Wall clock time and date at job start Tue Mar 31 2020 05:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.46851 * 2 1 4 4 C 1.34236 * 116.99882 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99957 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99849 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47006 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.47192 * 54.99985 * 7 6 4 9 9 C 1.50702 * 109.47245 * 175.00084 * 7 6 4 10 10 H 1.08002 * 120.00299 * 240.00501 * 9 7 6 11 11 C 1.37884 * 119.99942 * 59.72060 * 9 7 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 O 1.42899 * 109.47132 * 295.00062 * 7 6 4 18 18 C 1.42899 * 113.99934 * 150.00041 * 17 7 6 19 19 C 1.50702 * 109.47135 * 179.97438 * 18 17 7 20 20 N 1.29032 * 124.91122 * 89.69369 * 19 18 17 21 21 C 1.31785 * 117.11884 * 179.81520 * 20 19 18 22 22 C 1.33638 * 114.50306 * 0.46927 * 21 20 19 23 23 S 1.70975 * 124.92058 * 270.00095 * 19 18 17 24 24 H 1.09002 * 109.47057 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47437 * 299.99465 * 1 2 3 26 26 H 1.08996 * 109.47539 * 60.00348 * 1 2 3 27 27 H 1.08997 * 109.47243 * 240.00214 * 2 1 3 28 28 H 1.09003 * 109.47024 * 120.00085 * 2 1 3 29 29 H 1.09001 * 109.47070 * 59.99913 * 6 4 3 30 30 H 1.09004 * 109.47393 * 300.00171 * 6 4 3 31 31 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 32 32 H 1.08997 * 109.47412 * 300.00099 * 18 17 7 33 33 H 1.09001 * 109.47241 * 59.99973 * 18 17 7 34 34 H 1.08001 * 122.74771 * 180.23611 * 21 20 19 35 35 H 1.08002 * 126.03976 * 179.71695 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9374 0.0012 7 6 5.4485 2.8574 0.0010 8 1 5.7805 2.2502 -0.8411 9 6 6.0242 4.2447 -0.1222 10 1 6.6589 4.4936 -0.9598 11 6 5.7359 5.1979 0.8315 12 7 4.9631 4.8949 1.8515 13 14 6.4433 6.9196 0.6747 14 1 5.5063 7.7710 -0.1016 15 1 6.6352 7.5011 2.0276 16 1 7.7507 6.8558 -0.0267 17 8 5.8945 2.2633 1.2218 18 6 7.1177 1.5345 1.1006 19 6 7.4919 0.9549 2.4404 20 7 7.1252 -0.2046 2.8718 21 6 7.5454 -0.5605 4.0691 22 6 8.3009 0.3533 4.6857 23 16 8.4576 1.7413 3.6118 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.5843 3.4693 0.8912 30 1 3.5850 3.4699 -0.8888 31 1 4.7605 5.5654 2.5226 32 1 6.9902 0.7283 0.3783 33 1 7.9078 2.2045 0.7615 34 1 7.2963 -1.5112 4.5169 35 1 8.7375 0.2581 5.6689 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223351333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:26 Heat of formation + Delta-G solvation = -87.547547 kcal Electronic energy + Delta-G solvation = -20474.421450 eV Core-core repulsion = 17179.014436 eV Total energy + Delta-G solvation = -3295.407015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.62947 -39.14503 -36.85592 -35.61788 -33.07130 -31.49857 -30.82727 -29.64863 -26.73049 -26.04070 -23.28172 -22.96317 -21.57964 -19.77225 -19.44251 -17.59765 -17.10486 -16.51220 -16.04876 -15.60981 -15.17607 -15.03755 -14.51281 -13.99655 -13.84150 -13.60258 -13.40122 -13.01877 -12.71135 -12.33886 -12.09227 -11.68500 -11.40344 -11.16624 -11.09843 -11.05810 -10.96877 -10.75018 -10.56641 -10.02177 -9.94355 -9.51919 -9.28948 -9.13010 -8.95679 -8.66254 -8.49540 -8.00326 -6.11294 -4.30944 1.10644 1.81885 2.23102 3.17305 3.21969 3.25132 3.31538 3.33479 3.45811 4.31901 4.57119 5.08056 5.16432 5.23344 5.38504 5.42623 5.47258 5.58784 5.79512 5.80823 5.97508 6.02673 6.15642 6.20415 6.30482 6.50538 6.57481 6.69196 6.92309 7.13963 7.46978 7.75523 8.07556 8.21262 8.52434 8.68276 8.91643 9.45471 10.90027 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.009864 B = 0.007603 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.942683 B = 3681.651728 C = 6036.354455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.369 6.369 4 C 0.456 3.544 5 O -0.511 6.511 6 C -0.101 4.101 7 C 0.232 3.768 8 H 0.018 0.982 9 C -0.562 4.562 10 H 0.063 0.937 11 C 0.086 3.914 12 N -0.855 5.855 13 Si 0.889 3.111 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.272 1.272 17 O -0.354 6.354 18 C 0.147 3.853 19 C 0.081 3.919 20 N -0.471 5.471 21 C 0.037 3.963 22 C -0.283 4.283 23 S 0.138 5.862 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.137 0.863 30 H 0.095 0.905 31 H 0.264 0.736 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.169 0.831 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 -6.521 1.498 6.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.287 6.287 4 C 0.300 3.700 5 O -0.398 6.398 6 C -0.138 4.138 7 C 0.176 3.824 8 H 0.036 0.964 9 C -0.599 4.599 10 H 0.081 0.919 11 C -0.121 4.121 12 N -0.491 5.491 13 Si 0.716 3.284 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.197 1.197 17 O -0.273 6.273 18 C 0.066 3.934 19 C -0.196 4.196 20 N -0.187 5.187 21 C -0.115 4.115 22 C -0.423 4.423 23 S 0.392 5.608 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.155 0.845 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.186 0.814 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.080 -6.096 1.538 6.288 hybrid contribution 0.205 -0.106 0.401 0.462 sum 0.124 -6.202 1.939 6.499 Atomic orbital electron populations 1.21773 0.93461 1.02215 1.03237 1.22819 0.94703 0.82005 1.01965 1.86579 1.26457 1.30789 1.84918 1.24951 0.79331 0.94446 0.71273 1.90590 1.60097 1.43562 1.45515 1.21864 0.97503 0.87830 1.06624 1.19386 0.88194 0.91909 0.82936 0.96359 1.21488 1.32757 0.95620 1.10040 0.91897 1.25017 0.93968 0.98544 0.94524 1.69897 1.34421 1.33921 1.10812 0.86654 0.79770 0.84347 0.77591 1.20390 1.20993 1.19718 1.88080 1.35776 1.68172 1.35248 1.20457 0.91015 0.94550 0.87383 1.27161 0.98365 0.92539 1.01574 1.66323 1.22402 1.16006 1.13975 1.21761 0.97953 1.01057 0.90730 1.27039 1.10763 0.98357 1.06149 1.84066 1.47927 1.19375 1.09433 0.90944 0.91663 0.91781 0.91997 0.91802 0.84529 0.88686 0.92567 0.92000 0.92128 0.81422 0.81184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.29 37.16 0.38 -1.36 16 2 C 0.06 0.93 6.19 37.16 0.23 1.16 16 3 O -0.37 -7.19 10.22 -39.27 -0.40 -7.59 16 4 C 0.46 10.12 7.84 36.00 0.28 10.40 16 5 O -0.51 -12.33 15.17 -24.06 -0.36 -12.69 16 6 C -0.10 -2.32 5.22 -27.89 -0.15 -2.47 16 7 C 0.23 5.74 1.82 -27.88 -0.05 5.69 16 8 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 9 C -0.56 -14.44 8.90 -34.44 -0.31 -14.75 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.09 2.22 5.24 -17.82 -0.09 2.13 16 12 N -0.86 -22.87 10.92 55.43 0.61 -22.27 16 13 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 14 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 17 O -0.35 -9.07 8.60 -49.71 -0.43 -9.50 16 18 C 0.15 3.26 6.31 36.01 0.23 3.48 16 19 C 0.08 1.68 7.02 -13.45 -0.09 1.59 16 20 N -0.47 -9.65 10.54 -11.86 -0.13 -9.77 16 21 C 0.04 0.61 11.35 -19.18 -0.22 0.40 16 22 C -0.28 -4.21 11.37 29.12 0.33 -3.87 16 23 S 0.14 2.39 23.18 -107.50 -2.49 -0.10 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 28 H 0.06 1.04 8.13 -51.93 -0.42 0.61 16 29 H 0.14 3.45 6.21 -51.93 -0.32 3.13 16 30 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -30.49 322.15 -7.31 -37.80 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -4.49 Total: 2.00 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 0.54 Total: 2.40 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.48 Total: -32.04 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -1.19 Total: -29.78 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.49 Total: -0.10 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.49 -7.31 -37.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223351333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.745 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds