Wall clock time and date at job start Tue Mar 31 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31538 * 1 3 3 Si 1.86799 * 120.00080 * 2 1 4 4 H 1.48504 * 109.47184 * 270.00011 * 3 2 1 5 5 H 1.48496 * 109.47358 * 30.00193 * 3 2 1 6 6 H 1.48501 * 109.46837 * 150.00562 * 3 2 1 7 7 C 1.38677 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00265 * 180.02562 * 7 2 1 9 9 O 1.34812 * 120.00303 * 359.97438 * 7 2 1 10 10 C 1.35649 * 117.00256 * 185.05635 * 9 7 2 11 11 C 1.39041 * 119.94375 * 354.46138 * 10 9 7 12 12 C 1.37774 * 120.06112 * 179.97438 * 11 10 9 13 13 C 1.39531 * 119.93876 * 359.97438 * 12 11 10 14 14 C 1.48162 * 120.05692 * 180.02562 * 13 12 11 15 15 C 1.40023 * 120.53593 * 180.02562 * 14 13 12 16 16 C 1.39216 * 118.14762 * 180.02562 * 15 14 13 17 17 C 1.48430 * 120.50325 * 180.02562 * 16 15 14 18 18 N 1.34775 * 119.99806 * 179.97438 * 17 16 15 19 19 O 1.21483 * 120.00160 * 359.97379 * 17 16 15 20 20 N 1.33248 * 118.99401 * 359.97438 * 16 15 14 21 21 C 1.31592 * 120.98273 * 0.02562 * 20 16 15 22 22 N 1.31775 * 122.05282 * 0.02562 * 21 20 16 23 23 C 1.39531 * 119.88895 * 0.28522 * 13 12 11 24 24 C 1.37783 * 119.93373 * 359.41279 * 23 13 12 25 25 H 0.96997 * 119.99613 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.96827 * 359.96509 * 11 10 9 27 27 H 1.08003 * 120.03362 * 180.02562 * 12 11 10 28 28 H 1.07997 * 120.93050 * 359.97438 * 15 14 13 29 29 H 0.97007 * 120.00349 * 359.97438 * 18 17 16 30 30 H 0.96996 * 120.00049 * 179.97438 * 18 17 16 31 31 H 1.07992 * 118.97371 * 179.97438 * 21 20 16 32 32 H 1.07996 * 120.03273 * 179.72452 * 23 13 12 33 33 H 1.08003 * 119.97047 * 180.27799 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4969 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4400 0.6999 7 6 2.0087 -1.2010 -0.0005 8 1 3.0888 -1.2011 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0694 -3.5039 0.1054 11 6 3.4581 -3.4357 0.0916 12 6 4.2067 -4.5873 0.1996 13 6 3.5700 -5.8227 0.3235 14 6 4.3725 -7.0626 0.4404 15 6 3.7441 -8.3077 0.5647 16 6 4.5462 -9.4405 0.6717 17 6 3.9351 -10.7866 0.8052 18 7 4.7214 -11.8764 0.9076 19 8 2.7263 -10.9059 0.8222 20 7 5.8709 -9.2981 0.6515 21 6 6.4228 -8.1094 0.5330 22 7 5.7021 -7.0110 0.4300 23 6 2.1763 -5.8889 0.3317 24 6 1.4325 -4.7336 0.2297 25 1 -0.4849 0.8401 0.0004 26 1 3.9503 -2.4791 -0.0041 27 1 5.2854 -4.5337 0.1892 28 1 2.6671 -8.3870 0.5781 29 1 5.6867 -11.7812 0.8937 30 1 4.3221 -12.7560 0.9952 31 1 7.4998 -8.0315 0.5206 32 1 1.6812 -6.8443 0.4231 33 1 0.3537 -4.7838 0.2405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:26 Heat of formation + Delta-G solvation = 7.957635 kcal Electronic energy + Delta-G solvation = -20399.013609 eV Core-core repulsion = 17004.596809 eV Total energy + Delta-G solvation = -3394.416800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15439 -39.36915 -39.01752 -36.79543 -34.33141 -33.34222 -32.63736 -32.19644 -30.38899 -28.83512 -25.80674 -25.43425 -24.23318 -22.16450 -21.76307 -20.53161 -18.51843 -18.24008 -17.71914 -17.21784 -16.50386 -15.60924 -15.53427 -15.44802 -14.69905 -14.53679 -14.41022 -14.27316 -13.98322 -13.83454 -13.51322 -12.92639 -12.61531 -11.88201 -11.86086 -11.29865 -11.18746 -11.13614 -10.73178 -10.65461 -10.54890 -10.51837 -10.00297 -9.75876 -9.56304 -9.29522 -8.98046 -8.39565 -7.32253 -6.68705 -4.23150 0.42074 0.73551 2.10583 2.16720 2.71378 3.02572 3.03631 3.03950 3.08588 3.79535 3.84938 3.89891 4.06324 4.48175 4.53765 4.85300 4.89531 5.00412 5.10309 5.38259 5.51173 5.64090 5.69079 6.01833 6.21343 6.25973 6.41451 6.46601 6.70434 6.77086 6.86760 7.03016 7.06835 7.20331 7.24091 7.57944 7.76831 7.88808 8.06105 8.75808 9.41570 10.47582 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.039313 B = 0.003089 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.067243 B = 9062.393484 C = 9757.905089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.042 3.958 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.392 4.392 8 H 0.099 0.901 9 O -0.159 6.159 10 C 0.171 3.829 11 C -0.246 4.246 12 C -0.010 4.010 13 C -0.185 4.185 14 C 0.261 3.739 15 C -0.178 4.178 16 C 0.121 3.879 17 C 0.580 3.420 18 N -0.834 5.834 19 O -0.528 6.528 20 N -0.528 5.528 21 C 0.302 3.698 22 N -0.517 5.517 23 C -0.037 4.037 24 C -0.196 4.196 25 H 0.275 0.725 26 H 0.133 0.867 27 H 0.124 0.876 28 H 0.157 0.843 29 H 0.412 0.588 30 H 0.405 0.595 31 H 0.198 0.802 32 H 0.120 0.880 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.767 -15.074 1.205 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.165 4.165 3 Si 0.770 3.230 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.467 4.467 8 H 0.116 0.884 9 O -0.059 6.059 10 C 0.114 3.886 11 C -0.266 4.266 12 C -0.030 4.030 13 C -0.188 4.188 14 C 0.118 3.882 15 C -0.202 4.202 16 C -0.023 4.023 17 C 0.362 3.638 18 N -0.398 5.398 19 O -0.403 6.403 20 N -0.247 5.247 21 C 0.013 3.987 22 N -0.233 5.233 23 C -0.057 4.057 24 C -0.216 4.216 25 H 0.085 0.915 26 H 0.151 0.849 27 H 0.142 0.858 28 H 0.175 0.825 29 H 0.243 0.757 30 H 0.236 0.764 31 H 0.215 0.785 32 H 0.138 0.862 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.480 -14.707 1.174 18.097 hybrid contribution 0.039 0.395 0.026 0.398 sum 10.519 -14.312 1.200 17.802 Atomic orbital electron populations 1.70027 1.06169 1.28390 1.43600 1.25418 0.95923 0.99228 0.95922 0.85630 0.79029 0.79399 0.78990 1.19582 1.20016 1.18868 1.21514 0.92196 0.80497 1.52504 0.88382 1.83928 1.35043 1.11846 1.75086 1.19583 0.90388 0.87847 0.90794 1.21136 0.93543 0.99165 1.12716 1.20890 0.99357 0.90622 0.92089 1.17791 0.91953 0.90224 1.18829 1.20317 0.88915 0.92505 0.86438 1.22867 1.03369 0.92332 1.01603 1.21222 0.90104 0.94090 0.96908 1.17867 0.86045 0.83899 0.75979 1.43602 1.11673 1.08769 1.75720 1.90848 1.13638 1.86156 1.49656 1.68210 1.11230 1.28936 1.16356 1.24791 1.00919 0.82266 0.90768 1.68403 1.06965 1.32902 1.15028 1.20729 0.92043 0.97375 0.95524 1.20119 0.99891 0.89855 1.11719 0.91503 0.84937 0.85843 0.82507 0.75724 0.76350 0.78544 0.86198 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.56 13.67 55.48 0.76 -22.80 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.95 19.29 29.55 -169.99 -5.02 14.27 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.39 -10.27 9.48 30.89 0.29 -9.98 16 8 H 0.10 2.36 5.19 -52.48 -0.27 2.09 16 9 O -0.16 -4.26 9.75 0.41 0.00 -4.26 16 10 C 0.17 3.89 6.65 -38.98 -0.26 3.63 16 11 C -0.25 -5.07 9.15 -39.45 -0.36 -5.43 16 12 C -0.01 -0.19 9.58 -39.27 -0.38 -0.56 16 13 C -0.19 -3.24 5.88 -104.86 -0.62 -3.86 16 14 C 0.26 4.13 6.77 -82.59 -0.56 3.57 16 15 C -0.18 -2.58 9.07 -38.55 -0.35 -2.93 16 16 C 0.12 1.61 6.79 -82.69 -0.56 1.04 16 17 C 0.58 7.15 8.10 -12.06 -0.10 7.05 16 18 N -0.83 -6.60 8.87 30.66 0.27 -6.32 16 19 O -0.53 -8.14 17.25 5.38 0.09 -8.05 16 20 N -0.53 -6.31 9.69 -11.21 -0.11 -6.42 16 21 C 0.30 3.58 12.27 -92.34 -1.13 2.45 16 22 N -0.52 -7.62 9.57 -11.13 -0.11 -7.72 16 23 C -0.04 -0.64 9.43 -39.27 -0.37 -1.01 16 24 C -0.20 -3.90 9.98 -39.45 -0.39 -4.29 16 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.13 2.69 5.62 -52.48 -0.30 2.39 16 27 H 0.12 2.05 7.57 -52.48 -0.40 1.65 16 28 H 0.16 2.18 6.00 -52.49 -0.31 1.87 16 29 H 0.41 2.61 8.21 -40.82 -0.34 2.27 16 30 H 0.41 2.36 8.93 -40.82 -0.36 2.00 16 31 H 0.20 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.12 1.73 6.27 -52.49 -0.33 1.40 16 33 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 LS Contribution 300.53 15.07 4.53 4.53 Total: -1.00 -30.90 300.53 -6.75 -37.65 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -2.29 Total: 8.45 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -4.88 Total: -9.33 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.82 Total: -43.27 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.10 Total: -12.30 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.90 -6.75 -37.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.605 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds