Wall clock time and date at job start Tue Mar 31 2020 05:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47036 * 2 1 4 4 C 1.36016 * 117.00263 * 180.02562 * 3 2 1 5 5 C 1.38503 * 120.07792 * 0.02562 * 4 3 2 6 6 C 1.38282 * 120.01793 * 180.30082 * 5 4 3 7 7 C 1.38260 * 120.17847 * 359.44424 * 6 5 4 8 8 C 1.50698 * 119.91978 * 180.28166 * 7 6 5 9 9 C 1.38225 * 120.15963 * 0.55613 * 7 6 5 10 10 C 1.38725 * 119.97656 * 359.72529 * 9 7 6 11 11 N 1.39971 * 120.08833 * 179.97438 * 10 9 7 12 12 S 1.65606 * 119.99657 * 326.97914 * 11 10 9 13 13 O 1.42101 * 106.40162 * 181.21993 * 12 11 10 14 14 O 1.42104 * 106.39971 * 314.13816 * 12 11 10 15 15 C 1.76194 * 107.22009 * 67.67584 * 12 11 10 16 16 H 1.07999 * 120.00169 * 0.02562 * 15 12 11 17 17 C 1.37873 * 120.00082 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99960 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00137 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47076 * 60.00065 * 19 17 15 21 21 H 1.48498 * 109.47439 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47075 * 300.00295 * 19 17 15 23 23 H 1.08998 * 109.47346 * 59.99687 * 1 2 3 24 24 H 1.09001 * 109.46895 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46904 * 299.99747 * 1 2 3 26 26 H 1.08997 * 109.47580 * 240.00540 * 2 1 3 27 27 H 1.08994 * 109.47631 * 119.99897 * 2 1 3 28 28 H 1.08004 * 119.99441 * 0.02562 * 5 4 3 29 29 H 1.08000 * 119.91126 * 179.72753 * 6 5 4 30 30 H 1.08999 * 109.47069 * 270.26952 * 8 7 6 31 31 H 1.08997 * 109.47267 * 30.27445 * 8 7 6 32 32 H 1.08997 * 109.47094 * 150.27700 * 8 7 6 33 33 H 1.07999 * 120.00818 * 179.74522 * 9 7 6 34 34 H 0.96992 * 120.00546 * 146.97880 * 11 10 9 35 35 H 0.97004 * 119.99714 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3547 1.5256 -0.0005 5 6 4.2000 0.4284 -0.0016 6 6 5.5707 0.6111 0.0041 7 6 6.1017 1.8876 -0.0007 8 6 7.5964 2.0799 -0.0008 9 6 5.2650 2.9879 0.0004 10 6 3.8889 2.8122 0.0005 11 7 3.0395 3.9247 0.0021 12 16 3.4930 5.3116 0.7853 13 8 2.4199 6.2298 0.6291 14 8 3.9947 4.9107 2.0530 15 6 4.8589 5.9873 -0.0992 16 1 5.2338 5.4857 -0.9791 17 6 5.4484 7.1568 0.3314 18 7 4.9916 7.7679 1.4026 19 14 6.8960 7.8736 -0.6067 20 1 6.4829 8.1725 -2.0015 21 1 7.3449 9.1245 0.0558 22 1 8.0115 6.8934 -0.6201 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.7885 -0.5702 -0.0024 29 1 6.2282 -0.2457 0.0078 30 1 7.9569 2.1255 1.0268 31 1 8.0702 1.2441 -0.5154 32 1 7.8431 3.0094 -0.5138 33 1 5.6825 3.9839 0.0008 34 1 2.1853 3.8834 -0.4555 35 1 5.4066 8.5906 1.7058 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:57 Heat of formation + Delta-G solvation = -140.047916 kcal Electronic energy + Delta-G solvation = -20892.420852 eV Core-core repulsion = 17594.737250 eV Total energy + Delta-G solvation = -3297.683602 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25348 -38.79849 -37.51671 -36.29001 -36.13940 -35.23001 -33.04164 -31.93269 -30.14178 -28.40827 -27.12619 -24.89350 -22.98824 -22.17718 -20.90319 -19.68537 -19.21854 -18.30648 -17.91625 -17.08944 -16.98514 -16.49242 -16.01793 -15.78164 -15.35052 -14.95146 -14.73213 -14.42887 -14.03956 -13.90450 -13.55326 -13.35756 -13.09240 -13.04627 -12.93565 -12.64066 -12.62874 -12.60858 -12.53251 -12.34887 -12.26908 -11.87313 -11.57423 -11.41693 -11.22872 -10.93044 -9.51383 -8.82475 -8.65487 -7.53469 0.11133 0.42632 0.51050 1.35203 1.37635 1.51106 2.18987 2.27475 2.55060 2.77830 2.79582 3.60222 3.88529 4.00344 4.05347 4.10578 4.21292 4.35525 4.39374 4.43385 4.54260 4.71874 4.75536 4.92272 4.94978 4.96526 5.13178 5.18533 5.25049 5.30569 5.32117 5.42173 5.72683 5.83250 5.93517 6.17899 6.58056 6.71862 8.18099 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.006593 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.799891 B = 4246.100639 C = 5382.485072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.043 3.957 3 O -0.339 6.339 4 C 0.078 3.922 5 C -0.176 4.176 6 C -0.102 4.102 7 C -0.099 4.099 8 C -0.110 4.110 9 C -0.167 4.167 10 C 0.127 3.873 11 N -1.056 6.056 12 S 2.708 3.292 13 O -1.038 7.038 14 O -1.029 7.029 15 C -1.030 5.030 16 H 0.128 0.872 17 C 0.074 3.926 18 N -0.891 5.891 19 Si 0.993 3.007 20 H -0.252 1.252 21 H -0.264 1.264 22 H -0.242 1.242 23 H 0.061 0.939 24 H 0.107 0.893 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.165 0.835 29 H 0.166 0.834 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.140 0.860 34 H 0.421 0.579 35 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 -17.432 -6.244 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.254 6.254 4 C 0.029 3.971 5 C -0.195 4.195 6 C -0.120 4.120 7 C -0.100 4.100 8 C -0.167 4.167 9 C -0.188 4.188 10 C 0.030 3.970 11 N -0.802 5.802 12 S 2.811 3.189 13 O -1.029 7.029 14 O -1.019 7.019 15 C -1.164 5.164 16 H 0.145 0.855 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.810 3.190 20 H -0.175 1.175 21 H -0.188 1.188 22 H -0.166 1.166 23 H 0.080 0.920 24 H 0.125 0.875 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.183 0.817 29 H 0.183 0.817 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.158 0.842 34 H 0.256 0.744 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.158 -16.761 -5.201 17.587 hybrid contribution 0.093 0.805 -0.653 1.040 sum 1.250 -15.956 -5.853 17.042 Atomic orbital electron populations 1.21824 0.91862 1.04267 1.02820 1.23117 0.96684 0.80667 1.02636 1.86040 1.18332 1.31697 1.89299 1.18874 0.83551 0.92543 1.02102 1.21412 0.94080 0.97844 1.06165 1.21178 0.94524 0.96814 0.99511 1.19983 0.97147 0.92294 1.00551 1.20814 0.89380 1.03492 1.02988 1.21701 0.91119 1.02480 1.03519 1.17131 0.89839 0.85030 1.04978 1.53352 1.29014 1.27733 1.70119 1.00446 0.74791 0.70249 0.73444 1.93319 1.59446 1.62466 1.87654 1.93332 1.82078 1.82738 1.43776 1.30747 1.36644 1.20829 1.28207 0.85457 1.26048 0.99942 0.94114 0.93906 1.69987 1.41198 1.18481 1.22508 0.85128 0.76649 0.78382 0.78861 1.17549 1.18769 1.16558 0.92004 0.87493 0.92721 0.90181 0.91004 0.81723 0.81683 0.90870 0.88440 0.92159 0.84233 0.74420 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 10.28 71.98 0.74 -1.82 16 2 C 0.04 0.88 5.46 71.98 0.39 1.28 16 3 O -0.34 -10.85 9.67 -93.73 -0.91 -11.75 16 4 C 0.08 2.70 6.70 22.59 0.15 2.86 16 5 C -0.18 -4.62 9.04 22.34 0.20 -4.42 16 6 C -0.10 -2.55 9.69 22.29 0.22 -2.34 16 7 C -0.10 -3.13 5.88 -19.86 -0.12 -3.25 16 8 C -0.11 -2.75 10.01 71.24 0.71 -2.04 16 9 C -0.17 -6.89 8.59 22.38 0.19 -6.70 16 10 C 0.13 5.38 6.21 38.22 0.24 5.62 16 11 N -1.06 -48.87 5.67 -51.05 -0.29 -49.16 16 12 S 2.71 154.83 4.63 -56.49 -0.26 154.57 16 13 O -1.04 -65.24 18.02 -128.00 -2.31 -67.54 16 14 O -1.03 -64.79 17.44 -128.00 -2.23 -67.02 16 15 C -1.03 -57.06 7.59 67.73 0.51 -56.55 16 16 H 0.13 6.35 6.89 -2.91 -0.02 6.33 16 17 C 0.07 4.07 5.46 84.65 0.46 4.53 16 18 N -0.89 -53.20 13.19 21.45 0.28 -52.92 16 19 Si 0.99 40.58 29.54 68.60 2.03 42.61 16 20 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 21 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 22 H -0.24 -9.08 7.11 99.48 0.71 -8.37 16 23 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.28 7.66 -2.39 -0.02 1.26 16 27 H 0.07 1.28 7.67 -2.39 -0.02 1.26 16 28 H 0.17 2.92 6.30 -2.91 -0.02 2.90 16 29 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.10 1.70 8.09 -2.39 -0.02 1.69 16 32 H 0.06 1.60 8.08 -2.39 -0.02 1.58 16 33 H 0.14 6.40 4.48 -2.91 -0.01 6.38 16 34 H 0.42 17.50 8.65 -96.75 -0.84 16.66 16 35 H 0.30 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -80.20 311.14 0.30 -79.90 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: 0.29 Total: 34.15 kcal Atomic # 6 Polarization: -66.53 SS G_CDS: 3.70 Total: -62.83 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -0.01 Total: -102.08 kcal Atomic # 8 Polarization: -140.87 SS G_CDS: -5.45 Total: -146.32 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: 154.83 SS G_CDS: -0.26 Total: 154.57 kcal Total: -80.20 0.30 -79.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.149 kcal (2) G-P(sol) polarization free energy of solvation -80.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds