Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48499 * 109.47097 * 269.99689 * 3 2 1 5 5 H 1.48501 * 109.47166 * 29.99782 * 3 2 1 6 6 H 1.48504 * 109.46814 * 149.99660 * 3 2 1 7 7 C 1.38665 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99893 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.35616 * 117.00140 * 185.06012 * 9 7 2 11 11 C 1.38790 * 120.14408 * 354.40453 * 10 9 7 12 12 C 1.38073 * 120.05487 * 179.97438 * 11 10 9 13 13 C 1.38481 * 120.33876 * 359.97438 * 12 11 10 14 14 C 1.37961 * 120.28268 * 359.70304 * 13 12 11 15 15 C 1.39373 * 119.94069 * 0.57545 * 14 13 12 16 16 C 1.48161 * 120.16719 * 179.72315 * 15 14 13 17 17 N 1.32773 * 119.14897 * 179.70053 * 16 15 14 18 18 C 1.32017 * 120.94558 * 180.02562 * 17 16 15 19 19 C 1.38898 * 119.25211 * 0.02562 * 18 17 16 20 20 C 1.39565 * 118.44497 * 359.97438 * 19 18 17 21 21 C 1.48473 * 120.49617 * 180.02562 * 20 19 18 22 22 N 1.34785 * 119.99790 * 179.97438 * 21 20 19 23 23 O 1.21472 * 120.00600 * 359.97438 * 21 20 19 24 24 N 1.32433 * 119.14892 * 359.72354 * 16 15 14 25 25 H 0.96997 * 119.99984 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.97334 * 359.97438 * 11 10 9 27 27 H 1.08004 * 119.83107 * 179.97438 * 12 11 10 28 28 H 1.08001 * 119.85417 * 179.97438 * 13 12 11 29 29 H 1.08001 * 120.03371 * 180.26889 * 14 13 12 30 30 H 1.07995 * 120.37332 * 179.97438 * 18 17 16 31 31 H 1.08008 * 120.77833 * 179.97438 * 19 18 17 32 32 H 0.97003 * 119.99836 * 0.02562 * 22 21 20 33 33 H 0.96998 * 120.00022 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5470 1.4402 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0692 -3.5034 0.1077 11 6 3.4556 -3.4402 0.0942 12 6 4.2017 -4.5969 0.2039 13 6 3.5739 -5.8250 0.3284 14 6 2.1967 -5.9033 0.3500 15 6 1.4321 -4.7438 0.2342 16 6 -0.0473 -4.8227 0.2507 17 7 -0.7558 -3.7048 0.1450 18 6 -2.0756 -3.7339 0.1561 19 6 -2.7265 -4.9546 0.2810 20 6 -1.9540 -6.1118 0.3901 21 6 -2.6024 -7.4406 0.5251 22 7 -1.8467 -8.5518 0.6292 23 8 -3.8140 -7.5265 0.5416 24 7 -0.6288 -6.0064 0.3709 25 1 -0.4850 0.8400 -0.0004 26 1 3.9514 -2.4855 -0.0021 27 1 5.2803 -4.5436 0.1926 28 1 4.1651 -6.7248 0.4132 29 1 1.7114 -6.8627 0.4516 30 1 -2.6427 -2.8189 0.0699 31 1 -3.8053 -5.0070 0.2933 32 1 -0.8792 -8.4832 0.6164 33 1 -2.2703 -9.4199 0.7170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243579576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -0.854627 kcal Electronic energy + Delta-G solvation = -21389.561150 eV Core-core repulsion = 17994.762222 eV Total energy + Delta-G solvation = -3394.798928 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.18951 -40.68289 -40.04914 -38.01166 -35.31347 -34.29386 -34.16643 -33.87025 -31.06332 -30.35995 -27.35024 -26.64420 -25.54311 -23.20104 -22.99348 -21.79033 -19.73799 -19.50899 -18.80756 -18.45995 -17.54344 -16.77715 -16.49283 -16.42312 -16.24368 -15.96840 -15.60804 -15.53895 -15.06630 -14.97859 -14.70951 -14.42965 -14.13146 -13.47438 -13.03044 -12.52496 -12.45550 -12.32592 -12.10944 -11.86585 -11.84707 -11.68287 -11.13767 -11.06240 -10.79841 -10.72600 -10.12355 -9.49432 -8.85176 -8.36882 -6.01252 -0.58002 -0.28821 0.74513 0.83732 1.38955 1.47438 1.54151 1.70316 2.12682 2.20762 2.73085 2.77805 3.02119 3.21221 3.33077 3.54619 3.71475 3.87043 4.08873 4.24112 4.28050 4.44238 4.55665 4.68106 4.79392 5.06993 5.18985 5.24229 5.30265 5.59946 5.69228 5.71182 5.78335 5.92892 6.06505 6.24337 6.27028 7.04673 7.08917 7.16814 7.88165 8.81722 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.017807 B = 0.005463 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.075948 B = 5124.606317 C = 6682.145124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C -0.010 4.010 3 Si 1.009 2.991 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.423 4.423 8 H 0.099 0.901 9 O -0.163 6.163 10 C 0.147 3.853 11 C -0.260 4.260 12 C -0.043 4.043 13 C -0.206 4.206 14 C -0.022 4.022 15 C -0.162 4.162 16 C 0.356 3.644 17 N -0.490 5.490 18 C 0.149 3.851 19 C -0.188 4.188 20 C 0.109 3.891 21 C 0.588 3.412 22 N -0.807 5.807 23 O -0.561 6.561 24 N -0.491 5.491 25 H 0.269 0.731 26 H 0.124 0.876 27 H 0.150 0.850 28 H 0.158 0.842 29 H 0.153 0.847 30 H 0.182 0.818 31 H 0.174 0.826 32 H 0.422 0.578 33 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 -12.796 1.084 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.210 4.210 3 Si 0.830 3.170 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.500 4.500 8 H 0.116 0.884 9 O -0.064 6.064 10 C 0.091 3.909 11 C -0.279 4.279 12 C -0.062 4.062 13 C -0.224 4.224 14 C -0.041 4.041 15 C -0.166 4.166 16 C 0.095 3.905 17 N -0.204 5.204 18 C -0.019 4.019 19 C -0.211 4.211 20 C -0.040 4.040 21 C 0.370 3.630 22 N -0.371 5.371 23 O -0.439 6.439 24 N -0.209 5.209 25 H 0.078 0.922 26 H 0.141 0.859 27 H 0.168 0.832 28 H 0.176 0.824 29 H 0.170 0.830 30 H 0.199 0.801 31 H 0.192 0.808 32 H 0.254 0.746 33 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.252 -12.457 1.051 12.703 hybrid contribution -0.527 0.974 -0.044 1.109 sum 1.726 -11.483 1.007 11.655 Atomic orbital electron populations 1.70233 1.07538 1.28154 1.46289 1.26383 0.96746 1.02063 0.95857 0.84719 0.77965 0.75402 0.78951 1.19208 1.19925 1.17965 1.21914 0.92511 0.82147 1.53387 0.88411 1.84238 1.33975 1.11320 1.76852 1.19934 0.91430 0.87689 0.91879 1.21268 0.92569 1.00682 1.13412 1.21381 1.00588 0.91376 0.92838 1.21122 0.93703 0.98441 1.09153 1.21166 0.93904 0.96138 0.92901 1.17559 0.87431 0.92657 1.18970 1.21424 0.94883 0.83306 0.90922 1.68827 1.09008 1.31463 1.11082 1.23735 0.89830 0.98777 0.89587 1.23061 1.03976 0.92726 1.01322 1.21671 0.89857 0.95396 0.97068 1.17608 0.85714 0.83815 0.75902 1.43429 1.12211 1.08190 1.73319 1.90801 1.14271 1.86760 1.52037 1.68148 1.10374 1.27582 1.14761 0.92196 0.85877 0.83210 0.82397 0.82960 0.80130 0.80810 0.74636 0.74601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.59 13.67 21.61 0.30 -51.29 16 2 C -0.01 -0.52 5.49 84.84 0.47 -0.05 16 3 Si 1.01 41.60 29.55 68.60 2.03 43.63 16 4 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.42 -23.66 9.49 67.92 0.64 -23.02 16 8 H 0.10 5.03 5.21 -2.91 -0.02 5.02 16 9 O -0.16 -9.31 7.55 -21.09 -0.16 -9.47 16 10 C 0.15 7.14 6.65 22.83 0.15 7.29 16 11 C -0.26 -10.74 9.16 22.36 0.20 -10.53 16 12 C -0.04 -1.35 10.03 22.29 0.22 -1.12 16 13 C -0.21 -5.75 10.03 22.26 0.22 -5.52 16 14 C -0.02 -0.70 9.56 22.48 0.21 -0.48 16 15 C -0.16 -6.92 5.89 -19.94 -0.12 -7.04 16 16 C 0.36 15.28 7.55 137.49 1.04 16.32 16 17 N -0.49 -23.10 8.14 -189.26 -1.54 -24.64 16 18 C 0.15 5.75 11.30 84.82 0.96 6.71 16 19 C -0.19 -6.10 9.72 22.75 0.22 -5.88 16 20 C 0.11 3.53 6.79 42.02 0.29 3.81 16 21 C 0.59 16.11 8.10 86.97 0.70 16.81 16 22 N -0.81 -14.54 8.87 -175.17 -1.55 -16.09 16 23 O -0.56 -18.07 17.25 -3.63 -0.06 -18.14 16 24 N -0.49 -17.02 8.71 -178.44 -1.55 -18.58 16 25 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 26 H 0.12 5.15 5.64 -2.91 -0.02 5.13 16 27 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 28 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.15 3.97 7.51 -2.91 -0.02 3.95 16 30 H 0.18 6.33 8.06 -2.91 -0.02 6.31 16 31 H 0.17 4.73 7.73 -2.91 -0.02 4.71 16 32 H 0.42 6.59 8.21 -92.71 -0.76 5.83 16 33 H 0.42 5.28 8.93 -92.71 -0.83 4.45 16 Total: -1.00 -73.39 300.54 2.29 -71.10 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.39 Total: 26.19 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 5.22 Total: -2.71 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -4.35 Total: -110.60 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.22 Total: -27.61 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -73.39 2.29 -71.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243579576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.249 kcal (2) G-P(sol) polarization free energy of solvation -73.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds