Wall clock time and date at job start Tue Mar 31 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 120.00375 * 2 1 4 4 H 1.48500 * 109.47475 * 270.01173 * 3 2 1 5 5 H 1.48504 * 109.46740 * 30.00528 * 3 2 1 6 6 H 1.48494 * 109.47524 * 150.00339 * 3 2 1 7 7 C 1.39939 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99661 * 163.20884 * 7 2 1 9 9 C 1.41436 * 120.00198 * 343.21351 * 7 2 1 10 10 C 1.40787 * 120.17884 * 154.53669 * 9 7 2 11 11 C 1.37713 * 120.04214 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41629 * 359.95654 * 11 10 9 13 13 C 1.39900 * 120.35452 * 0.04243 * 12 11 10 14 14 C 1.47847 * 120.02420 * 180.02562 * 13 12 11 15 15 O 1.21560 * 119.99833 * 179.97438 * 14 13 12 16 16 N 1.34779 * 120.00373 * 359.97438 * 14 13 12 17 17 C 1.39516 * 119.99986 * 184.29113 * 16 14 13 18 18 C 1.39542 * 121.06747 * 146.04685 * 17 16 14 19 19 N 1.31672 * 119.84887 * 179.70434 * 18 17 16 20 20 N 1.28309 * 122.33531 * 0.58740 * 19 18 17 21 21 C 1.32430 * 122.30453 * 359.69964 * 20 19 18 22 22 O 1.35700 * 120.09857 * 180.02562 * 21 20 19 23 23 C 1.39010 * 119.80626 * 359.97438 * 21 20 19 24 24 C 1.39048 * 119.94753 * 359.97438 * 13 12 11 25 25 H 0.96998 * 119.99817 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.97815 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.79419 * 179.97438 * 11 10 9 28 28 H 1.08001 * 119.82105 * 180.02562 * 12 11 10 29 29 H 0.96995 * 119.99854 * 4.28376 * 16 14 13 30 30 H 1.08001 * 120.07625 * 359.97438 * 18 17 16 31 31 H 0.96698 * 114.00037 * 269.97599 * 22 21 20 32 32 H 1.07995 * 121.07701 * 179.97438 * 23 21 20 33 33 H 1.08002 * 120.20298 * 180.27754 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4897 2.0466 -1.4000 5 1 1.4398 2.6526 0.7002 6 1 3.5399 1.4401 0.6999 7 6 2.0079 -1.2119 -0.0005 8 1 3.0534 -1.2317 -0.2708 9 6 1.3460 -2.4109 0.3527 10 6 1.8152 -3.6472 -0.1305 11 6 1.1682 -4.8128 0.2148 12 6 0.0560 -4.7795 1.0372 13 6 -0.4248 -3.5604 1.5270 14 6 -1.6135 -3.5333 2.4057 15 8 -2.0306 -2.4739 2.8314 16 7 -2.2346 -4.6833 2.7348 17 6 -3.4075 -4.6513 3.4897 18 6 -4.4195 -5.5907 3.2881 19 7 -5.5141 -5.5416 4.0183 20 7 -5.7001 -4.6448 4.9168 21 6 -4.8016 -3.7077 5.1780 22 8 -5.0447 -2.7808 6.1389 23 6 -3.6083 -3.6768 4.4658 24 6 0.2168 -2.3744 1.1876 25 1 -0.4850 0.8400 0.0004 26 1 2.6831 -3.6814 -0.7723 27 1 1.5314 -5.7589 -0.1585 28 1 -0.4437 -5.6995 1.3022 29 1 -1.8663 -5.5331 2.4467 30 1 -4.3033 -6.3589 2.5379 31 1 -5.4889 -1.9854 5.8148 32 1 -2.8615 -2.9217 4.6617 33 1 -0.1482 -1.4314 1.5670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188667148.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:52 Heat of formation + Delta-G solvation = 5.366436 kcal Electronic energy + Delta-G solvation = -20946.827128 eV Core-core repulsion = 17552.297966 eV Total energy + Delta-G solvation = -3394.529162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38890 -39.67953 -37.68277 -37.33095 -35.34808 -33.92862 -31.79068 -31.34962 -29.99162 -29.63698 -25.63365 -24.99351 -24.27908 -22.45776 -21.18124 -20.16669 -19.11768 -18.49300 -17.47434 -17.01838 -16.59712 -16.07542 -15.67861 -15.19489 -14.87318 -14.58531 -14.19762 -13.93838 -13.47654 -13.41463 -12.93169 -12.72022 -12.28510 -11.87226 -11.61556 -11.33980 -11.22862 -11.04315 -10.95023 -10.65099 -10.39881 -9.92529 -9.88821 -9.81108 -9.38578 -9.22720 -8.83636 -7.88669 -7.72643 -6.97016 -4.59543 0.64857 0.75793 1.87939 2.63305 2.90590 2.97660 2.99057 3.04196 3.19505 3.48375 3.56605 3.79286 4.25367 4.39686 4.43494 4.83671 4.98154 5.29982 5.37969 5.39420 5.73303 5.84639 5.97114 6.04113 6.40218 6.51159 6.73702 6.79151 7.01261 7.14581 7.22740 7.29430 7.48653 7.60644 7.76305 7.95741 8.29818 8.33013 8.61648 8.61680 8.63615 9.97778 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.020874 B = 0.004201 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.075642 B = 6663.513757 C = 7788.842108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.456 4.456 8 H 0.083 0.917 9 C 0.099 3.901 10 C -0.206 4.206 11 C -0.094 4.094 12 C -0.220 4.220 13 C -0.132 4.132 14 C 0.568 3.432 15 O -0.519 6.519 16 N -0.668 5.668 17 C 0.181 3.819 18 C 0.005 3.995 19 N -0.201 5.201 20 N -0.285 5.285 21 C 0.278 3.722 22 O -0.475 6.475 23 C -0.156 4.156 24 C -0.085 4.085 25 H 0.286 0.714 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.419 0.581 30 H 0.178 0.822 31 H 0.407 0.593 32 H 0.171 0.829 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 -5.590 3.909 7.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.485 4.485 8 H 0.102 0.898 9 C 0.096 3.904 10 C -0.226 4.226 11 C -0.112 4.112 12 C -0.240 4.240 13 C -0.135 4.135 14 C 0.361 3.639 15 O -0.394 6.394 16 N -0.315 5.315 17 C 0.073 3.927 18 C -0.164 4.164 19 N -0.044 5.044 20 N -0.139 5.139 21 C 0.093 3.907 22 O -0.281 6.281 23 C -0.188 4.188 24 C -0.105 4.105 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.259 0.741 30 H 0.195 0.805 31 H 0.265 0.735 32 H 0.188 0.812 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.534 -5.577 4.927 9.274 hybrid contribution 1.701 1.288 -0.900 2.316 sum -3.833 -4.289 4.026 7.021 Atomic orbital electron populations 1.69762 1.07646 1.30029 1.33350 1.25986 0.94813 1.01718 0.92135 0.86245 0.80614 0.80217 0.79392 1.19292 1.19866 1.18265 1.19628 0.97955 0.90842 1.40064 0.89845 1.17595 0.91087 0.92612 0.89107 1.21163 1.03376 0.92778 1.05304 1.20449 0.95758 0.96930 0.98058 1.20311 1.01586 0.94389 1.07735 1.19240 0.96095 0.95857 1.02336 1.19203 0.83354 0.81964 0.79394 1.90710 1.65141 1.30138 1.53421 1.43673 1.23455 1.11717 1.52680 1.18867 0.88291 0.95280 0.90309 1.24327 0.90097 1.00678 1.01263 1.72897 1.17690 1.13670 1.00153 1.72767 1.27207 1.01926 1.12005 1.20688 0.90552 0.91354 0.88064 1.84740 1.81157 1.29967 1.32194 1.22742 1.00439 1.02237 0.93425 1.21645 0.96266 0.96098 0.96514 0.90266 0.88312 0.88542 0.89093 0.74132 0.80493 0.73455 0.81195 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.53 10.96 55.55 0.61 -18.92 16 2 C 0.07 1.73 5.15 -17.34 -0.09 1.64 16 3 Si 0.91 17.71 29.59 -169.99 -5.03 12.68 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.46 -11.23 9.05 -37.73 -0.34 -11.57 16 8 H 0.08 1.95 7.90 -52.49 -0.41 1.53 16 9 C 0.10 2.42 5.56 -106.87 -0.59 1.82 16 10 C -0.21 -4.50 9.78 -38.81 -0.38 -4.88 16 11 C -0.09 -1.80 10.01 -39.73 -0.40 -2.20 16 12 C -0.22 -4.09 9.55 -38.91 -0.37 -4.46 16 13 C -0.13 -2.78 5.87 -105.04 -0.62 -3.40 16 14 C 0.57 10.88 7.64 -12.33 -0.09 10.78 16 15 O -0.52 -11.29 13.79 5.31 0.07 -11.21 16 16 N -0.67 -9.66 5.30 -10.52 -0.06 -9.71 16 17 C 0.18 2.57 6.37 -83.45 -0.53 2.04 16 18 C 0.01 0.07 11.27 -17.13 -0.19 -0.13 16 19 N -0.20 -2.94 11.48 30.70 0.35 -2.58 16 20 N -0.29 -4.42 11.52 30.47 0.35 -4.07 16 21 C 0.28 4.04 7.85 -17.01 -0.13 3.91 16 22 O -0.48 -5.87 13.57 -18.80 -0.26 -6.12 16 23 C -0.16 -2.36 8.81 -38.87 -0.34 -2.70 16 24 C -0.09 -2.08 8.22 -38.44 -0.32 -2.40 16 25 H 0.29 6.56 8.30 -40.82 -0.34 6.22 16 26 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 27 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.09 1.31 6.39 -52.49 -0.34 0.98 16 29 H 0.42 4.77 6.85 -40.82 -0.28 4.49 16 30 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.41 3.01 9.06 45.56 0.41 3.42 16 32 H 0.17 2.79 6.30 -52.49 -0.33 2.46 16 33 H 0.14 3.57 5.78 -52.49 -0.30 3.26 16 LS Contribution 297.42 15.07 4.48 4.48 Total: -1.00 -29.46 297.42 -5.53 -34.99 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -1.65 Total: 12.02 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -4.40 Total: -11.54 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 1.26 Total: -35.30 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.18 Total: -17.34 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.46 -5.53 -34.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188667148.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.352 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds