Wall clock time and date at job start Tue Mar 31 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31528 * 1 3 3 Si 1.86804 * 120.00343 * 2 1 4 4 H 1.48492 * 109.46982 * 269.99820 * 3 2 1 5 5 H 1.48505 * 109.46919 * 29.99628 * 3 2 1 6 6 H 1.48503 * 109.47187 * 149.99360 * 3 2 1 7 7 C 1.38678 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00141 * 179.97438 * 7 2 1 9 9 O 1.34800 * 120.00105 * 0.02562 * 7 2 1 10 10 C 1.35605 * 117.00092 * 174.54027 * 9 7 2 11 11 C 1.38789 * 120.14993 * 354.05513 * 10 9 7 12 12 C 1.38076 * 120.06183 * 180.27819 * 11 10 9 13 13 C 1.38499 * 120.36013 * 359.71813 * 12 11 10 14 14 C 1.37927 * 120.29625 * 359.97438 * 13 12 11 15 15 C 1.39467 * 119.93311 * 0.02562 * 14 13 12 16 16 C 1.47960 * 120.17438 * 180.02562 * 15 14 13 17 17 N 1.33062 * 120.18261 * 97.60794 * 16 15 14 18 18 C 1.31908 * 119.96794 * 179.97438 * 17 16 15 19 19 C 1.38914 * 120.34246 * 0.02562 * 18 17 16 20 20 N 1.31762 * 120.37103 * 359.97438 * 19 18 17 21 21 C 1.32970 * 120.02782 * 0.02562 * 20 19 18 22 22 C 1.47886 * 120.16994 * 179.97438 * 21 20 19 23 23 N 1.34778 * 120.00090 * 3.52021 * 22 21 20 24 24 O 1.21549 * 119.99939 * 183.51724 * 22 21 20 25 25 H 0.97003 * 120.00159 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.96694 * 359.97414 * 11 10 9 27 27 H 1.08003 * 119.81745 * 179.74577 * 12 11 10 28 28 H 1.07999 * 119.85106 * 180.02562 * 13 12 11 29 29 H 1.08004 * 120.03662 * 179.97438 * 14 13 12 30 30 H 1.07999 * 119.83553 * 180.02562 * 18 17 16 31 31 H 1.07995 * 119.81466 * 179.97438 * 19 18 17 32 32 H 0.97001 * 119.99714 * 359.97438 * 23 22 21 33 33 H 0.96994 * 119.99721 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4468 2.6527 0.7000 6 1 3.5469 1.4401 0.7002 7 6 2.0086 -1.2010 0.0005 8 1 3.0887 -1.2011 0.0001 9 8 1.3346 -2.3684 0.0005 10 6 2.0684 -3.5030 -0.1139 11 6 3.4345 -3.4291 -0.3478 12 6 4.1789 -4.5855 -0.4697 13 6 3.5712 -5.8247 -0.3541 14 6 2.2158 -5.9154 -0.1154 15 6 1.4520 -4.7552 0.0099 16 6 -0.0023 -4.8463 0.2665 17 7 -0.4717 -4.7266 1.5058 18 6 -1.7691 -4.8080 1.7297 19 6 -2.6510 -5.0189 0.6773 20 7 -2.2008 -5.1393 -0.5551 21 6 -0.8958 -5.0597 -0.7976 22 6 -0.3870 -5.1949 -2.1796 23 7 -1.2507 -5.3284 -3.2057 24 8 0.8100 -5.1857 -2.3902 25 1 -0.4850 0.8401 -0.0004 26 1 3.9147 -2.4661 -0.4394 27 1 5.2410 -4.5234 -0.6558 28 1 4.1615 -6.7240 -0.4505 29 1 1.7461 -6.8839 -0.0264 30 1 -2.1478 -4.7102 2.7364 31 1 -3.7115 -5.0845 0.8704 32 1 -2.2060 -5.3361 -3.0376 33 1 -0.9170 -5.4174 -4.1120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243580014.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:30 Heat of formation + Delta-G solvation = -10.175430 kcal Electronic energy + Delta-G solvation = -22130.888730 eV Core-core repulsion = 18735.685622 eV Total energy + Delta-G solvation = -3395.203108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.31605 -40.56784 -39.99773 -38.07807 -35.72752 -34.40637 -34.29931 -33.59649 -30.96454 -30.27434 -27.38003 -26.58381 -25.68747 -23.26769 -22.54262 -22.35864 -19.84158 -19.25431 -18.98600 -18.95810 -17.52801 -17.22802 -16.68520 -16.39987 -16.15960 -15.97526 -15.65063 -15.44036 -15.20250 -14.95322 -14.64406 -14.36731 -13.93416 -13.57222 -13.06563 -12.77966 -12.59110 -12.47471 -12.43708 -12.21292 -12.10906 -11.49286 -11.30254 -10.82242 -10.71296 -10.36530 -10.25546 -9.49119 -8.90769 -8.48751 -6.15067 -0.64771 0.00667 0.52522 0.79936 1.31260 1.41166 1.48532 1.71261 2.15227 2.27441 2.73762 2.81279 3.05146 3.09396 3.15884 3.45908 3.55092 3.87151 4.15627 4.17099 4.23940 4.33101 4.38523 4.62696 4.67858 5.04527 5.11822 5.18064 5.29320 5.61144 5.66542 5.76140 5.82394 5.99121 6.05597 6.23645 6.33235 6.69002 6.96172 7.24773 7.77674 8.74337 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.007303 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.048157 B = 3832.868444 C = 4670.184704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.020 4.020 3 Si 1.015 2.985 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.413 4.413 8 H 0.098 0.902 9 O -0.222 6.222 10 C 0.140 3.860 11 C -0.247 4.247 12 C -0.065 4.065 13 C -0.187 4.187 14 C -0.042 4.042 15 C -0.113 4.113 16 C 0.186 3.814 17 N -0.463 5.463 18 C 0.080 3.920 19 C 0.050 3.950 20 N -0.414 5.414 21 C 0.007 3.993 22 C 0.570 3.430 23 N -0.816 5.816 24 O -0.541 6.541 25 H 0.271 0.729 26 H 0.120 0.880 27 H 0.148 0.852 28 H 0.152 0.848 29 H 0.128 0.872 30 H 0.217 0.783 31 H 0.231 0.769 32 H 0.418 0.582 33 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 -11.266 -0.722 12.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.217 4.217 3 Si 0.834 3.166 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.177 1.177 7 C -0.489 4.489 8 H 0.115 0.885 9 O -0.128 6.128 10 C 0.089 3.911 11 C -0.266 4.266 12 C -0.083 4.083 13 C -0.205 4.205 14 C -0.061 4.061 15 C -0.116 4.116 16 C 0.049 3.951 17 N -0.178 5.178 18 C -0.083 4.083 19 C -0.114 4.114 20 N -0.131 5.131 21 C -0.132 4.132 22 C 0.352 3.648 23 N -0.381 5.381 24 O -0.417 6.417 25 H 0.080 0.920 26 H 0.138 0.862 27 H 0.166 0.834 28 H 0.170 0.830 29 H 0.145 0.855 30 H 0.233 0.767 31 H 0.247 0.753 32 H 0.250 0.750 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.857 -11.068 -0.723 11.743 hybrid contribution -0.158 1.068 -0.281 1.115 sum -4.015 -10.001 -1.004 10.823 Atomic orbital electron populations 1.70172 1.07900 1.28516 1.49024 1.26510 0.96849 1.02452 0.95882 0.84640 0.77957 0.74772 0.79190 1.18955 1.19356 1.17692 1.21794 0.92415 0.81576 1.53089 0.88510 1.83891 1.35552 1.12275 1.81124 1.19660 0.91404 0.86768 0.93303 1.21219 0.93403 1.00277 1.11690 1.21204 1.00172 0.91330 0.95637 1.20971 0.94127 0.98138 1.07261 1.20765 0.94276 0.95147 0.95887 1.17440 0.90050 0.91641 1.12428 1.20569 0.94765 0.90758 0.88981 1.68734 1.17568 1.09894 1.21555 1.24929 0.88300 0.91140 1.03930 1.24665 1.04147 0.95398 0.87188 1.68257 1.12000 1.08447 1.24412 1.22061 0.91079 1.04452 0.95562 1.17699 0.86014 0.76467 0.84623 1.43345 1.10921 1.74925 1.08942 1.90903 1.15986 1.50148 1.84625 0.92036 0.86180 0.83415 0.83004 0.85459 0.76691 0.75318 0.75006 0.75209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.33 13.67 21.62 0.30 -57.04 16 2 C -0.02 -1.14 5.49 84.84 0.47 -0.68 16 3 Si 1.02 44.35 29.55 68.60 2.03 46.38 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 6 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.41 -25.10 9.44 67.93 0.64 -24.46 16 8 H 0.10 5.48 5.30 -2.91 -0.02 5.46 16 9 O -0.22 -14.01 9.21 -20.85 -0.19 -14.20 16 10 C 0.14 7.61 6.63 22.86 0.15 7.76 16 11 C -0.25 -11.84 9.12 22.36 0.20 -11.63 16 12 C -0.07 -2.50 10.03 22.29 0.22 -2.28 16 13 C -0.19 -6.66 10.03 22.26 0.22 -6.44 16 14 C -0.04 -1.68 8.64 22.49 0.19 -1.49 16 15 C -0.11 -5.40 3.44 -19.95 -0.07 -5.47 16 16 C 0.19 8.36 5.75 42.11 0.24 8.60 16 17 N -0.46 -19.16 10.45 -183.37 -1.92 -21.08 16 18 C 0.08 2.34 11.22 84.84 0.95 3.30 16 19 C 0.05 1.27 11.22 84.87 0.95 2.22 16 20 N -0.41 -13.17 9.71 -183.59 -1.78 -14.95 16 21 C 0.01 0.29 6.78 42.10 0.29 0.58 16 22 C 0.57 22.17 8.05 86.80 0.70 22.87 16 23 N -0.82 -22.24 8.86 -175.57 -1.56 -23.80 16 24 O -0.54 -24.67 14.35 -3.87 -0.06 -24.72 16 25 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 26 H 0.12 5.77 5.72 -2.91 -0.02 5.75 16 27 H 0.15 4.39 8.06 -2.91 -0.02 4.36 16 28 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 29 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.22 4.03 8.06 -2.91 -0.02 4.01 16 31 H 0.23 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.42 9.39 8.19 -92.71 -0.76 8.63 16 33 H 0.41 9.30 8.93 -92.71 -0.83 8.47 16 Total: -1.00 -85.79 299.70 1.60 -84.19 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.39 Total: 32.34 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 5.17 Total: -7.12 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -4.96 Total: -116.86 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.25 Total: -38.92 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -85.79 1.60 -84.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580014.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.017 kcal (2) G-P(sol) polarization free energy of solvation -85.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds