Wall clock time and date at job start Tue Mar 31 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29486 * 1 3 3 Si 1.86791 * 120.00281 * 2 1 4 4 H 1.48503 * 109.47194 * 82.60057 * 3 2 1 5 5 H 1.48498 * 109.47525 * 202.60228 * 3 2 1 6 6 H 1.48506 * 109.47266 * 322.60278 * 3 2 1 7 7 C 1.46616 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00191 * 25.17140 * 7 2 1 9 9 C 1.39389 * 119.99947 * 205.16290 * 7 2 1 10 10 C 1.41690 * 120.66797 * 14.67336 * 9 7 2 11 11 C 1.35811 * 119.84962 * 180.02562 * 10 9 7 12 12 C 1.39303 * 121.35725 * 0.02608 * 11 10 9 13 13 C 1.37645 * 121.41572 * 359.97256 * 12 11 10 14 14 C 1.39305 * 120.01197 * 359.71341 * 13 12 11 15 15 N 1.37466 * 120.64857 * 180.30325 * 14 13 12 16 16 C 1.39555 * 119.99715 * 250.03601 * 15 14 13 17 17 C 1.39407 * 120.50273 * 185.37933 * 16 15 14 18 18 C 1.38467 * 118.35280 * 179.97438 * 17 16 15 19 19 C 1.38294 * 119.24526 * 0.02562 * 18 17 16 20 20 N 1.48023 * 119.51985 * 179.97438 * 19 18 17 21 21 O 1.31691 * 120.00514 * 359.97438 * 20 19 18 22 22 O 1.31710 * 119.99519 * 180.02562 * 20 19 18 23 23 N 1.31865 * 120.95240 * 359.97438 * 19 18 17 24 24 C 1.31801 * 121.80735 * 359.72841 * 23 19 18 25 25 H 0.97004 * 120.00347 * 174.87707 * 1 2 3 26 26 H 1.07998 * 120.07321 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.31864 * 179.97438 * 11 10 9 28 28 H 1.08002 * 119.29145 * 179.97438 * 12 11 10 29 29 H 1.07997 * 119.98941 * 180.02562 * 13 12 11 30 30 H 0.96993 * 120.00720 * 70.03685 * 15 14 13 31 31 H 1.08003 * 120.81830 * 359.96340 * 17 16 15 32 32 H 1.08000 * 120.37219 * 179.97438 * 18 17 16 33 33 H 1.07996 * 119.67838 * 180.26720 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2289 1.6176 0.0000 4 1 2.3203 2.1365 1.3884 5 1 3.5958 1.4001 -0.5381 6 1 1.5132 2.6025 -0.8503 7 6 2.0279 -1.2698 -0.0006 8 1 1.5647 -2.1605 -0.3988 9 6 3.3225 -1.3274 0.5127 10 6 3.8317 -0.2720 1.3093 11 6 5.0958 -0.3452 1.8005 12 6 5.9132 -1.4422 1.5379 13 6 5.4736 -2.4971 0.7708 14 6 4.1844 -2.4854 0.2432 15 7 3.7298 -3.5349 -0.5196 16 6 3.5240 -3.3641 -1.8893 17 6 2.9586 -4.3846 -2.6524 18 6 2.7739 -4.1673 -4.0074 19 6 3.1536 -2.9555 -4.5552 20 7 2.9595 -2.7169 -6.0032 21 8 2.4291 -3.6551 -6.7599 22 8 3.3182 -1.5665 -6.5348 23 7 3.6860 -2.0097 -3.8063 24 6 3.8743 -2.1721 -2.5120 25 1 -0.4851 -0.8367 -0.0750 26 1 3.2163 0.5889 1.5248 27 1 5.4754 0.4643 2.4064 28 1 6.9132 -1.4655 1.9451 29 1 6.1267 -3.3364 0.5821 30 1 3.5521 -4.3940 -0.1059 31 1 2.6718 -5.3215 -2.1980 32 1 2.3391 -4.9356 -4.6294 33 1 4.3093 -1.3727 -1.9305 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203576084.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:36 Heat of formation + Delta-G solvation = 72.260857 kcal Electronic energy + Delta-G solvation = -21532.763901 eV Core-core repulsion = 18141.135498 eV Total energy + Delta-G solvation = -3391.628403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.00770 -40.05674 -39.26435 -36.89383 -35.78453 -35.53807 -33.69444 -32.32649 -32.10667 -29.91954 -27.64469 -26.37270 -25.07619 -23.74572 -23.28272 -21.87752 -20.29973 -20.01455 -19.44019 -18.68222 -18.33201 -17.27119 -16.94807 -16.54175 -16.35355 -16.06405 -15.84011 -15.12354 -14.93265 -14.57301 -14.42454 -14.06188 -13.85415 -13.34528 -12.84822 -12.69035 -12.57634 -12.45747 -12.28427 -11.95801 -11.88009 -11.72067 -11.39894 -11.15993 -11.07606 -10.96961 -9.81586 -9.63492 -9.55702 -8.74301 -6.57375 -1.78185 -0.10528 -0.02144 0.12297 0.71289 0.94542 1.30411 1.52721 1.67797 1.98412 2.25224 2.38938 2.45105 3.06941 3.37709 3.40781 3.57215 3.60159 4.18856 4.25853 4.33953 4.44842 4.67984 4.72696 4.81901 4.82927 4.94504 5.10729 5.20104 5.33079 5.50705 5.56910 5.77020 5.88173 6.08055 6.14419 6.34343 6.41039 6.44973 6.59648 6.93646 7.61413 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.006149 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.117388 B = 4552.709513 C = 5370.653322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.018 3.982 3 Si 1.098 2.902 4 H -0.254 1.254 5 H -0.253 1.253 6 H -0.290 1.290 7 C -0.499 4.499 8 H 0.065 0.935 9 C 0.090 3.910 10 C -0.276 4.276 11 C -0.056 4.056 12 C -0.269 4.269 13 C -0.044 4.044 14 C -0.074 4.074 15 N -0.591 5.591 16 C 0.241 3.759 17 C -0.155 4.155 18 C -0.022 4.022 19 C 0.085 3.915 20 N 0.007 4.993 21 O -0.173 6.173 22 O -0.242 6.242 23 N -0.426 5.426 24 C 0.074 3.926 25 H 0.293 0.707 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.419 0.581 31 H 0.204 0.796 32 H 0.191 0.809 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.344 -8.531 2.822 10.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.208 4.208 3 Si 0.920 3.080 4 H -0.180 1.180 5 H -0.177 1.177 6 H -0.218 1.218 7 C -0.525 4.525 8 H 0.083 0.917 9 C 0.086 3.914 10 C -0.295 4.295 11 C -0.074 4.074 12 C -0.289 4.289 13 C -0.064 4.064 14 C -0.168 4.168 15 N -0.206 5.206 16 C 0.124 3.876 17 C -0.184 4.184 18 C -0.046 4.046 19 C -0.134 4.134 20 N 0.474 4.526 21 O -0.366 6.366 22 O -0.419 6.419 23 N -0.139 5.139 24 C -0.099 4.099 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.259 0.741 31 H 0.221 0.779 32 H 0.208 0.792 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.381 -6.117 3.074 8.708 hybrid contribution -0.773 -2.181 -0.062 2.315 sum 4.608 -8.298 3.013 9.958 Atomic orbital electron populations 1.70090 1.09464 1.34183 1.25774 1.29824 0.95357 1.07092 0.88568 0.83290 0.75781 0.70203 0.78719 1.17957 1.17675 1.21774 1.21629 0.99309 0.96070 1.35473 0.91656 1.18866 0.91076 0.91759 0.89733 1.20699 0.98664 1.01114 1.09057 1.20612 0.93113 0.97412 0.96285 1.20431 1.00977 0.96964 1.10500 1.20937 0.92476 0.97680 0.95279 1.18156 0.94349 0.94439 1.09903 1.40982 1.64237 1.13304 1.02105 1.19588 0.87924 0.93811 0.86316 1.21481 1.03943 1.01522 0.91499 1.21762 0.92769 0.93914 0.96163 1.20408 1.16859 0.95999 0.80127 1.50441 0.96466 1.01323 1.04348 1.96157 1.44845 1.35682 1.59963 1.96275 1.57492 1.09424 1.78660 1.65972 1.09117 1.31454 1.07395 1.22286 1.02785 0.98145 0.86658 0.89469 0.88925 0.86484 0.86231 0.85793 0.74059 0.77912 0.79188 0.81966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.25 13.58 23.23 0.32 -36.94 16 2 C 0.02 0.83 5.57 87.23 0.49 1.31 16 3 Si 1.10 44.26 24.91 68.60 1.71 45.96 16 4 H -0.25 -9.37 6.75 99.48 0.67 -8.70 16 5 H -0.25 -10.09 6.73 99.48 0.67 -9.42 16 6 H -0.29 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.50 -22.59 8.54 24.74 0.21 -22.38 16 8 H 0.07 3.05 7.29 -2.91 -0.02 3.03 16 9 C 0.09 3.75 4.83 -19.89 -0.10 3.65 16 10 C -0.28 -11.23 7.40 22.56 0.17 -11.06 16 11 C -0.06 -1.98 9.91 21.96 0.22 -1.76 16 12 C -0.27 -8.71 9.98 22.39 0.22 -8.49 16 13 C -0.04 -1.40 9.97 22.39 0.22 -1.17 16 14 C -0.07 -2.57 4.94 40.77 0.20 -2.37 16 15 N -0.59 -16.41 4.84 -175.13 -0.85 -17.25 16 16 C 0.24 7.03 5.74 38.37 0.22 7.25 16 17 C -0.16 -3.41 10.05 22.61 0.23 -3.18 16 18 C -0.02 -0.57 9.61 22.34 0.21 -0.36 16 19 C 0.08 3.06 7.81 129.65 1.01 4.08 16 20 N 0.01 0.29 4.98 -49.85 -0.25 0.04 16 21 O -0.17 -6.33 19.12 3.53 0.07 -6.26 16 22 O -0.24 -10.95 19.75 3.50 0.07 -10.88 16 23 N -0.43 -17.06 10.06 -185.84 -1.87 -18.93 16 24 C 0.07 2.71 9.76 84.88 0.83 3.54 16 25 H 0.29 13.65 8.74 -92.71 -0.81 12.84 16 26 H 0.09 3.79 3.45 -2.91 -0.01 3.78 16 27 H 0.12 3.50 8.06 -2.91 -0.02 3.48 16 28 H 0.12 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.12 3.19 8.06 -2.91 -0.02 3.16 16 30 H 0.42 8.68 8.84 -92.71 -0.82 7.86 16 31 H 0.20 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.19 3.58 7.56 -2.91 -0.02 3.56 16 33 H 0.16 6.47 6.57 -2.91 -0.02 6.45 16 Total: -1.00 -58.13 296.64 3.59 -54.55 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.25 Total: 20.65 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 4.14 Total: -30.94 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -2.65 Total: -73.07 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: 0.14 Total: -17.14 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.71 Total: 45.96 kcal Total: -58.13 3.59 -54.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203576084.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.809 kcal (2) G-P(sol) polarization free energy of solvation -58.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds