Wall clock time and date at job start Tue Mar 31 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31537 * 1 3 3 Si 1.86807 * 119.99918 * 2 1 4 4 H 1.48506 * 109.46890 * 269.99452 * 3 2 1 5 5 H 1.48499 * 109.47099 * 29.99632 * 3 2 1 6 6 H 1.48495 * 109.47005 * 149.99943 * 3 2 1 7 7 C 1.38680 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00180 * 180.02562 * 7 2 1 9 9 O 1.34805 * 119.99849 * 0.02562 * 7 2 1 10 10 C 1.35644 * 117.00105 * 185.05765 * 9 7 2 11 11 C 1.39063 * 119.93942 * 354.45055 * 10 9 7 12 12 C 1.37763 * 120.06288 * 179.74755 * 11 10 9 13 13 C 1.39575 * 119.93548 * 0.25222 * 12 11 10 14 14 C 1.48082 * 120.05442 * 179.97438 * 13 12 11 15 15 C 1.39824 * 120.07226 * 180.02562 * 14 13 12 16 16 C 1.38435 * 118.00117 * 179.97438 * 15 14 13 17 17 C 1.39945 * 118.01460 * 359.97438 * 16 15 14 18 18 C 1.47964 * 120.06740 * 179.97438 * 17 16 15 19 19 N 1.34783 * 119.99827 * 179.97438 * 18 17 16 20 20 O 1.21537 * 120.00217 * 0.02562 * 18 17 16 21 21 N 1.32854 * 119.86246 * 359.97438 * 17 16 15 22 22 N 1.28357 * 122.14657 * 359.73692 * 21 17 16 23 23 C 1.39566 * 119.88052 * 359.97438 * 13 12 11 24 24 C 1.37768 * 119.93793 * 0.02562 * 23 13 12 25 25 H 0.96998 * 119.99600 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.96413 * 0.02562 * 11 10 9 27 27 H 1.08002 * 120.03023 * 180.27598 * 12 11 10 28 28 H 1.08001 * 121.00062 * 359.95098 * 15 14 13 29 29 H 1.08000 * 120.99179 * 180.02562 * 16 15 14 30 30 H 0.96997 * 119.99767 * 0.02562 * 19 18 17 31 31 H 0.97003 * 119.99519 * 179.97438 * 19 18 17 32 32 H 1.07996 * 120.02933 * 179.97438 * 23 13 12 33 33 H 1.08000 * 119.97163 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5469 1.4402 0.7000 7 6 2.0088 -1.2010 0.0005 8 1 3.0888 -1.2010 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0695 -3.5037 0.1076 11 6 3.4584 -3.4354 0.0946 12 6 4.2070 -4.5862 0.2084 13 6 3.5702 -5.8221 0.3316 14 6 4.3723 -7.0608 0.4535 15 6 3.7347 -8.2992 0.5764 16 6 4.5262 -9.4295 0.6871 17 6 5.9157 -9.2635 0.6687 18 6 6.8045 -10.4407 0.7844 19 7 8.1425 -10.2793 0.7659 20 8 6.3282 -11.5534 0.8952 21 7 6.4349 -8.0467 0.5470 22 7 5.7015 -6.9989 0.4389 23 6 2.1761 -5.8882 0.3396 24 6 1.4324 -4.7341 0.2255 25 1 -0.4849 0.8401 -0.0004 26 1 3.9505 -2.4787 -0.0003 27 1 5.2857 -4.5321 0.2027 28 1 2.6572 -8.3716 0.5851 29 1 4.0845 -10.4103 0.7840 30 1 8.5227 -9.3913 0.6772 31 1 8.7252 -11.0510 0.8422 32 1 1.6809 -6.8432 0.4344 33 1 0.3536 -4.7847 0.2312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587697.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:21 Heat of formation + Delta-G solvation = -7.856041 kcal Electronic energy + Delta-G solvation = -20268.969215 eV Core-core repulsion = 16873.866683 eV Total energy + Delta-G solvation = -3395.102532 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.23810 -40.83517 -40.18177 -38.34902 -35.12593 -34.48197 -34.24528 -33.70100 -31.93569 -30.18081 -27.60711 -26.38609 -25.63822 -23.50624 -22.82004 -22.23981 -19.95697 -19.34161 -19.04917 -18.74782 -17.69812 -17.39218 -16.58350 -16.38171 -16.15925 -15.95853 -15.65260 -15.31866 -15.29762 -15.10409 -14.61240 -14.33587 -14.03619 -13.59152 -13.28454 -13.26258 -12.70093 -12.45559 -12.41373 -12.12998 -11.42492 -11.36814 -11.32458 -11.28167 -10.80972 -10.79080 -10.70937 -9.90367 -8.90432 -8.53176 -6.19225 -0.88460 -0.25969 0.56139 0.60171 1.36903 1.43602 1.53564 1.62479 2.15200 2.19657 2.51099 2.80403 2.86554 3.15622 3.24698 3.38977 3.54769 3.70887 3.91406 3.96902 4.09194 4.16677 4.43868 4.61198 4.66003 4.81212 4.90496 5.06740 5.11047 5.21890 5.48103 5.62013 5.62716 5.74538 5.96349 6.03359 6.21909 6.91492 7.10651 7.47280 7.66356 8.68521 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.044242 B = 0.002887 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.734019 B = 9697.799070 C =10315.328320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.016 4.016 3 Si 1.017 2.983 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.416 4.416 8 H 0.106 0.894 9 O -0.215 6.215 10 C 0.139 3.861 11 C -0.250 4.250 12 C -0.021 4.021 13 C -0.158 4.158 14 C 0.156 3.844 15 C -0.117 4.117 16 C -0.054 4.054 17 C -0.018 4.018 18 C 0.588 3.412 19 N -0.815 5.815 20 O -0.566 6.566 21 N -0.212 5.212 22 N -0.274 5.274 23 C -0.025 4.025 24 C -0.203 4.203 25 H 0.276 0.724 26 H 0.125 0.875 27 H 0.136 0.864 28 H 0.193 0.807 29 H 0.183 0.817 30 H 0.420 0.580 31 H 0.419 0.581 32 H 0.170 0.830 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.205 -16.238 1.407 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.215 4.215 3 Si 0.836 3.164 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.492 4.492 8 H 0.123 0.877 9 O -0.119 6.119 10 C 0.086 3.914 11 C -0.270 4.270 12 C -0.040 4.040 13 C -0.161 4.161 14 C 0.016 3.984 15 C -0.146 4.146 16 C -0.082 4.082 17 C -0.166 4.166 18 C 0.370 3.630 19 N -0.379 5.379 20 O -0.444 6.444 21 N -0.058 5.058 22 N -0.119 5.119 23 C -0.043 4.043 24 C -0.222 4.222 25 H 0.085 0.915 26 H 0.143 0.857 27 H 0.154 0.846 28 H 0.210 0.790 29 H 0.200 0.800 30 H 0.252 0.748 31 H 0.252 0.748 32 H 0.187 0.813 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.726 -15.772 1.355 19.700 hybrid contribution -0.623 0.400 0.004 0.740 sum 11.103 -15.372 1.359 19.011 Atomic orbital electron populations 1.70150 1.07995 1.29170 1.47466 1.26579 0.96809 1.02719 0.95421 0.84607 0.77913 0.74561 0.79336 1.18767 1.19549 1.17644 1.21897 0.92749 0.81187 1.53357 0.87685 1.83910 1.36164 1.12735 1.79081 1.20167 0.91347 0.88165 0.91756 1.21196 0.93171 0.99905 1.12694 1.21094 1.00026 0.90637 0.92252 1.18033 0.92654 0.90415 1.14959 1.21534 0.91619 0.94269 0.90982 1.22742 1.04289 0.90211 0.97313 1.22577 0.92085 1.01952 0.91621 1.22827 0.94917 0.94341 1.04471 1.17499 0.83465 0.86247 0.75797 1.43524 1.05592 1.15077 1.73662 1.90829 1.76327 1.25466 1.51780 1.73052 1.31174 0.95416 1.06159 1.73269 1.04873 1.20768 1.13037 1.21120 0.91464 0.98204 0.93554 1.20421 1.00663 0.89724 1.11375 0.91526 0.85734 0.84610 0.79006 0.79977 0.74814 0.74773 0.81264 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.26 13.67 21.62 0.30 -52.96 16 2 C -0.02 -0.87 5.49 84.84 0.47 -0.40 16 3 Si 1.02 40.85 29.55 68.60 2.03 42.88 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.42 -22.94 9.48 67.93 0.64 -22.29 16 8 H 0.11 5.31 5.19 -2.91 -0.02 5.30 16 9 O -0.21 -12.05 9.75 -21.32 -0.21 -12.26 16 10 C 0.14 6.35 6.65 22.66 0.15 6.50 16 11 C -0.25 -10.37 9.15 22.36 0.20 -10.16 16 12 C -0.02 -0.74 9.57 22.48 0.22 -0.52 16 13 C -0.16 -4.80 5.88 -20.02 -0.12 -4.92 16 14 C 0.16 4.12 6.81 41.95 0.29 4.41 16 15 C -0.12 -2.23 9.53 22.70 0.22 -2.02 16 16 C -0.05 -1.02 9.71 22.73 0.22 -0.80 16 17 C -0.02 -0.41 6.83 41.98 0.29 -0.12 16 18 C 0.59 12.12 8.08 86.82 0.70 12.82 16 19 N -0.81 -10.81 8.87 -175.52 -1.56 -12.36 16 20 O -0.57 -14.54 17.22 -3.83 -0.07 -14.61 16 21 N -0.21 -5.37 10.73 -48.45 -0.52 -5.89 16 22 N -0.27 -7.92 10.62 -48.33 -0.51 -8.44 16 23 C -0.02 -0.70 9.42 22.48 0.21 -0.48 16 24 C -0.20 -7.51 9.98 22.36 0.22 -7.29 16 25 H 0.28 14.73 8.31 -92.71 -0.77 13.96 16 26 H 0.12 5.26 5.62 -2.91 -0.02 5.24 16 27 H 0.14 4.37 7.55 -2.91 -0.02 4.35 16 28 H 0.19 2.21 6.27 -2.91 -0.02 2.19 16 29 H 0.18 2.59 7.71 -2.91 -0.02 2.57 16 30 H 0.42 4.75 8.17 -92.71 -0.76 4.00 16 31 H 0.42 3.65 8.93 -92.71 -0.83 2.82 16 32 H 0.17 3.04 6.22 -2.91 -0.02 3.02 16 33 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -71.60 300.35 2.80 -68.80 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.37 Total: 20.12 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 3.71 Total: -25.28 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -2.29 Total: -79.65 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.27 Total: -26.86 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -71.60 2.80 -68.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587697.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.947 kcal (2) G-P(sol) polarization free energy of solvation -71.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds