Wall clock time and date at job start Tue Mar 31 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31531 * 1 3 3 Si 1.86798 * 120.00470 * 2 1 4 4 H 1.48504 * 109.47406 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46964 * 300.00189 * 3 2 1 6 6 H 1.48500 * 109.47182 * 60.00061 * 3 2 1 7 7 C 1.38680 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99853 * 179.97438 * 7 2 1 9 9 O 1.34814 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.35645 * 116.99993 * 185.60077 * 9 7 2 11 11 C 1.39059 * 119.93766 * 6.14651 * 10 9 7 12 12 C 1.37752 * 120.06437 * 180.02562 * 11 10 9 13 13 C 1.39596 * 119.93682 * 359.97438 * 12 11 10 14 14 C 1.48006 * 120.06698 * 180.02562 * 13 12 11 15 15 N 1.33046 * 120.18640 * 234.69698 * 14 13 12 16 16 C 1.31903 * 119.97249 * 180.02562 * 15 14 13 17 17 C 1.38913 * 120.34150 * 0.02562 * 16 15 14 18 18 N 1.31770 * 120.36721 * 0.25230 * 17 16 15 19 19 C 1.32961 * 120.02329 * 359.45135 * 18 17 16 20 20 C 1.47895 * 120.16945 * 180.27318 * 19 18 17 21 21 N 1.34769 * 120.00016 * 6.74489 * 20 19 18 22 22 O 1.21549 * 119.99964 * 186.74870 * 20 19 18 23 23 C 1.39593 * 119.86866 * 0.27724 * 13 12 11 24 24 C 1.37757 * 119.93930 * 359.42250 * 23 13 12 25 25 H 0.97008 * 119.99650 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.96531 * 359.97438 * 11 10 9 27 27 H 1.08003 * 120.03667 * 180.02562 * 12 11 10 28 28 H 1.08002 * 119.83532 * 179.97438 * 16 15 14 29 29 H 1.07993 * 119.82053 * 179.97438 * 17 16 15 30 30 H 0.97003 * 120.00348 * 0.02562 * 21 20 19 31 31 H 0.97002 * 120.00315 * 180.02562 * 21 20 19 32 32 H 1.08004 * 120.02860 * 179.72242 * 23 13 12 33 33 H 1.07997 * 119.97348 * 180.27615 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6176 0.0000 4 1 3.7095 1.3462 -0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0087 -1.2010 0.0005 8 1 3.0887 -1.2011 0.0001 9 8 1.3346 -2.3685 0.0005 10 6 2.0683 -3.5033 0.1190 11 6 3.4353 -3.4236 0.3614 12 6 4.1830 -4.5743 0.4817 13 6 3.5671 -5.8212 0.3605 14 6 4.3676 -7.0594 0.4898 15 7 4.3458 -7.9740 -0.4762 16 6 5.0605 -9.0761 -0.3563 17 6 5.8375 -9.2891 0.7753 18 7 5.8647 -8.3947 1.7426 19 6 5.1546 -7.2758 1.6343 20 6 5.1876 -6.2671 2.7154 21 7 6.0399 -6.4145 3.7489 22 8 4.4459 -5.3051 2.6718 23 6 2.1956 -5.8979 0.1120 24 6 1.4518 -4.7439 -0.0012 25 1 -0.4850 0.8401 0.0004 26 1 3.9113 -2.4586 0.4546 27 1 5.2446 -4.5120 0.6703 28 1 5.0408 -9.8173 -1.1417 29 1 6.4190 -10.1946 0.8648 30 1 6.6321 -7.1820 3.7835 31 1 6.0613 -5.7531 4.4581 32 1 1.7172 -6.8612 0.0134 33 1 0.3899 -4.8027 -0.1890 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586594.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:37 Heat of formation + Delta-G solvation = -6.534547 kcal Electronic energy + Delta-G solvation = -21266.968006 eV Core-core repulsion = 17871.922778 eV Total energy + Delta-G solvation = -3395.045228 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.37427 -40.67631 -40.05304 -38.24495 -35.65918 -34.42403 -34.35737 -33.17864 -31.85212 -29.96462 -27.46797 -26.60141 -25.35837 -23.61813 -22.54131 -22.26619 -19.90969 -19.28613 -18.97833 -18.83470 -17.80230 -17.22319 -16.68467 -16.30864 -16.13587 -15.98947 -15.58221 -15.52944 -15.34648 -14.90317 -14.49859 -14.37060 -14.07126 -13.58009 -13.13164 -12.82568 -12.72642 -12.64045 -12.46826 -12.26475 -12.10258 -11.41539 -11.27099 -10.85797 -10.69431 -10.38270 -10.20792 -9.68127 -8.79989 -8.49281 -6.16344 -0.74685 -0.08632 0.63817 0.71234 1.34497 1.43156 1.53425 1.71940 2.17025 2.27002 2.68990 2.79722 3.00191 3.09189 3.14019 3.45479 3.49231 3.83883 4.01212 4.12444 4.16202 4.31419 4.42810 4.53041 4.70149 4.95752 5.09280 5.21876 5.26139 5.52035 5.63678 5.67235 5.83290 6.00564 6.03747 6.13937 6.35109 6.68328 6.95085 7.26727 7.73819 8.73976 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.004131 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.435248 B = 6776.279581 C = 7369.045167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.020 4.020 3 Si 1.020 2.980 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.223 6.223 10 C 0.136 3.864 11 C -0.246 4.246 12 C 0.017 3.983 13 C -0.138 4.138 14 C 0.183 3.817 15 N -0.463 5.463 16 C 0.092 3.908 17 C 0.052 3.948 18 N -0.412 5.412 19 C 0.007 3.993 20 C 0.564 3.436 21 N -0.816 5.816 22 O -0.544 6.544 23 C -0.030 4.030 24 C -0.213 4.213 25 H 0.274 0.726 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.221 0.779 29 H 0.229 0.771 30 H 0.419 0.581 31 H 0.414 0.586 32 H 0.139 0.861 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.461 -19.862 3.410 26.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.218 4.218 3 Si 0.839 3.161 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.129 6.129 10 C 0.084 3.916 11 C -0.265 4.265 12 C -0.002 4.002 13 C -0.140 4.140 14 C 0.047 3.953 15 N -0.178 5.178 16 C -0.072 4.072 17 C -0.113 4.113 18 N -0.129 5.129 19 C -0.132 4.132 20 C 0.347 3.653 21 N -0.381 5.381 22 O -0.420 6.420 23 C -0.049 4.049 24 C -0.232 4.232 25 H 0.083 0.917 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.238 0.762 29 H 0.245 0.755 30 H 0.251 0.749 31 H 0.247 0.753 32 H 0.156 0.844 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.495 -19.064 3.263 24.783 hybrid contribution 0.201 0.859 0.370 0.957 sum 15.696 -18.205 3.632 24.310 Atomic orbital electron populations 1.70181 1.08023 1.28887 1.48375 1.26616 0.96882 1.02707 0.95609 0.84520 0.78168 0.74694 0.78735 1.17643 1.18974 1.19183 1.21883 0.92526 0.81403 1.53293 0.88254 1.83919 1.35946 1.12644 1.80399 1.19958 0.91300 0.87857 0.92481 1.20973 0.93755 0.99297 1.12491 1.20489 0.98340 0.90473 0.90936 1.17863 0.93244 0.90304 1.12605 1.20461 0.92268 0.93048 0.89528 1.68769 1.19697 1.02425 1.26871 1.24993 0.89393 0.93716 0.99115 1.24708 0.97752 0.99526 0.89265 1.68315 1.15404 0.99987 1.29201 1.21845 0.99666 0.95787 0.95894 1.17855 0.80784 0.84266 0.82434 1.43466 1.40484 1.30236 1.23894 1.91042 1.41895 1.31807 1.77265 1.20742 0.92321 0.97011 0.94821 1.20229 1.00402 0.89769 1.12793 0.91671 0.86263 0.86683 0.76226 0.75495 0.74856 0.75348 0.84372 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.52 13.67 21.62 0.30 -57.23 16 2 C -0.02 -1.18 5.49 84.84 0.47 -0.72 16 3 Si 1.02 44.19 29.55 68.60 2.03 46.21 16 4 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.42 -25.24 9.43 67.93 0.64 -24.60 16 8 H 0.10 5.63 5.29 -2.91 -0.02 5.61 16 9 O -0.22 -14.12 9.75 -21.42 -0.21 -14.33 16 10 C 0.14 7.35 6.65 22.66 0.15 7.50 16 11 C -0.25 -12.10 9.11 22.35 0.20 -11.89 16 12 C 0.02 0.70 6.62 22.48 0.15 0.85 16 13 C -0.14 -5.37 4.50 -20.03 -0.09 -5.46 16 14 C 0.18 5.69 6.27 42.12 0.26 5.96 16 15 N -0.46 -11.99 10.42 -183.34 -1.91 -13.90 16 16 C 0.09 1.30 11.22 84.84 0.95 2.25 16 17 C 0.05 0.60 11.22 84.86 0.95 1.55 16 18 N -0.41 -7.74 9.72 -183.59 -1.79 -9.52 16 19 C 0.01 0.18 6.75 42.10 0.28 0.47 16 20 C 0.56 16.19 7.64 86.80 0.66 16.85 16 21 N -0.82 -15.03 8.86 -175.58 -1.56 -16.58 16 22 O -0.54 -20.93 12.86 -3.87 -0.05 -20.98 16 23 C -0.03 -1.21 9.75 22.48 0.22 -0.99 16 24 C -0.21 -10.05 9.98 22.35 0.22 -9.82 16 25 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 26 H 0.12 5.92 5.71 -2.91 -0.02 5.91 16 27 H 0.12 4.37 7.48 -2.91 -0.02 4.34 16 28 H 0.22 0.95 8.06 -2.91 -0.02 0.93 16 29 H 0.23 0.15 8.06 -2.91 -0.02 0.12 16 30 H 0.42 5.44 8.20 -92.71 -0.76 4.68 16 31 H 0.41 6.48 8.93 -92.71 -0.83 5.65 16 32 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 33 H 0.12 5.50 8.06 -2.91 -0.02 5.47 16 Total: -1.00 -83.68 296.96 1.50 -82.18 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.39 Total: 22.21 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 5.08 Total: -18.06 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -4.96 Total: -97.24 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.26 Total: -35.30 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -83.68 1.50 -82.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586594.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.641 kcal (2) G-P(sol) polarization free energy of solvation -83.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds