Wall clock time and date at job start Tue Mar 31 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31528 * 1 3 3 Si 1.86804 * 120.00343 * 2 1 4 4 H 1.48492 * 109.46982 * 269.99820 * 3 2 1 5 5 H 1.48505 * 109.46919 * 29.99628 * 3 2 1 6 6 H 1.48503 * 109.47187 * 149.99360 * 3 2 1 7 7 C 1.38678 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00141 * 179.97438 * 7 2 1 9 9 O 1.34800 * 120.00105 * 0.02562 * 7 2 1 10 10 C 1.35605 * 117.00092 * 174.54027 * 9 7 2 11 11 C 1.38789 * 120.14993 * 354.05513 * 10 9 7 12 12 C 1.38076 * 120.06183 * 180.27819 * 11 10 9 13 13 C 1.38499 * 120.36013 * 359.71813 * 12 11 10 14 14 C 1.37927 * 120.29625 * 359.97438 * 13 12 11 15 15 C 1.39467 * 119.93311 * 0.02562 * 14 13 12 16 16 C 1.47960 * 120.17438 * 180.02562 * 15 14 13 17 17 N 1.33062 * 120.18261 * 97.60794 * 16 15 14 18 18 C 1.31908 * 119.96794 * 179.97438 * 17 16 15 19 19 C 1.38914 * 120.34246 * 0.02562 * 18 17 16 20 20 N 1.31762 * 120.37103 * 359.97438 * 19 18 17 21 21 C 1.32970 * 120.02782 * 0.02562 * 20 19 18 22 22 C 1.47886 * 120.16994 * 179.97438 * 21 20 19 23 23 N 1.34778 * 120.00090 * 3.52021 * 22 21 20 24 24 O 1.21549 * 119.99939 * 183.51724 * 22 21 20 25 25 H 0.97003 * 120.00159 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.96694 * 359.97414 * 11 10 9 27 27 H 1.08003 * 119.81745 * 179.74577 * 12 11 10 28 28 H 1.07999 * 119.85106 * 180.02562 * 13 12 11 29 29 H 1.08004 * 120.03662 * 179.97438 * 14 13 12 30 30 H 1.07999 * 119.83553 * 180.02562 * 18 17 16 31 31 H 1.07995 * 119.81466 * 179.97438 * 19 18 17 32 32 H 0.97001 * 119.99714 * 359.97438 * 23 22 21 33 33 H 0.96994 * 119.99721 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4468 2.6527 0.7000 6 1 3.5469 1.4401 0.7002 7 6 2.0086 -1.2010 0.0005 8 1 3.0887 -1.2011 0.0001 9 8 1.3346 -2.3684 0.0005 10 6 2.0684 -3.5030 -0.1139 11 6 3.4345 -3.4291 -0.3478 12 6 4.1789 -4.5855 -0.4697 13 6 3.5712 -5.8247 -0.3541 14 6 2.2158 -5.9154 -0.1154 15 6 1.4520 -4.7552 0.0099 16 6 -0.0023 -4.8463 0.2665 17 7 -0.4717 -4.7266 1.5058 18 6 -1.7691 -4.8080 1.7297 19 6 -2.6510 -5.0189 0.6773 20 7 -2.2008 -5.1393 -0.5551 21 6 -0.8958 -5.0597 -0.7976 22 6 -0.3870 -5.1949 -2.1796 23 7 -1.2507 -5.3284 -3.2057 24 8 0.8100 -5.1857 -2.3902 25 1 -0.4850 0.8401 -0.0004 26 1 3.9147 -2.4661 -0.4394 27 1 5.2410 -4.5234 -0.6558 28 1 4.1615 -6.7240 -0.4505 29 1 1.7461 -6.8839 -0.0264 30 1 -2.1478 -4.7102 2.7364 31 1 -3.7115 -5.0845 0.8704 32 1 -2.2060 -5.3361 -3.0376 33 1 -0.9170 -5.4174 -4.1120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580014.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:30 Heat of formation + Delta-G solvation = 19.194441 kcal Electronic energy + Delta-G solvation = -22129.615157 eV Core-core repulsion = 18735.685622 eV Total energy + Delta-G solvation = -3393.929535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.93738 -38.82144 -38.54757 -36.29409 -34.34115 -33.04656 -32.36241 -32.06908 -29.38528 -28.61215 -25.34342 -25.23945 -24.24103 -21.51170 -21.01056 -20.91636 -17.92927 -17.89844 -17.59414 -17.26643 -16.08826 -15.77570 -15.12390 -14.92148 -14.59468 -14.30309 -14.16436 -13.67645 -13.51284 -13.43308 -13.18590 -12.60707 -12.43059 -11.66664 -11.42793 -11.29812 -10.98178 -10.89280 -10.77543 -10.64318 -10.41038 -9.97532 -9.43263 -9.38614 -8.98642 -8.89536 -8.80487 -7.86865 -7.12257 -6.42827 -4.00760 0.71986 1.33935 2.16888 2.51050 3.11766 3.14502 3.15056 3.19518 3.59142 3.98427 4.10687 4.30327 4.40102 4.58789 4.81790 5.06043 5.12650 5.26631 5.51184 5.53734 5.57515 5.73084 5.89943 6.14984 6.34148 6.50955 6.76139 6.86247 7.01431 7.11179 7.26230 7.34482 7.42258 7.44334 7.58685 7.87613 8.00950 8.02783 8.54488 9.03216 9.73306 10.75390 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.007303 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.048157 B = 3832.868444 C = 4670.184704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.040 3.960 3 Si 0.939 3.061 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.389 4.389 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.184 3.816 11 C -0.229 4.229 12 C -0.064 4.064 13 C -0.207 4.207 14 C -0.031 4.031 15 C -0.114 4.114 16 C 0.227 3.773 17 N -0.425 5.425 18 C 0.080 3.920 19 C 0.032 3.968 20 N -0.415 5.415 21 C 0.030 3.970 22 C 0.579 3.421 23 N -0.843 5.843 24 O -0.498 6.498 25 H 0.268 0.732 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.172 0.828 31 H 0.172 0.828 32 H 0.406 0.594 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 -9.982 -0.941 10.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.465 4.465 8 H 0.109 0.891 9 O -0.078 6.078 10 C 0.129 3.871 11 C -0.248 4.248 12 C -0.083 4.083 13 C -0.226 4.226 14 C -0.050 4.050 15 C -0.117 4.117 16 C 0.088 3.912 17 N -0.139 5.139 18 C -0.082 4.082 19 C -0.131 4.131 20 N -0.133 5.133 21 C -0.112 4.112 22 C 0.360 3.640 23 N -0.407 5.407 24 O -0.371 6.371 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.189 0.811 31 H 0.189 0.811 32 H 0.235 0.765 33 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.612 -9.721 -0.884 10.408 hybrid contribution -0.133 0.986 -0.275 1.032 sum -3.745 -8.736 -1.159 9.575 Atomic orbital electron populations 1.70030 1.05968 1.27473 1.46449 1.25258 0.95814 0.98739 0.96584 0.85733 0.79017 0.80149 0.78688 1.19918 1.20303 1.19100 1.21321 0.91796 0.80761 1.52624 0.89067 1.83931 1.34269 1.11404 1.78184 1.19084 0.90155 0.86591 0.91244 1.21034 0.93783 0.99064 1.10900 1.20781 0.98395 0.92308 0.96794 1.20380 0.94364 0.96804 1.11046 1.20338 0.93487 0.94937 0.96228 1.17020 0.88522 0.91871 1.14260 1.20558 0.94863 0.88084 0.87679 1.68831 1.14749 1.08610 1.21681 1.24054 0.89709 0.93195 1.01271 1.23667 1.01775 0.99042 0.88627 1.68156 1.13822 1.08208 1.23086 1.22062 0.90058 1.03276 0.95764 1.17526 0.86040 0.76577 0.83809 1.43580 1.10792 1.77079 1.09281 1.90953 1.14329 1.47766 1.84004 0.92195 0.85369 0.87402 0.87427 0.87717 0.81119 0.81090 0.76458 0.76691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.79 13.67 55.48 0.76 -25.03 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.39 -11.21 9.44 30.89 0.29 -10.91 16 8 H 0.09 2.44 5.30 -52.48 -0.28 2.16 16 9 O -0.17 -5.18 9.21 0.58 0.01 -5.17 16 10 C 0.18 4.76 6.63 -38.67 -0.26 4.50 16 11 C -0.23 -5.32 9.12 -39.44 -0.36 -5.68 16 12 C -0.06 -1.27 10.03 -39.54 -0.40 -1.67 16 13 C -0.21 -3.92 10.03 -39.60 -0.40 -4.32 16 14 C -0.03 -0.63 8.64 -39.24 -0.34 -0.97 16 15 C -0.11 -2.64 3.44 -104.75 -0.36 -3.00 16 16 C 0.23 4.95 5.75 -82.47 -0.47 4.48 16 17 N -0.43 -8.70 10.45 -9.31 -0.10 -8.79 16 18 C 0.08 1.24 11.22 -17.27 -0.19 1.05 16 19 C 0.03 0.45 11.22 -17.33 -0.19 0.25 16 20 N -0.42 -6.90 9.71 -9.38 -0.09 -6.99 16 21 C 0.03 0.59 6.78 -82.54 -0.56 0.03 16 22 C 0.58 11.06 8.05 -12.31 -0.10 10.96 16 23 N -0.84 -11.69 8.86 30.54 0.27 -11.42 16 24 O -0.50 -11.04 14.35 5.32 0.08 -10.96 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.13 2.93 5.72 -52.49 -0.30 2.63 16 27 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 28 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 30 H 0.17 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.41 4.80 8.19 -40.82 -0.33 4.47 16 33 H 0.40 4.64 8.93 -40.82 -0.36 4.28 16 LS Contribution 299.70 15.07 4.52 4.52 Total: -1.00 -35.89 299.70 -5.55 -41.43 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -2.53 Total: 10.63 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.43 Total: -4.24 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.84 Total: -52.23 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.08 Total: -16.13 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.89 -5.55 -41.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580014.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.626 kcal (2) G-P(sol) polarization free energy of solvation -35.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds