Wall clock time and date at job start Tue Mar 31 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31548 * 1 3 3 Si 1.86807 * 119.99693 * 2 1 4 4 H 1.48489 * 109.47165 * 270.00039 * 3 2 1 5 5 H 1.48504 * 109.46986 * 30.00294 * 3 2 1 6 6 H 1.48500 * 109.46810 * 149.99743 * 3 2 1 7 7 C 1.38670 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99500 * 0.02562 * 7 2 1 9 9 O 1.34795 * 120.00255 * 180.02562 * 7 2 1 10 10 C 1.35629 * 116.99814 * 185.05906 * 9 7 2 11 11 C 1.38773 * 120.14721 * 354.39853 * 10 9 7 12 12 C 1.38094 * 120.05636 * 180.27706 * 11 10 9 13 13 C 1.38487 * 120.34640 * 359.72438 * 12 11 10 14 14 C 1.37954 * 120.29200 * 359.97438 * 13 12 11 15 15 C 1.39406 * 119.93260 * 0.02562 * 14 13 12 16 16 C 1.48108 * 120.17027 * 179.97438 * 15 14 13 17 17 C 1.40050 * 120.86963 * 310.00178 * 16 15 14 18 18 N 1.31880 * 119.00267 * 179.97438 * 17 16 15 19 19 C 1.32573 * 120.90605 * 0.02562 * 18 17 16 20 20 C 1.48318 * 119.04132 * 179.97438 * 19 18 17 21 21 N 1.34774 * 120.00310 * 180.02562 * 20 19 18 22 22 O 1.21505 * 119.99857 * 0.02562 * 20 19 18 23 23 N 1.32583 * 121.92596 * 0.25400 * 19 18 17 24 24 C 1.31894 * 120.89930 * 359.47760 * 23 19 18 25 25 H 0.96996 * 120.00045 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.97056 * 359.97438 * 11 10 9 27 27 H 1.08000 * 119.82709 * 179.73654 * 12 11 10 28 28 H 1.07998 * 119.85190 * 180.02562 * 13 12 11 29 29 H 1.07997 * 120.03916 * 180.02562 * 14 13 12 30 30 H 1.08004 * 120.49653 * 0.02562 * 17 16 15 31 31 H 0.97005 * 120.00163 * 180.02562 * 21 20 19 32 32 H 0.97002 * 119.99915 * 359.72359 * 21 20 19 33 33 H 1.07999 * 120.49711 * 180.27351 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4969 2.0465 -1.4000 5 1 1.4468 2.6527 0.7001 6 1 3.5470 1.4403 0.7001 7 6 2.0089 -1.2009 -0.0005 8 1 1.4689 -2.1362 -0.0014 9 8 3.3569 -1.2008 0.0000 10 6 3.9726 -2.4045 -0.1072 11 6 3.2249 -3.5735 -0.0941 12 6 3.8543 -4.7983 -0.1976 13 6 5.2319 -4.8689 -0.3205 14 6 5.9886 -3.7156 -0.3413 15 6 5.3656 -2.4729 -0.2377 16 6 6.1730 -1.2314 -0.2588 17 6 7.2890 -1.0857 0.5747 18 7 7.9819 0.0353 0.5254 19 6 7.6344 1.0150 -0.2974 20 6 8.4429 2.2583 -0.3187 21 7 8.1068 3.2667 -1.1472 22 8 9.4083 2.3676 0.4109 23 7 6.5820 0.9181 -1.0980 24 6 5.8402 -0.1723 -1.1126 25 1 -0.4850 0.8400 -0.0004 26 1 2.1503 -3.5255 0.0019 27 1 3.2691 -5.7059 -0.1827 28 1 5.7158 -5.8310 -0.4013 29 1 7.0626 -3.7754 -0.4377 30 1 7.5782 -1.8798 1.2472 31 1 8.6358 4.0797 -1.1613 32 1 7.3384 3.1778 -1.7326 33 1 4.9869 -0.2460 -1.7705 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243583876.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:41 Heat of formation + Delta-G solvation = -8.589979 kcal Electronic energy + Delta-G solvation = -21413.406441 eV Core-core repulsion = 18018.272083 eV Total energy + Delta-G solvation = -3395.134358 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.39856 -40.94171 -40.06892 -38.28585 -35.45764 -34.71964 -34.44154 -34.17980 -31.04545 -30.45759 -27.39351 -26.54240 -25.72029 -23.38853 -22.88356 -22.20666 -19.85491 -19.56356 -19.19837 -18.95356 -17.60284 -17.24408 -16.78224 -16.53316 -16.46157 -15.89994 -15.71838 -15.43498 -15.01858 -14.97911 -14.85446 -14.70312 -14.28729 -14.10459 -13.19589 -13.03534 -12.64492 -12.50699 -12.38539 -12.11744 -11.99552 -11.55185 -11.30434 -11.03400 -10.94363 -10.84182 -10.51997 -9.59438 -9.03940 -8.54326 -6.24618 -0.86586 -0.08140 0.47355 0.67148 1.27225 1.28543 1.43158 1.46192 1.89437 2.19749 2.63762 2.75699 2.81229 2.98814 3.07703 3.35061 3.38711 3.62004 3.90024 3.99404 4.20101 4.29342 4.54696 4.60238 4.74821 4.87374 5.07048 5.14296 5.38289 5.55398 5.66314 5.67604 5.70975 5.76888 5.87017 6.09502 6.19075 6.73202 6.80914 7.08912 7.52593 8.56902 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.012854 B = 0.007142 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.789294 B = 3919.506231 C = 5871.548488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.022 3.978 3 Si 0.952 3.048 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.391 4.391 8 H 0.089 0.911 9 O -0.232 6.232 10 C 0.144 3.856 11 C -0.237 4.237 12 C -0.060 4.060 13 C -0.178 4.178 14 C -0.046 4.046 15 C -0.139 4.139 16 C -0.086 4.086 17 C 0.151 3.849 18 N -0.484 5.484 19 C 0.237 3.763 20 C 0.594 3.406 21 N -0.807 5.807 22 O -0.550 6.550 23 N -0.489 5.489 24 C 0.148 3.852 25 H 0.284 0.716 26 H 0.114 0.886 27 H 0.143 0.857 28 H 0.158 0.842 29 H 0.157 0.843 30 H 0.210 0.790 31 H 0.423 0.577 32 H 0.421 0.579 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.665 -3.285 -4.097 13.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.106 0.894 9 O -0.139 6.139 10 C 0.094 3.906 11 C -0.256 4.256 12 C -0.078 4.078 13 C -0.197 4.197 14 C -0.064 4.064 15 C -0.141 4.141 16 C -0.091 4.091 17 C -0.016 4.016 18 N -0.198 5.198 19 C -0.032 4.032 20 C 0.375 3.625 21 N -0.373 5.373 22 O -0.426 6.426 23 N -0.205 5.205 24 C -0.018 4.018 25 H 0.094 0.906 26 H 0.132 0.868 27 H 0.161 0.839 28 H 0.175 0.825 29 H 0.175 0.825 30 H 0.226 0.774 31 H 0.257 0.743 32 H 0.254 0.746 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 13.707 -2.108 -3.567 14.320 hybrid contribution -1.468 0.199 -0.149 1.489 sum 12.239 -1.909 -3.716 12.932 Atomic orbital electron populations 1.69695 1.06693 1.29456 1.49811 1.25055 0.95598 1.01346 0.95785 0.85482 0.78387 0.78728 0.79802 1.17851 1.20072 1.20010 1.20682 0.77885 0.96077 1.52118 0.89351 1.83491 1.21279 1.27156 1.81961 1.19532 0.91665 0.85475 0.93946 1.21295 1.00507 0.92979 1.10866 1.21338 0.95690 0.96405 0.94351 1.21182 0.93117 0.99193 1.06167 1.21218 1.00706 0.89312 0.95156 1.17719 0.88434 0.92740 1.15252 1.20746 0.96154 0.95850 0.96304 1.23972 0.88903 0.94278 0.94424 1.68155 1.30934 1.01264 1.19440 1.22879 0.92538 0.95565 0.92181 1.17208 0.82575 0.82240 0.80517 1.43371 1.34711 1.17785 1.41420 1.90811 1.28476 1.81049 1.42262 1.68159 1.04925 1.25700 1.21702 1.23528 0.96084 0.87132 0.95096 0.90595 0.86841 0.83878 0.82456 0.82511 0.77375 0.74295 0.74646 0.81046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.10 13.96 21.62 0.30 -51.80 16 2 C 0.02 1.18 5.49 84.84 0.47 1.65 16 3 Si 0.95 43.72 28.62 68.60 1.96 45.68 16 4 H -0.25 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.39 -21.05 9.95 67.92 0.68 -20.37 16 8 H 0.09 4.96 5.44 -2.91 -0.02 4.95 16 9 O -0.23 -11.16 7.04 -21.04 -0.15 -11.31 16 10 C 0.14 5.81 6.58 22.84 0.15 5.96 16 11 C -0.24 -8.91 9.16 22.36 0.20 -8.70 16 12 C -0.06 -1.66 10.03 22.29 0.22 -1.43 16 13 C -0.18 -4.03 10.03 22.26 0.22 -3.80 16 14 C -0.05 -1.11 9.55 22.48 0.21 -0.89 16 15 C -0.14 -4.47 5.53 -19.93 -0.11 -4.58 16 16 C -0.09 -2.76 5.30 -19.78 -0.10 -2.87 16 17 C 0.15 4.38 10.85 85.13 0.92 5.31 16 18 N -0.48 -16.32 10.10 -188.30 -1.90 -18.22 16 19 C 0.24 7.96 7.59 137.55 1.04 9.00 16 20 C 0.59 18.27 8.12 86.93 0.71 18.98 16 21 N -0.81 -16.66 8.86 -175.27 -1.55 -18.21 16 22 O -0.55 -20.21 17.69 -3.73 -0.07 -20.27 16 23 N -0.49 -16.07 9.54 -188.30 -1.80 -17.87 16 24 C 0.15 5.05 10.11 85.12 0.86 5.91 16 25 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 26 H 0.11 4.77 5.64 -2.91 -0.02 4.76 16 27 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 28 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 29 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 30 H 0.21 4.40 8.06 -2.91 -0.02 4.38 16 31 H 0.42 6.30 8.93 -92.70 -0.83 5.48 16 32 H 0.42 7.72 8.12 -92.71 -0.75 6.96 16 33 H 0.17 5.95 7.79 -2.91 -0.02 5.93 16 Total: -1.00 -69.14 301.88 1.90 -67.25 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -0.38 Total: 20.59 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 5.48 Total: 4.17 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -4.95 Total: -106.10 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.21 Total: -31.58 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.96 Total: 45.68 kcal Total: -69.14 1.90 -67.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243583876.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.658 kcal (2) G-P(sol) polarization free energy of solvation -69.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds