 0.42 0.81 16 3 Si 1.11 47.80 29.99 68.60 2.06 49.86 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.58 -32.78 8.94 23.46 0.21 -32.57 16 8 H 0.07 3.68 7.94 -2.92 -0.02 3.66 16 9 C 0.08 4.05 5.02 -21.31 -0.11 3.94 16 10 C -0.24 -11.30 9.79 22.75 0.22 -11.08 16 11 C -0.07 -2.74 10.02 22.20 0.22 -2.51 16 12 C -0.23 -7.83 9.97 22.58 0.23 -7.61 16 13 C 0.15 5.95 6.28 38.10 0.24 6.19 16 14 N -0.64 -16.78 5.34 -303.65 -1.62 -18.40 16 15 C 0.53 16.06 6.65 87.66 0.58 16.64 16 16 O -0.55 -24.42 14.15 -3.06 -0.04 -24.47 16 17 C -0.06 -1.20 3.67 43.70 0.16 -1.04 16 18 H 0.22 1.91 8.13 -2.39 -0.02 1.89 16 19 C -0.04 -0.49 9.74 24.99 0.24 -0.25 16 20 C -0.24 -3.89 10.20 23.56 0.24 -3.65 16 21 C 0.45 12.29 7.87 86.61 0.68 12.97 16 22 O -0.45 -15.04 17.91 -3.87 -0.07 -15.10 16 23 N -0.24 -7.35 11.32 -177.36 -2.01 -9.36 16 24 N -0.01 -0.33 11.14 -174.11 -1.94 -2.27 16 25 C -0.21 -10.95 6.74 22.85 0.15 -10.79 16 26 H 0.28 16.11 7.06 -92.71 -0.65 15.45 16 27 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 28 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 29 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.43 5.92 8.82 -92.71 -0.82 5.10 16 31 H 0.22 0.21 8.06 -2.91 -0.02 0.19 16 32 H 0.19 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.09 5.02 5.57 -2.91 -0.02 5.01 16 Total: -1.00 -82.12 301.51 0.62 -81.50 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.47 Total: 14.03 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 3.50 Total: -28.95 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -5.29 Total: -76.86 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -0.11 Total: -39.57 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.06 Total: 49.86 kcal Total: -82.12 0.62 -81.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181705968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.514 kcal (2) G-P(sol) polarization free energy of solvation -82.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds