Wall clock time and date at job start Tue Mar 31 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86807 * 119.99808 * 2 1 4 4 H 1.48502 * 109.47095 * 270.00475 * 3 2 1 5 5 H 1.48499 * 109.46796 * 30.00330 * 3 2 1 6 6 H 1.48496 * 109.47063 * 150.00579 * 3 2 1 7 7 C 1.39928 * 120.00481 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00292 * 196.78562 * 7 2 1 9 9 C 1.41413 * 119.99840 * 16.77863 * 7 2 1 10 10 C 1.40780 * 120.21035 * 205.14297 * 9 7 2 11 11 C 1.37648 * 119.88709 * 180.02562 * 10 9 7 12 12 C 1.38523 * 120.32424 * 359.72936 * 11 10 9 13 13 C 1.39269 * 120.42731 * 0.55237 * 12 11 10 14 14 N 1.39856 * 119.94930 * 179.71936 * 13 12 11 15 15 C 1.34775 * 120.00069 * 325.54247 * 14 13 12 16 16 O 1.21565 * 120.00135 * 354.88516 * 15 14 13 17 17 C 1.47791 * 120.00007 * 174.61549 * 15 14 13 18 18 C 1.40085 * 121.18106 * 0.26669 * 17 15 14 19 19 C 1.38473 * 117.88490 * 180.02562 * 18 17 15 20 20 N 1.31881 * 120.13760 * 0.02562 * 19 18 17 21 21 N 1.28278 * 122.62795 * 359.97438 * 20 19 18 22 22 C 1.32495 * 122.21866 * 359.69991 * 21 20 19 23 23 O 1.35444 * 120.25442 * 180.29939 * 22 21 20 24 24 C 1.38301 * 120.10021 * 359.44888 * 13 12 11 25 25 H 0.96999 * 120.00448 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.05424 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.83170 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.78569 * 180.26640 * 12 11 10 29 29 H 0.96998 * 119.99930 * 145.53751 * 14 13 12 30 30 H 1.08005 * 121.05769 * 359.97438 * 18 17 15 31 31 H 1.08006 * 119.93474 * 180.02562 * 19 18 17 32 32 H 0.96703 * 113.99958 * 270.28873 * 23 22 21 33 33 H 1.07999 * 120.16123 * 180.25333 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0466 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5399 1.4403 0.6999 7 6 2.0080 -1.2118 -0.0005 8 1 3.0535 -1.2318 0.2695 9 6 1.3462 -2.4102 -0.3546 10 6 1.8189 -3.6478 0.1216 11 6 1.1699 -4.8104 -0.2277 12 6 0.0497 -4.7686 -1.0414 13 6 -0.4260 -3.5522 -1.5248 14 7 -1.5544 -3.5221 -2.3504 15 6 -1.7789 -4.5256 -3.2217 16 8 -0.9548 -5.4091 -3.3567 17 6 -3.0295 -4.5552 -4.0086 18 6 -3.9958 -3.5501 -3.8727 19 6 -5.1425 -3.6458 -4.6431 20 7 -5.3006 -4.6592 -5.4721 21 7 -4.4241 -5.5861 -5.6065 22 6 -3.2889 -5.5893 -4.9233 23 8 -2.3883 -6.5852 -5.1008 24 6 0.2125 -2.3733 -1.1849 25 1 -0.4851 0.8400 0.0004 26 1 2.6893 -3.6850 0.7598 27 1 1.5331 -5.7592 0.1385 28 1 -0.4554 -5.6857 -1.3065 29 1 -2.1756 -2.7791 -2.2960 30 1 -3.8515 -2.7273 -3.1882 31 1 -5.9090 -2.8889 -4.5650 32 1 -2.5175 -7.3419 -4.5127 33 1 -0.1580 -1.4291 -1.5559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192395828.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:38 Heat of formation + Delta-G solvation = 12.119591 kcal Electronic energy + Delta-G solvation = -21107.335065 eV Core-core repulsion = 17713.098741 eV Total energy + Delta-G solvation = -3394.236324 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.52886 -39.63908 -37.79574 -37.18118 -34.55712 -33.81115 -33.12064 -31.66458 -29.66315 -28.62097 -25.80388 -25.33768 -24.41221 -21.96744 -21.31164 -19.95201 -19.26863 -18.09066 -18.08755 -17.34562 -16.30231 -15.75610 -15.51030 -15.07480 -14.87371 -14.72951 -14.40030 -14.12001 -13.60492 -13.17849 -12.87643 -12.47087 -12.27746 -11.76261 -11.64420 -11.40942 -11.22266 -10.88649 -10.77351 -10.53635 -10.29925 -9.98640 -9.93241 -9.85752 -9.59294 -9.30794 -9.10661 -7.50205 -7.16894 -6.81550 -4.47767 0.03571 0.48424 2.44088 2.74716 2.92207 3.01301 3.04783 3.11332 3.17955 3.20380 3.50908 3.85754 3.93109 4.12090 4.41498 4.52250 4.63194 4.83929 5.15761 5.48910 5.56493 5.67963 6.15267 6.47175 6.51039 6.72263 6.89425 6.94424 7.13104 7.22952 7.44596 7.50669 7.78925 7.90522 7.96637 8.16014 8.31994 8.34102 8.55073 8.77929 8.82938 10.08565 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.004208 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.746277 B = 6651.676885 C = 7642.190281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.077 3.923 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.462 4.462 8 H 0.080 0.920 9 C 0.121 3.879 10 C -0.224 4.224 11 C -0.084 4.084 12 C -0.227 4.227 13 C 0.141 3.859 14 N -0.652 5.652 15 C 0.549 3.451 16 O -0.493 6.493 17 C -0.143 4.143 18 C -0.071 4.071 19 C 0.026 3.974 20 N -0.205 5.205 21 N -0.261 5.261 22 C 0.310 3.690 23 O -0.452 6.452 24 C -0.179 4.179 25 H 0.280 0.720 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.401 0.599 30 H 0.160 0.840 31 H 0.184 0.816 32 H 0.410 0.590 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.352 -2.464 -4.276 10.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.098 0.902 9 C 0.117 3.883 10 C -0.244 4.244 11 C -0.103 4.103 12 C -0.247 4.247 13 C 0.050 3.950 14 N -0.296 5.296 15 C 0.334 3.666 16 O -0.367 6.367 17 C -0.159 4.159 18 C -0.101 4.101 19 C -0.139 4.139 20 N -0.050 5.050 21 N -0.114 5.114 22 C 0.124 3.876 23 O -0.257 6.257 24 C -0.200 4.200 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.237 0.763 30 H 0.178 0.822 31 H 0.201 0.799 32 H 0.271 0.729 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.589 -3.427 -5.883 11.760 hybrid contribution 0.725 1.693 1.482 2.364 sum -8.864 -1.734 -4.401 10.047 Atomic orbital electron populations 1.69797 1.07570 1.29105 1.36101 1.25877 0.94760 1.01286 0.92055 0.86303 0.80565 0.80483 0.79344 1.19294 1.20312 1.18558 1.19573 0.97885 0.90954 1.40760 0.90209 1.17365 0.90499 0.92236 0.88152 1.21079 1.03779 0.92850 1.06693 1.20422 0.95469 0.96726 0.97701 1.20262 1.02142 0.95344 1.07001 1.17557 0.88269 0.95329 0.93848 1.43318 1.25884 1.23364 1.37042 1.17704 0.85266 0.83578 0.80093 1.90850 1.44572 1.36674 1.64578 1.21789 0.97519 0.97917 0.98716 1.22808 0.92406 0.97442 0.97396 1.24323 0.97765 0.98245 0.93519 1.72879 1.20223 0.98331 1.13587 1.73121 0.99203 1.19007 1.20068 1.20957 0.87797 0.89790 0.89069 1.84739 1.48043 1.29624 1.63343 1.21077 0.99893 0.95245 1.03819 0.90970 0.88682 0.88845 0.88139 0.76350 0.82214 0.79897 0.72927 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.15 10.94 55.55 0.61 -18.54 16 2 C 0.08 1.83 5.16 -17.35 -0.09 1.74 16 3 Si 0.91 17.83 29.59 -169.99 -5.03 12.80 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.73 9.06 -37.74 -0.34 -12.07 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 9 C 0.12 3.08 5.57 -106.85 -0.59 2.48 16 10 C -0.22 -5.35 9.79 -38.84 -0.38 -5.73 16 11 C -0.08 -1.89 10.02 -39.69 -0.40 -2.28 16 12 C -0.23 -5.11 8.66 -39.09 -0.34 -5.45 16 13 C 0.14 3.12 6.25 -83.79 -0.52 2.60 16 14 N -0.65 -11.39 5.28 -10.78 -0.06 -11.44 16 15 C 0.55 9.37 7.52 -12.35 -0.09 9.27 16 16 O -0.49 -10.00 13.06 -15.87 -0.21 -10.21 16 17 C -0.14 -1.93 5.93 -104.46 -0.62 -2.55 16 18 C -0.07 -0.69 9.69 -38.80 -0.38 -1.07 16 19 C 0.03 0.23 11.29 -17.44 -0.20 0.04 16 20 N -0.20 -2.55 11.47 30.52 0.35 -2.20 16 21 N -0.26 -3.69 11.52 30.73 0.35 -3.33 16 22 C 0.31 4.35 7.88 -16.42 -0.13 4.22 16 23 O -0.45 -6.27 11.80 -39.20 -0.46 -6.73 16 24 C -0.18 -4.34 8.60 -38.68 -0.33 -4.67 16 25 H 0.28 6.06 8.30 -40.82 -0.34 5.72 16 26 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 27 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 28 H 0.10 2.20 6.47 -52.49 -0.34 1.86 16 29 H 0.40 5.64 7.01 -40.82 -0.29 5.35 16 30 H 0.16 1.10 6.62 -52.48 -0.35 0.75 16 31 H 0.18 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.41 3.84 9.06 45.56 0.41 4.25 16 33 H 0.12 3.00 6.17 -52.49 -0.32 2.68 16 LS Contribution 296.08 15.07 4.46 4.46 Total: -1.00 -31.30 296.08 -6.10 -37.39 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -1.70 Total: 11.27 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -4.41 Total: -13.47 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 1.25 Total: -35.52 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.67 Total: -16.94 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.30 -6.10 -37.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192395828.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.513 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds