Wall clock time and date at job start Tue Mar 31 2020 05:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 120.00268 * 2 1 4 4 H 1.48501 * 109.47207 * 275.30059 * 3 2 1 5 5 H 1.48506 * 109.47149 * 35.30267 * 3 2 1 6 6 H 1.48504 * 109.47044 * 155.29858 * 3 2 1 7 7 C 1.39936 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00260 * 346.81887 * 7 2 1 9 9 C 1.41408 * 119.99591 * 166.82024 * 7 2 1 10 10 C 1.40779 * 120.21026 * 331.35261 * 9 7 2 11 11 C 1.37653 * 119.89419 * 180.02562 * 10 9 7 12 12 C 1.38519 * 120.32665 * 359.74168 * 11 10 9 13 13 C 1.39282 * 120.42289 * 0.51835 * 12 11 10 14 14 N 1.39797 * 119.95339 * 179.75724 * 13 12 11 15 15 C 1.34778 * 120.00136 * 326.45925 * 14 13 12 16 16 O 1.21563 * 119.99799 * 355.09596 * 15 14 13 17 17 C 1.47753 * 120.00100 * 175.09544 * 15 14 13 18 18 C 1.37329 * 119.81185 * 359.97438 * 17 15 14 19 19 N 1.33034 * 121.38811 * 180.02562 * 18 17 15 20 20 C 1.30942 * 121.00030 * 359.97438 * 19 18 17 21 21 C 1.46478 * 119.56390 * 0.02562 * 20 19 18 22 22 O 1.21876 * 120.65445 * 179.97438 * 21 20 19 23 23 N 1.35152 * 118.69183 * 0.27391 * 21 20 19 24 24 H 0.97003 * 120.51051 * 179.70278 * 23 21 20 25 25 C 1.38322 * 120.09885 * 359.48731 * 13 12 11 26 26 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.05728 * 0.02562 * 10 9 7 28 28 H 1.08005 * 119.83626 * 180.02562 * 11 10 9 29 29 H 1.07998 * 119.78613 * 180.28017 * 12 11 10 30 30 H 0.96998 * 120.00243 * 146.45231 * 14 13 12 31 31 H 1.07996 * 119.30144 * 359.97438 * 18 17 15 32 32 H 1.07999 * 120.21817 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.16707 * 180.23338 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3779 2.1110 -1.3941 5 1 1.5004 2.6177 0.8091 6 1 3.5914 1.4103 0.5851 7 6 2.0079 -1.2119 0.0005 8 1 1.4893 -2.1348 0.2142 9 6 3.3940 -1.2282 -0.2787 10 6 3.9611 -0.2425 -1.1086 11 6 5.3111 -0.2648 -1.3765 12 6 6.1166 -1.2498 -0.8291 13 6 5.5689 -2.2347 -0.0106 14 7 6.3901 -3.2271 0.5326 15 6 7.4508 -3.6802 -0.1646 16 8 7.6425 -3.2917 -1.3004 17 6 8.3806 -4.6492 0.4516 18 6 8.1606 -5.0851 1.7352 19 7 8.9778 -5.9565 2.3207 20 6 10.0230 -6.4297 1.6898 21 6 10.2983 -5.9937 0.3188 22 8 11.2658 -6.4211 -0.2868 23 7 9.4618 -5.1034 -0.2593 24 1 9.6215 -4.7934 -1.1645 25 6 4.2145 -2.2291 0.2702 26 1 -0.4849 0.8401 0.0004 27 1 3.3379 0.5300 -1.5344 28 1 5.7452 0.4921 -2.0130 29 1 7.1755 -1.2564 -1.0415 30 1 6.1966 -3.5896 1.4112 31 1 7.3066 -4.7120 2.2810 32 1 10.6778 -7.1370 2.1771 33 1 3.7892 -2.9900 0.9078 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196164436.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:42 Heat of formation + Delta-G solvation = -1.027424 kcal Electronic energy + Delta-G solvation = -20812.017982 eV Core-core repulsion = 17417.211561 eV Total energy + Delta-G solvation = -3394.806421 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.89376 -40.07538 -37.99977 -37.61986 -35.38132 -34.80688 -33.47293 -31.15383 -30.42486 -28.78826 -26.19591 -25.28440 -24.53011 -22.49818 -21.40096 -20.35167 -19.51346 -18.67673 -17.97983 -17.73007 -16.36692 -16.21877 -16.12205 -15.55125 -15.37375 -15.14318 -14.57309 -14.34547 -13.80857 -13.67726 -13.11809 -12.82253 -12.80206 -12.25110 -11.92451 -11.87354 -11.78799 -11.22445 -10.97736 -10.78054 -10.64878 -10.20771 -9.81178 -9.71807 -9.56276 -9.17550 -8.69673 -7.85645 -7.39259 -7.04012 -4.63919 -0.27569 1.17417 1.98929 2.13736 2.48034 2.72343 2.89648 3.04056 3.15312 3.22436 3.25315 3.65555 3.74631 3.88621 4.32952 4.38511 4.52517 4.80879 5.26415 5.50669 5.82976 5.85162 6.02100 6.10589 6.14457 6.28445 6.51222 6.55114 6.92476 7.05725 7.10504 7.25029 7.33097 7.46667 7.53440 7.68766 7.82451 8.03859 8.22170 8.46910 8.66718 9.98096 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.039823 B = 0.003438 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.942049 B = 8142.517654 C = 8543.215447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.240 1.240 7 C -0.443 4.443 8 H 0.092 0.908 9 C 0.105 3.895 10 C -0.237 4.237 11 C -0.066 4.066 12 C -0.231 4.231 13 C 0.159 3.841 14 N -0.641 5.641 15 C 0.547 3.453 16 O -0.502 6.502 17 C 0.092 3.908 18 C -0.004 4.004 19 N -0.401 5.401 20 C 0.076 3.924 21 C 0.477 3.523 22 O -0.522 6.522 23 N -0.573 5.573 24 H 0.428 0.572 25 C -0.225 4.225 26 H 0.287 0.713 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.407 0.593 31 H 0.179 0.821 32 H 0.197 0.803 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.664 -6.452 4.781 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.137 4.137 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.163 1.163 7 C -0.471 4.471 8 H 0.110 0.890 9 C 0.101 3.899 10 C -0.256 4.256 11 C -0.085 4.085 12 C -0.252 4.252 13 C 0.067 3.933 14 N -0.286 5.286 15 C 0.331 3.669 16 O -0.377 6.377 17 C -0.023 4.023 18 C -0.145 4.145 19 N -0.112 5.112 20 C -0.116 4.116 21 C 0.270 3.730 22 O -0.397 6.397 23 N -0.211 5.211 24 H 0.270 0.730 25 C -0.246 4.246 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.244 0.756 31 H 0.196 0.804 32 H 0.214 0.786 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.795 -6.525 4.511 15.055 hybrid contribution 0.200 0.978 -0.851 1.312 sum 12.996 -5.547 3.660 14.596 Atomic orbital electron populations 1.69654 1.08049 1.30404 1.35119 1.26187 0.94850 1.01815 0.90876 0.86280 0.81242 0.79490 0.78786 1.19764 1.22055 1.16320 1.19487 0.91316 0.95739 1.40599 0.89021 1.17477 0.93097 0.90342 0.88991 1.21055 0.95041 1.03719 1.05776 1.20473 0.93549 0.96749 0.97727 1.20299 0.99001 0.98239 1.07646 1.17437 0.89299 0.88191 0.98350 1.43223 1.26314 1.38536 1.20535 1.17713 0.81797 0.81463 0.85946 1.90890 1.72802 1.57250 1.16780 1.21547 0.90008 0.97065 0.93639 1.22368 1.02028 0.99333 0.90816 1.67742 1.01897 1.05784 1.35745 1.26308 0.95758 0.99979 0.89519 1.20016 0.83347 0.79919 0.89702 1.91006 1.27544 1.55821 1.65348 1.43823 1.21310 1.37246 1.18744 0.73000 1.20691 0.90008 1.05129 1.08800 0.90284 0.88182 0.88224 0.87456 0.75576 0.80440 0.78606 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.71 13.93 55.55 0.77 -19.94 16 2 C 0.08 2.04 5.47 -17.34 -0.09 1.95 16 3 Si 0.91 19.82 24.37 -169.99 -4.14 15.68 16 4 H -0.27 -5.75 6.77 56.52 0.38 -5.36 16 5 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.24 -5.25 6.48 56.52 0.37 -4.88 16 7 C -0.44 -11.28 9.61 -37.74 -0.36 -11.64 16 8 H 0.09 2.44 8.06 -52.49 -0.42 2.01 16 9 C 0.10 2.47 5.19 -106.85 -0.55 1.92 16 10 C -0.24 -5.41 6.91 -38.84 -0.27 -5.68 16 11 C -0.07 -1.38 10.02 -39.69 -0.40 -1.78 16 12 C -0.23 -4.66 8.66 -39.09 -0.34 -5.00 16 13 C 0.16 3.00 6.26 -83.81 -0.52 2.47 16 14 N -0.64 -8.95 5.27 -10.80 -0.06 -9.01 16 15 C 0.55 7.56 7.53 -12.37 -0.09 7.47 16 16 O -0.50 -8.68 14.15 5.31 0.08 -8.60 16 17 C 0.09 0.99 6.78 -81.94 -0.56 0.43 16 18 C 0.00 -0.03 10.60 -17.36 -0.18 -0.22 16 19 N -0.40 -3.69 10.42 -11.18 -0.12 -3.81 16 20 C 0.08 0.65 11.49 -14.61 -0.17 0.49 16 21 C 0.48 5.29 7.94 -12.77 -0.10 5.19 16 22 O -0.52 -7.33 17.99 5.03 0.09 -7.24 16 23 N -0.57 -6.21 5.37 -9.65 -0.05 -6.26 16 24 H 0.43 4.60 8.32 -40.82 -0.34 4.26 16 25 C -0.22 -4.67 9.70 -38.67 -0.38 -5.04 16 26 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 27 H 0.10 2.29 4.20 -52.49 -0.22 2.07 16 28 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 29 H 0.11 2.10 6.40 -52.49 -0.34 1.76 16 30 H 0.41 4.11 6.79 -40.82 -0.28 3.83 16 31 H 0.18 1.14 6.27 -52.49 -0.33 0.81 16 32 H 0.20 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.11 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 290.52 15.07 4.38 4.38 Total: -1.00 -30.12 290.52 -5.45 -35.57 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -2.38 Total: 8.69 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -4.02 Total: -9.46 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.55 Total: -39.02 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.17 Total: -15.85 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.14 Total: 15.68 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.12 -5.45 -35.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196164436.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.546 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds