Wall clock time and date at job start Tue Mar 31 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86798 * 119.99541 * 2 1 4 4 H 1.48496 * 109.47418 * 270.00170 * 3 2 1 5 5 H 1.48506 * 109.47464 * 30.00791 * 3 2 1 6 6 H 1.48502 * 109.47240 * 150.00342 * 3 2 1 7 7 C 1.38665 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00572 * 179.97438 * 7 2 1 9 9 O 1.34824 * 119.99821 * 359.97438 * 7 2 1 10 10 C 1.35658 * 117.00003 * 185.05403 * 9 7 2 11 11 C 1.39040 * 119.94358 * 354.44989 * 10 9 7 12 12 C 1.37793 * 120.05171 * 179.97438 * 11 10 9 13 13 C 1.39491 * 119.94850 * 359.97438 * 12 11 10 14 14 C 1.48202 * 120.05701 * 180.02562 * 13 12 11 15 15 N 1.32754 * 119.14926 * 359.97438 * 14 13 12 16 16 C 1.32029 * 120.95111 * 180.02562 * 15 14 13 17 17 C 1.38897 * 119.25003 * 359.97438 * 16 15 14 18 18 C 1.39566 * 118.43989 * 0.02562 * 17 16 15 19 19 C 1.48471 * 120.49954 * 179.97438 * 18 17 16 20 20 N 1.34775 * 119.99893 * 179.97438 * 19 18 17 21 21 O 1.21475 * 119.99673 * 359.97438 * 19 18 17 22 22 N 1.32423 * 119.15059 * 180.02562 * 14 13 12 23 23 C 1.39496 * 119.88550 * 0.27360 * 13 12 11 24 24 C 1.37790 * 119.94795 * 359.46792 * 23 13 12 25 25 H 0.96996 * 120.00599 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.96918 * 359.97438 * 11 10 9 27 27 H 1.08004 * 120.02365 * 179.97438 * 12 11 10 28 28 H 1.07999 * 120.37468 * 179.97438 * 16 15 14 29 29 H 1.07992 * 120.77919 * 180.02562 * 17 16 15 30 30 H 0.97003 * 120.00378 * 359.97438 * 20 19 18 31 31 H 0.97003 * 119.99648 * 179.97438 * 20 19 18 32 32 H 1.08000 * 120.02687 * 179.72279 * 23 13 12 33 33 H 1.08003 * 119.97827 * 180.22698 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4968 2.0466 -1.4000 5 1 1.4468 2.6527 0.7002 6 1 3.5469 1.4403 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0697 -3.5038 0.1054 11 6 3.4583 -3.4356 0.0912 12 6 4.2070 -4.5873 0.1992 13 6 3.5706 -5.8224 0.3234 14 6 4.3735 -7.0626 0.4403 15 7 5.6983 -6.9792 0.4245 16 6 6.4480 -8.0613 0.5256 17 6 5.8360 -9.3018 0.6507 18 6 4.4415 -9.3566 0.6641 19 6 3.7397 -10.6584 0.7951 20 7 2.3926 -10.6996 0.8075 21 8 4.3797 -11.6864 0.8912 22 7 3.7508 -8.2255 0.5568 23 6 2.1773 -5.8886 0.3321 24 6 1.4331 -4.7336 0.2292 25 1 -0.4851 0.8400 0.0004 26 1 3.9505 -2.4790 -0.0045 27 1 5.2856 -4.5338 0.1878 28 1 7.5251 -7.9827 0.5113 29 1 6.4253 -10.2028 0.7356 30 1 1.8815 -9.8786 0.7311 31 1 1.9342 -11.5502 0.8927 32 1 1.6822 -6.8441 0.4236 33 1 0.3543 -4.7840 0.2396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:49 Heat of formation + Delta-G solvation = 10.139910 kcal Electronic energy + Delta-G solvation = -20478.449225 eV Core-core repulsion = 17084.127056 eV Total energy + Delta-G solvation = -3394.322169 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17851 -39.38518 -38.96597 -36.60934 -34.39505 -33.28988 -32.78643 -32.15613 -30.33659 -28.74038 -25.85126 -25.64288 -24.01371 -22.23474 -21.58484 -20.58991 -18.41525 -18.26686 -17.78752 -17.19565 -16.47673 -15.67601 -15.54261 -15.48436 -14.67854 -14.48580 -14.32670 -14.30131 -13.82624 -13.79025 -13.63900 -12.87381 -12.57772 -11.84868 -11.58554 -11.45085 -11.08945 -10.89224 -10.88870 -10.79952 -10.69986 -10.55307 -9.98808 -9.75423 -9.55014 -9.26762 -8.94569 -8.34002 -7.29334 -6.65577 -4.20760 0.39287 0.76515 2.11690 2.16709 2.68667 3.03682 3.03900 3.04960 3.09879 3.80726 3.82241 3.84940 4.07085 4.53543 4.55194 4.82242 4.93000 4.97960 5.08723 5.42528 5.47784 5.65421 5.72694 6.08082 6.20431 6.27127 6.41451 6.50213 6.72343 6.79435 6.90494 7.06185 7.13611 7.21063 7.26565 7.62519 7.80042 7.88382 8.09003 8.79237 9.45415 10.50914 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.036919 B = 0.003189 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.231663 B = 8778.318047 C = 9520.006747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.392 4.392 8 H 0.098 0.902 9 O -0.162 6.162 10 C 0.172 3.828 11 C -0.246 4.246 12 C -0.013 4.013 13 C -0.168 4.168 14 C 0.396 3.604 15 N -0.509 5.509 16 C 0.159 3.841 17 C -0.206 4.206 18 C 0.132 3.868 19 C 0.581 3.419 20 N -0.831 5.831 21 O -0.534 6.534 22 N -0.505 5.505 23 C -0.020 4.020 24 C -0.204 4.204 25 H 0.274 0.726 26 H 0.133 0.867 27 H 0.123 0.877 28 H 0.173 0.827 29 H 0.154 0.846 30 H 0.415 0.585 31 H 0.406 0.594 32 H 0.125 0.875 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.167 -13.592 1.073 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.468 4.468 8 H 0.116 0.884 9 O -0.062 6.062 10 C 0.115 3.885 11 C -0.266 4.266 12 C -0.033 4.033 13 C -0.171 4.171 14 C 0.136 3.864 15 N -0.223 5.223 16 C -0.010 4.010 17 C -0.230 4.230 18 C -0.017 4.017 19 C 0.364 3.636 20 N -0.394 5.394 21 O -0.410 6.410 22 N -0.222 5.222 23 C -0.040 4.040 24 C -0.223 4.223 25 H 0.084 0.916 26 H 0.151 0.849 27 H 0.141 0.859 28 H 0.190 0.810 29 H 0.171 0.829 30 H 0.246 0.754 31 H 0.237 0.763 32 H 0.143 0.857 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.701 -13.112 1.029 14.761 hybrid contribution 0.596 0.059 0.058 0.602 sum 7.297 -13.053 1.087 14.994 Atomic orbital electron populations 1.70026 1.06132 1.28281 1.44004 1.25392 0.95905 0.99164 0.95998 0.85646 0.79031 0.79509 0.78951 1.19632 1.20065 1.18900 1.21490 0.92159 0.80538 1.52567 0.88449 1.83936 1.34974 1.11812 1.75461 1.19598 0.90379 0.87888 0.90622 1.21108 0.93551 0.99033 1.12892 1.20862 0.99375 0.90544 0.92472 1.17473 0.91945 0.88608 1.19121 1.21410 0.86437 0.90721 0.87842 1.68385 1.06922 1.32881 1.14149 1.23293 1.00901 0.87054 0.89712 1.22769 0.95288 1.01122 1.03789 1.21372 0.91845 0.92618 0.95909 1.17860 0.82805 0.87050 0.75935 1.43644 1.06684 1.14002 1.75101 1.90819 1.66533 1.33770 1.49838 1.68281 1.40990 0.98159 1.14803 1.20692 0.91957 0.97312 0.94041 1.20146 0.99830 0.89921 1.12414 0.91589 0.84948 0.85873 0.80960 0.82856 0.75409 0.76266 0.85719 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.62 13.67 55.48 0.76 -22.86 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.33 29.55 -169.99 -5.02 14.31 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.39 -10.29 9.48 30.89 0.29 -10.00 16 8 H 0.10 2.35 5.19 -52.49 -0.27 2.07 16 9 O -0.16 -4.32 9.75 0.35 0.00 -4.32 16 10 C 0.17 3.90 6.65 -38.99 -0.26 3.64 16 11 C -0.25 -5.07 9.15 -39.45 -0.36 -5.43 16 12 C -0.01 -0.23 9.55 -39.28 -0.38 -0.60 16 13 C -0.17 -2.97 5.88 -104.87 -0.62 -3.59 16 14 C 0.40 6.39 7.55 -157.00 -1.19 5.20 16 15 N -0.51 -7.55 9.42 -11.16 -0.11 -7.66 16 16 C 0.16 1.81 11.30 -17.22 -0.19 1.62 16 17 C -0.21 -2.38 9.72 -38.84 -0.38 -2.75 16 18 C 0.13 1.73 6.79 -82.67 -0.56 1.17 16 19 C 0.58 7.11 8.10 -12.04 -0.10 7.01 16 20 N -0.83 -7.31 8.87 30.67 0.27 -7.03 16 21 O -0.53 -7.77 17.25 5.39 0.09 -7.67 16 22 N -0.50 -7.30 8.70 -7.75 -0.07 -7.36 16 23 C -0.02 -0.35 9.55 -39.28 -0.38 -0.72 16 24 C -0.20 -4.01 9.98 -39.45 -0.39 -4.41 16 25 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.13 2.69 5.62 -52.49 -0.30 2.39 16 27 H 0.12 2.05 7.50 -52.48 -0.39 1.65 16 28 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.15 1.48 7.73 -52.49 -0.41 1.08 16 30 H 0.42 3.36 8.21 -40.82 -0.34 3.02 16 31 H 0.41 2.65 8.93 -40.82 -0.36 2.29 16 32 H 0.12 1.83 7.50 -52.49 -0.39 1.44 16 33 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -31.09 302.85 -6.55 -37.63 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -2.44 Total: 8.29 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -4.60 Total: -7.88 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.86 Total: -44.92 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.10 Total: -11.99 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.09 -6.55 -37.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.772 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds