Wall clock time and date at job start Tue Mar 31 2020 05:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29522 * 1 3 3 Si 1.86803 * 119.99449 * 2 1 4 4 H 1.48503 * 109.46663 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46930 * 299.99633 * 3 2 1 6 6 H 1.48487 * 109.47372 * 60.00201 * 3 2 1 7 7 C 1.46516 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99851 * 168.48999 * 7 2 1 9 9 C 1.40354 * 120.00048 * 348.47995 * 7 2 1 10 10 C 1.41351 * 120.25193 * 152.90394 * 9 7 2 11 11 C 1.36492 * 119.96677 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.50161 * 359.97438 * 11 10 9 13 13 C 1.39511 * 120.51719 * 359.97438 * 12 11 10 14 14 N 1.39702 * 119.98920 * 180.27720 * 13 12 11 15 15 C 1.39740 * 120.00296 * 331.91651 * 14 13 12 16 16 C 1.39328 * 120.49542 * 149.70165 * 15 14 13 17 17 C 1.38490 * 118.35783 * 179.97438 * 16 15 14 18 18 C 1.38279 * 119.24505 * 359.97438 * 17 16 15 19 19 N 1.48010 * 119.53586 * 179.97438 * 18 17 16 20 20 O 1.31695 * 120.00270 * 359.97438 * 19 18 17 21 21 O 1.31706 * 119.99989 * 180.02562 * 19 18 17 22 22 N 1.31867 * 120.92433 * 0.02562 * 18 17 16 23 23 C 1.31808 * 121.80282 * 359.72265 * 22 18 17 24 24 C 1.38189 * 120.01322 * 0.02562 * 13 12 11 25 25 H 0.96997 * 120.00373 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.01169 * 0.04130 * 10 9 7 27 27 H 1.07998 * 119.74763 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.74062 * 180.02562 * 12 11 10 29 29 H 0.97002 * 120.00079 * 151.91902 * 14 13 12 30 30 H 1.08007 * 120.82168 * 0.02562 * 16 15 14 31 31 H 1.08003 * 120.37837 * 179.97438 * 17 16 15 32 32 H 1.08008 * 119.66765 * 180.28591 * 23 22 18 33 33 H 1.08000 * 120.24403 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2952 0.0000 0.0000 3 14 2.2291 1.6178 0.0000 4 1 3.6891 1.3465 -0.0006 5 1 1.8703 2.3964 -1.2126 6 1 1.8704 2.3965 1.2124 7 6 2.0278 -1.2689 -0.0006 8 1 3.0915 -1.2781 -0.1872 9 6 1.3473 -2.4722 0.2416 10 6 1.8377 -3.6870 -0.2892 11 6 1.1709 -4.8538 -0.0505 12 6 0.0125 -4.8592 0.7115 13 6 -0.4892 -3.6724 1.2463 14 7 -1.6541 -3.6914 2.0172 15 6 -2.6194 -4.6782 1.8005 16 6 -3.4184 -5.1282 2.8495 17 6 -4.3615 -6.1073 2.5849 18 6 -4.4791 -6.6021 1.2990 19 7 -5.4844 -7.6489 1.0091 20 8 -6.2588 -8.1031 1.9726 21 8 -5.6039 -8.1271 -0.2123 22 7 -3.7074 -6.1550 0.3276 23 6 -2.8008 -5.2209 0.5348 24 6 0.1688 -2.4788 1.0179 25 1 -0.4850 0.8400 -0.0004 26 1 2.7396 -3.6919 -0.8832 27 1 1.5485 -5.7799 -0.4582 28 1 -0.5050 -5.7896 0.8930 29 1 -1.7929 -3.0195 2.7030 30 1 -3.3057 -4.7229 3.8442 31 1 -4.9978 -6.4801 3.3738 32 1 -2.1903 -4.8768 -0.2871 33 1 -0.2165 -1.5578 1.4298 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203580661.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:04 Heat of formation + Delta-G solvation = 88.775638 kcal Electronic energy + Delta-G solvation = -20719.883163 eV Core-core repulsion = 17328.970895 eV Total energy + Delta-G solvation = -3390.912268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.99667 -38.76669 -37.91994 -35.69497 -34.29687 -33.75472 -32.65834 -31.04392 -30.00452 -28.37102 -26.31987 -25.29191 -24.02544 -22.68403 -21.31922 -20.59095 -18.85877 -18.22149 -18.02257 -17.28234 -16.36200 -16.08719 -15.81552 -15.18542 -15.05264 -14.78798 -14.08744 -13.91562 -13.45004 -13.24951 -13.01331 -12.66544 -12.26894 -11.74684 -11.37953 -11.26115 -11.12854 -11.05751 -10.84658 -10.66821 -10.54067 -10.22062 -10.04625 -10.00680 -9.94454 -9.58931 -8.77530 -7.73713 -7.19942 -6.95318 -4.63831 -0.60741 0.82395 1.08774 1.10112 2.48787 2.74662 2.85969 2.90174 2.96212 3.25079 3.38028 3.63840 4.08786 4.24643 4.34315 4.47029 4.54270 5.18388 5.28123 5.35415 5.57361 5.79129 5.90260 6.15826 6.17521 6.47364 6.57815 6.66964 6.75366 6.82446 6.90845 7.22820 7.46514 7.50155 7.64870 7.75820 7.85497 7.92850 8.30663 8.51154 8.69420 9.73340 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.031207 B = 0.003465 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.009660 B = 8080.002137 C = 8420.702367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.074 3.926 3 Si 0.917 3.083 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.462 4.462 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.236 4.236 11 C -0.063 4.063 12 C -0.288 4.288 13 C 0.154 3.846 14 N -0.645 5.645 15 C 0.221 3.779 16 C -0.157 4.157 17 C -0.045 4.045 18 C 0.129 3.871 19 N -0.002 5.002 20 O -0.198 6.198 21 O -0.150 6.150 22 N -0.398 5.398 23 C 0.088 3.912 24 C -0.201 4.201 25 H 0.288 0.712 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.412 0.588 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.189 0.811 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 -1.199 6.091 6.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.490 4.490 8 H 0.103 0.897 9 C 0.124 3.876 10 C -0.256 4.256 11 C -0.081 4.081 12 C -0.309 4.309 13 C 0.061 3.939 14 N -0.263 5.263 15 C 0.108 3.892 16 C -0.187 4.187 17 C -0.068 4.068 18 C -0.089 4.089 19 N 0.474 4.526 20 O -0.381 6.381 21 O -0.349 6.349 22 N -0.111 5.111 23 C -0.082 4.082 24 C -0.223 4.223 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.249 0.751 30 H 0.175 0.825 31 H 0.179 0.821 32 H 0.206 0.794 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.059 -1.022 5.395 6.285 hybrid contribution 0.000 1.022 0.890 1.355 sum -3.059 -0.001 6.285 6.990 Atomic orbital electron populations 1.69108 1.08702 1.30342 1.30337 1.27463 0.94554 1.01954 0.91097 0.86099 0.81286 0.79647 0.78882 1.17859 1.19574 1.19457 1.20767 0.95920 0.89236 1.43037 0.89686 1.17361 0.90434 0.92238 0.87530 1.20873 1.03485 0.93277 1.07925 1.20077 0.94411 0.96738 0.96921 1.20092 1.02641 0.94421 1.13778 1.17649 0.85526 0.95100 0.95636 1.42471 1.16642 1.28483 1.38664 1.19237 0.87619 0.88582 0.93724 1.21245 0.98879 0.99068 0.99481 1.21458 0.96452 0.93756 0.95133 1.20170 0.98068 0.98756 0.91951 1.50191 1.00041 0.99940 1.02453 1.96239 1.41197 1.64005 1.36628 1.96278 1.75971 1.61109 1.01576 1.66283 1.02257 1.08677 1.33858 1.22904 0.95430 0.93731 0.96174 1.21055 1.01213 0.94326 1.05702 0.89970 0.88700 0.88881 0.89271 0.75100 0.82456 0.82130 0.79418 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.92 10.92 55.98 0.61 -16.31 16 2 C 0.07 1.62 5.41 -15.19 -0.08 1.53 16 3 Si 0.92 16.25 29.66 -169.99 -5.04 11.21 16 4 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 5 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 6 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 7 C -0.46 -10.81 9.31 -35.45 -0.33 -11.14 16 8 H 0.09 1.93 7.96 -52.49 -0.42 1.51 16 9 C 0.13 2.98 5.60 -106.82 -0.60 2.38 16 10 C -0.24 -5.14 9.76 -39.03 -0.38 -5.52 16 11 C -0.06 -1.25 9.96 -40.06 -0.40 -1.65 16 12 C -0.29 -5.55 7.92 -38.95 -0.31 -5.86 16 13 C 0.15 2.92 5.99 -83.82 -0.50 2.42 16 14 N -0.64 -9.52 5.47 -8.35 -0.05 -9.56 16 15 C 0.22 3.04 5.94 -83.60 -0.50 2.54 16 16 C -0.16 -1.72 10.10 -39.08 -0.39 -2.12 16 17 C -0.04 -0.54 9.61 -39.47 -0.38 -0.91 16 18 C 0.13 2.03 7.81 -146.18 -1.14 0.89 16 19 N 0.00 -0.04 4.98 32.89 0.16 0.12 16 20 O -0.20 -3.32 19.12 -31.56 -0.60 -3.92 16 21 O -0.15 -2.85 19.75 -31.57 -0.62 -3.48 16 22 N -0.40 -6.70 10.06 -10.11 -0.10 -6.80 16 23 C 0.09 1.37 9.00 -17.32 -0.16 1.22 16 24 C -0.20 -4.38 8.64 -38.51 -0.33 -4.72 16 25 H 0.29 5.73 8.27 -40.82 -0.34 5.39 16 26 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 27 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.09 1.62 6.46 -52.49 -0.34 1.28 16 29 H 0.41 5.10 8.90 -40.82 -0.36 4.73 16 30 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 31 H 0.16 1.53 7.56 -52.48 -0.40 1.13 16 32 H 0.19 3.11 6.60 -52.48 -0.35 2.76 16 33 H 0.12 2.74 6.17 -52.49 -0.32 2.42 16 LS Contribution 302.45 15.07 4.56 4.56 Total: -1.00 -25.99 302.45 -9.17 -35.16 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -2.59 Total: 9.97 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -5.50 Total: -20.94 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.63 Total: -32.55 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -1.23 Total: -7.40 kcal Atomic # 14 Polarization: 16.25 SS G_CDS: -5.04 Total: 11.21 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -25.99 -9.17 -35.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203580661.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.937 kcal (2) G-P(sol) polarization free energy of solvation -25.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds