Wall clock time and date at job start Tue Mar 31 2020 05:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47440 * 2 1 4 4 O 1.42899 * 109.46977 * 119.99969 * 2 1 3 5 5 C 1.35896 * 117.00122 * 84.82789 * 4 2 1 6 6 C 1.38819 * 120.01558 * 174.71523 * 5 4 2 7 7 C 1.38176 * 120.08702 * 179.72063 * 6 5 4 8 8 C 1.38153 * 120.13110 * 0.55415 * 7 6 5 9 9 C 1.38931 * 120.03382 * 359.72508 * 8 7 6 10 10 N 1.39675 * 120.04709 * 180.02562 * 9 8 7 11 11 S 1.65594 * 120.00226 * 254.61320 * 10 9 8 12 12 O 1.42097 * 106.40250 * 177.75738 * 11 10 9 13 13 O 1.42097 * 106.39994 * 310.67550 * 11 10 9 14 14 C 1.76197 * 107.22039 * 64.21460 * 11 10 9 15 15 H 1.08006 * 119.99932 * 359.79863 * 14 11 10 16 16 C 1.37871 * 120.00230 * 179.80061 * 14 11 10 17 17 N 1.31516 * 120.00186 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 120.00449 * 180.02562 * 16 14 11 19 19 H 1.48508 * 109.46819 * 59.99557 * 18 16 14 20 20 H 1.48492 * 109.47596 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47008 * 300.00302 * 18 16 14 22 22 C 1.38572 * 120.01975 * 354.99244 * 5 4 2 23 23 H 1.09007 * 109.46947 * 60.00501 * 1 2 3 24 24 H 1.09001 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47449 * 300.00428 * 1 2 3 26 26 H 1.09001 * 109.47206 * 239.99814 * 2 1 3 27 27 H 1.09001 * 109.47433 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47250 * 300.00110 * 3 2 1 29 29 H 1.09001 * 109.47073 * 59.99732 * 3 2 1 30 30 H 1.07993 * 119.95467 * 0.02562 * 6 5 4 31 31 H 1.08003 * 119.93546 * 180.27853 * 7 6 5 32 32 H 1.08001 * 119.98476 * 179.74199 * 8 7 6 33 33 H 0.97004 * 119.99547 * 74.61251 * 10 9 8 34 34 H 0.96996 * 120.00266 * 180.02562 * 17 16 14 35 35 H 1.08005 * 120.05972 * 359.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1090 -2.0270 1.0991 6 6 2.6671 -2.7347 2.1549 7 6 2.7670 -4.1113 2.0901 8 6 2.3225 -4.7870 0.9701 9 6 1.7684 -4.0834 -0.0921 10 7 1.3184 -4.7663 -1.2244 11 16 2.1999 -4.7178 -2.6254 12 8 1.5151 -5.5414 -3.5591 13 8 2.4951 -3.3489 -2.8665 14 6 3.7403 -5.5090 -2.3000 15 1 3.9458 -5.9075 -1.3174 16 6 4.6833 -5.6195 -3.2997 17 7 4.4329 -5.1347 -4.4964 18 14 6.3161 -6.4590 -2.9551 19 1 6.0722 -7.8624 -2.5352 20 1 7.1477 -6.4482 -4.1852 21 1 7.0261 -5.7342 -1.8707 22 6 1.6620 -2.7008 -0.0262 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.0191 -2.2091 3.0302 31 1 3.1975 -4.6599 2.9149 32 1 2.4055 -5.8626 0.9202 33 1 0.4894 -5.2689 -1.1901 34 1 5.0962 -5.2128 -5.1998 35 1 1.2312 -2.1514 -0.8503 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972152.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:53 Heat of formation + Delta-G solvation = -110.736718 kcal Electronic energy + Delta-G solvation = -20852.149241 eV Core-core repulsion = 17555.736668 eV Total energy + Delta-G solvation = -3296.412573 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.04851 -37.75712 -35.28376 -34.31988 -34.03408 -33.11254 -32.76086 -29.78514 -28.34500 -27.23023 -26.15050 -23.10767 -21.91778 -20.60776 -19.13257 -18.32073 -17.46312 -16.31665 -15.98136 -15.83797 -15.39777 -15.19423 -14.86153 -14.17003 -13.96115 -13.61384 -13.44633 -13.14750 -12.62593 -12.37887 -12.19480 -12.04696 -11.79218 -11.56472 -11.31283 -11.21160 -11.19580 -10.79538 -10.66556 -10.63290 -10.38704 -10.32980 -10.23885 -9.41992 -9.25180 -8.82552 -8.38812 -7.82764 -6.72601 -5.34193 1.53447 1.75181 2.28754 3.08552 3.12404 3.18417 3.37915 4.04225 4.05400 4.59288 4.64268 4.86168 4.96650 5.17935 5.24396 5.33729 5.51346 5.54193 5.62569 5.67813 5.72063 5.75086 5.85771 5.87913 6.04227 6.09485 6.17946 6.47866 6.56502 6.67152 6.71125 6.93066 7.06500 7.30991 7.65481 7.87324 7.95068 8.86842 10.22028 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.005915 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.395112 B = 4732.467851 C = 5022.219437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.068 3.932 3 C -0.145 4.145 4 O -0.313 6.313 5 C 0.134 3.866 6 C -0.160 4.160 7 C -0.078 4.078 8 C -0.156 4.156 9 C 0.200 3.800 10 N -1.088 6.088 11 S 2.707 3.293 12 O -1.001 7.001 13 O -0.998 6.998 14 C -1.014 5.014 15 H 0.104 0.896 16 C 0.134 3.866 17 N -0.847 5.847 18 Si 0.921 3.079 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.263 1.263 22 C -0.200 4.200 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.411 0.589 34 H 0.292 0.708 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.389 6.356 11.502 13.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.012 3.988 3 C -0.202 4.202 4 O -0.227 6.227 5 C 0.089 3.911 6 C -0.179 4.179 7 C -0.097 4.097 8 C -0.178 4.178 9 C 0.105 3.895 10 N -0.838 5.838 11 S 2.809 3.191 12 O -0.991 6.991 13 O -0.988 6.988 14 C -1.148 5.148 15 H 0.122 0.878 16 C -0.084 4.084 17 N -0.476 5.476 18 Si 0.745 3.255 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.187 1.187 22 C -0.221 4.221 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.246 0.754 34 H 0.102 0.898 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.488 7.022 10.588 13.474 hybrid contribution 0.851 -1.080 0.216 1.392 sum -3.637 5.942 10.804 12.856 Atomic orbital electron populations 1.22372 0.95303 1.03190 1.02739 1.22519 0.94247 0.93774 0.88251 1.21822 1.02232 0.93561 1.02618 1.86055 1.81376 1.16377 1.38873 1.18783 0.95685 0.82484 0.94180 1.20362 1.05040 0.93783 0.98761 1.20761 0.98232 0.93104 0.97632 1.21390 1.01589 1.00699 0.94086 1.16978 0.95369 0.89744 0.87412 1.53890 1.37435 1.64751 1.27736 1.00779 0.74669 0.74043 0.69655 1.93387 1.76572 1.70203 1.58956 1.93357 1.85592 1.37010 1.82816 1.30414 1.22716 1.55394 1.06289 0.87783 1.24734 0.99663 0.91080 0.92945 1.69881 1.36936 1.38321 1.02494 0.86189 0.80327 0.80263 0.78755 1.18776 1.20088 1.18749 1.21675 1.06608 0.95031 0.98800 0.91029 0.91723 0.91752 0.89640 0.91593 0.90593 0.91839 0.85529 0.85325 0.85329 0.75385 0.89794 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 9.17 37.16 0.34 -1.77 16 2 C 0.07 0.94 2.85 -26.73 -0.08 0.87 16 3 C -0.15 -1.59 9.56 37.16 0.36 -1.24 16 4 O -0.31 -4.86 9.80 -19.41 -0.19 -5.05 16 5 C 0.13 2.25 6.60 -39.24 -0.26 2.00 16 6 C -0.16 -2.38 9.98 -39.39 -0.39 -2.77 16 7 C -0.08 -1.12 10.03 -39.64 -0.40 -1.52 16 8 C -0.16 -2.60 9.97 -39.36 -0.39 -3.00 16 9 C 0.20 3.83 5.80 -83.81 -0.49 3.34 16 10 N -1.09 -22.06 5.70 32.40 0.18 -21.88 16 11 S 2.71 71.67 4.99 -107.50 -0.54 71.14 16 12 O -1.00 -29.08 18.02 -57.17 -1.03 -30.11 16 13 O -1.00 -28.64 17.01 -57.17 -0.97 -29.61 16 14 C -1.01 -27.97 9.66 30.60 0.30 -27.67 16 15 H 0.10 2.63 7.81 -52.48 -0.41 2.22 16 16 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 17 N -0.85 -24.86 13.19 55.43 0.73 -24.13 16 18 Si 0.92 20.67 29.54 -169.99 -5.02 15.64 16 19 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 22 C -0.20 -3.72 7.46 -39.24 -0.29 -4.01 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.82 6.93 -51.93 -0.36 0.46 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 1.37 6.29 -51.93 -0.33 1.04 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 33 H 0.41 6.97 8.95 -34.47 -0.31 6.66 16 34 H 0.29 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.14 2.62 5.28 -52.48 -0.28 2.34 16 LS Contribution 314.57 15.07 4.74 4.74 Total: -1.00 -34.70 314.57 -7.70 -42.40 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.20 Total: 9.00 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: -1.40 Total: -32.14 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.92 Total: -46.01 kcal Atomic # 8 Polarization: -62.58 SS G_CDS: -2.19 Total: -64.77 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 71.67 SS G_CDS: -0.54 Total: 71.14 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.70 -7.70 -42.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972152.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.338 kcal (2) G-P(sol) polarization free energy of solvation -34.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds