Wall clock time and date at job start Tue Mar 31 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47227 * 2 1 4 4 C 1.46508 * 119.99562 * 85.82024 * 3 2 1 5 5 C 1.50695 * 109.47060 * 83.05298 * 4 3 2 6 6 C 1.38170 * 120.02822 * 264.75666 * 5 4 3 7 7 C 1.38242 * 120.05483 * 180.02562 * 6 5 4 8 8 C 1.38296 * 120.11189 * 359.97301 * 7 6 5 9 9 C 1.38116 * 120.05444 * 0.02562 * 8 7 6 10 10 C 1.38711 * 120.02722 * 84.71108 * 5 4 3 11 11 O 1.35898 * 120.05485 * 0.03830 * 10 5 4 12 12 S 1.65597 * 120.00261 * 265.82409 * 3 2 1 13 13 O 1.42093 * 106.40331 * 31.02172 * 12 3 2 14 14 O 1.42105 * 106.40141 * 163.94524 * 12 3 2 15 15 C 1.76205 * 107.21573 * 277.48074 * 12 3 2 16 16 H 1.07998 * 119.99745 * 0.02562 * 15 12 3 17 17 C 1.37874 * 119.99625 * 180.02562 * 15 12 3 18 18 N 1.31514 * 120.00585 * 359.97438 * 17 15 12 19 19 Si 1.86809 * 119.99675 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47106 * 89.99826 * 19 17 15 21 21 H 1.48505 * 109.46741 * 209.99736 * 19 17 15 22 22 H 1.48500 * 109.47039 * 329.99740 * 19 17 15 23 23 H 1.08999 * 109.46647 * 184.81182 * 1 2 3 24 24 H 1.09000 * 109.47153 * 304.81641 * 1 2 3 25 25 H 1.09004 * 109.46728 * 64.81884 * 1 2 3 26 26 H 1.09002 * 109.47221 * 240.00713 * 2 1 3 27 27 H 1.08997 * 109.47447 * 120.00178 * 2 1 3 28 28 H 1.09003 * 109.46800 * 323.05532 * 4 3 2 29 29 H 1.08999 * 109.46609 * 203.05241 * 4 3 2 30 30 H 1.08001 * 119.97468 * 359.97411 * 6 5 4 31 31 H 1.07998 * 119.94807 * 179.97438 * 7 6 5 32 32 H 1.07993 * 119.97012 * 180.02562 * 8 7 6 33 33 H 1.08001 * 120.02509 * 179.72498 * 9 8 7 34 34 H 0.96697 * 114.00658 * 264.12331 * 11 10 5 35 35 H 0.96996 * 120.00605 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1754 2.1026 1.2655 5 6 3.4998 1.7428 1.8878 6 6 3.5685 0.7408 2.8367 7 6 4.7831 0.4106 3.4083 8 6 5.9323 1.0816 3.0319 9 6 5.8689 2.0840 2.0839 10 6 4.6512 2.4167 1.5079 11 8 4.5862 3.4025 0.5748 12 16 2.3929 2.1271 -1.4303 13 8 1.5260 1.5735 -2.4106 14 8 2.4623 3.5187 -1.1509 15 6 4.0242 1.6256 -1.8685 16 1 4.5709 0.9481 -1.2293 17 6 4.6028 2.0982 -3.0273 18 7 3.9369 2.9229 -3.8059 19 14 6.3320 1.5660 -3.4922 20 1 6.2652 0.3360 -4.3216 21 1 6.9922 2.6488 -4.2649 22 1 7.1132 1.2902 -2.2598 23 1 -0.3632 -1.0241 0.0862 24 1 -0.3633 0.5867 0.8437 25 1 -0.3633 0.4373 -0.9301 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.3681 1.8262 1.9438 29 1 2.1414 3.1759 1.0784 30 1 2.6724 0.2156 3.1326 31 1 4.8347 -0.3726 4.1501 32 1 6.8800 0.8216 3.4797 33 1 6.7660 2.6107 1.7935 34 1 4.7936 3.1088 -0.3229 35 1 4.3440 3.2556 -4.6210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192962941.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:03 Heat of formation + Delta-G solvation = -111.715017 kcal Electronic energy + Delta-G solvation = -21809.643990 eV Core-core repulsion = 18513.188995 eV Total energy + Delta-G solvation = -3296.454995 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.46375 -36.11028 -35.92000 -35.24587 -33.96391 -33.19021 -31.71085 -29.72133 -28.85000 -26.30520 -25.26955 -22.35745 -22.06948 -20.87827 -18.76063 -17.73148 -17.12137 -16.38269 -15.73159 -15.61447 -15.25046 -14.91432 -14.55624 -14.08023 -13.63491 -13.42861 -13.19608 -13.16324 -12.35808 -12.08439 -11.99080 -11.87689 -11.60949 -11.49656 -11.30583 -11.27818 -11.03771 -10.74123 -10.67271 -10.27782 -10.10592 -10.01696 -9.87933 -9.36480 -8.98002 -8.58758 -8.30986 -8.10586 -6.81036 -5.47946 1.56331 1.64562 2.28643 2.98864 3.07476 3.12410 3.91083 4.00119 4.50607 4.58296 4.91534 5.13432 5.14680 5.29518 5.49080 5.49794 5.66856 5.71284 5.78977 5.86474 5.95473 6.09929 6.13653 6.25100 6.29073 6.35845 6.44840 6.65690 6.69917 6.72691 6.79543 6.95214 7.19139 7.20189 7.60253 7.84576 8.47773 8.75282 10.11089 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.009866 C = 0.007014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.153366 B = 2837.219060 C = 3991.038568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.126 3.874 3 N -1.006 6.006 4 C 0.163 3.837 5 C -0.130 4.130 6 C -0.092 4.092 7 C -0.146 4.146 8 C -0.106 4.106 9 C -0.160 4.160 10 C 0.141 3.859 11 O -0.495 6.495 12 S 2.709 3.291 13 O -1.004 7.004 14 O -0.989 6.989 15 C -1.035 5.035 16 H 0.103 0.897 17 C 0.136 3.864 18 N -0.834 5.834 19 Si 0.913 3.087 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.261 1.261 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.408 0.592 35 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 -5.636 11.050 12.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.000 4.000 3 N -0.840 5.840 4 C 0.037 3.963 5 C -0.132 4.132 6 C -0.111 4.111 7 C -0.164 4.164 8 C -0.124 4.124 9 C -0.179 4.179 10 C 0.095 3.905 11 O -0.313 6.313 12 S 2.809 3.191 13 O -0.995 6.995 14 O -0.979 6.979 15 C -1.167 5.167 16 H 0.121 0.879 17 C -0.084 4.084 18 N -0.463 5.463 19 Si 0.736 3.264 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.185 1.185 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.124 0.876 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.274 0.726 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.467 -4.585 10.850 11.788 hybrid contribution 1.724 -1.036 -0.610 2.102 sum 2.191 -5.620 10.239 11.884 Atomic orbital electron populations 1.22249 0.96911 1.01281 1.02753 1.21000 0.93698 0.82954 1.02322 1.58081 1.81261 1.22755 1.21865 1.19997 0.92161 0.98585 0.85587 1.20736 0.96886 0.96645 0.98955 1.20895 0.97732 0.96315 0.96152 1.20998 0.92828 1.01077 1.01486 1.20933 0.98196 0.96005 0.97308 1.21511 0.97658 0.99117 0.99575 1.18520 0.91610 0.88268 0.92130 1.84755 1.92357 1.33021 1.21181 1.00775 0.75777 0.72668 0.69857 1.93355 1.68670 1.79902 1.57541 1.93402 1.88908 1.31853 1.83786 1.30772 1.25566 1.42931 1.17436 0.87898 1.24738 0.99669 0.90717 0.93227 1.69887 1.38467 1.25467 1.12492 0.86266 0.81256 0.79295 0.79542 1.19070 1.19798 1.18503 0.92397 0.92896 0.91474 0.90358 0.91745 0.90802 0.87551 0.86123 0.86455 0.86357 0.85781 0.72629 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.13 2.15 6.05 -4.04 -0.02 2.13 16 3 N -1.01 -20.18 2.77 -115.66 -0.32 -20.50 16 4 C 0.16 2.91 5.51 -5.19 -0.03 2.88 16 5 C -0.13 -2.25 5.46 -104.47 -0.57 -2.82 16 6 C -0.09 -1.31 9.49 -39.61 -0.38 -1.68 16 7 C -0.15 -1.90 10.04 -39.56 -0.40 -2.30 16 8 C -0.11 -1.45 10.04 -39.60 -0.40 -1.85 16 9 C -0.16 -2.61 9.99 -39.43 -0.39 -3.00 16 10 C 0.14 2.67 6.68 -39.22 -0.26 2.41 16 11 O -0.50 -10.79 11.27 -34.73 -0.39 -11.18 16 12 S 2.71 69.72 4.57 -107.50 -0.49 69.23 16 13 O -1.00 -28.76 17.01 -57.17 -0.97 -29.73 16 14 O -0.99 -27.52 14.81 -64.08 -0.95 -28.47 16 15 C -1.03 -26.65 7.28 30.60 0.22 -26.42 16 16 H 0.10 2.47 7.81 -52.49 -0.41 2.06 16 17 C 0.14 3.57 5.46 -17.82 -0.10 3.47 16 18 N -0.83 -23.36 13.19 55.43 0.73 -22.63 16 19 Si 0.91 19.53 29.54 -169.99 -5.02 14.51 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 25 H 0.07 1.18 7.87 -51.93 -0.41 0.78 16 26 H 0.08 1.42 7.84 -51.93 -0.41 1.01 16 27 H 0.06 0.91 7.92 -51.93 -0.41 0.50 16 28 H 0.07 1.07 8.02 -51.93 -0.42 0.65 16 29 H 0.11 2.12 6.38 -51.93 -0.33 1.78 16 30 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 34 H 0.41 9.35 5.66 45.56 0.26 9.61 16 35 H 0.29 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 309.03 15.07 4.66 4.66 Total: -1.00 -32.38 309.03 -8.50 -40.88 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -3.80 Total: 12.67 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: -1.94 Total: -29.43 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.41 Total: -43.13 kcal Atomic # 8 Polarization: -67.08 SS G_CDS: -2.31 Total: -69.39 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Atomic # 16 Polarization: 69.72 SS G_CDS: -0.49 Total: 69.23 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.38 -8.50 -40.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192962941.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.834 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds