Wall clock time and date at job start Tue Mar 31 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86798 * 119.99541 * 2 1 4 4 H 1.48496 * 109.47418 * 270.00170 * 3 2 1 5 5 H 1.48506 * 109.47464 * 30.00791 * 3 2 1 6 6 H 1.48502 * 109.47240 * 150.00342 * 3 2 1 7 7 C 1.38665 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00572 * 179.97438 * 7 2 1 9 9 O 1.34824 * 119.99821 * 359.97438 * 7 2 1 10 10 C 1.35658 * 117.00003 * 185.05403 * 9 7 2 11 11 C 1.39040 * 119.94358 * 354.44989 * 10 9 7 12 12 C 1.37793 * 120.05171 * 179.97438 * 11 10 9 13 13 C 1.39491 * 119.94850 * 359.97438 * 12 11 10 14 14 C 1.48202 * 120.05701 * 180.02562 * 13 12 11 15 15 N 1.32754 * 119.14926 * 359.97438 * 14 13 12 16 16 C 1.32029 * 120.95111 * 180.02562 * 15 14 13 17 17 C 1.38897 * 119.25003 * 359.97438 * 16 15 14 18 18 C 1.39566 * 118.43989 * 0.02562 * 17 16 15 19 19 C 1.48471 * 120.49954 * 179.97438 * 18 17 16 20 20 N 1.34775 * 119.99893 * 179.97438 * 19 18 17 21 21 O 1.21475 * 119.99673 * 359.97438 * 19 18 17 22 22 N 1.32423 * 119.15059 * 180.02562 * 14 13 12 23 23 C 1.39496 * 119.88550 * 0.27360 * 13 12 11 24 24 C 1.37790 * 119.94795 * 359.46792 * 23 13 12 25 25 H 0.96996 * 120.00599 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.96918 * 359.97438 * 11 10 9 27 27 H 1.08004 * 120.02365 * 179.97438 * 12 11 10 28 28 H 1.07999 * 120.37468 * 179.97438 * 16 15 14 29 29 H 1.07992 * 120.77919 * 180.02562 * 17 16 15 30 30 H 0.97003 * 120.00378 * 359.97438 * 20 19 18 31 31 H 0.97003 * 119.99648 * 179.97438 * 20 19 18 32 32 H 1.08000 * 120.02687 * 179.72279 * 23 13 12 33 33 H 1.08003 * 119.97827 * 180.22698 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4968 2.0466 -1.4000 5 1 1.4468 2.6527 0.7002 6 1 3.5469 1.4403 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0697 -3.5038 0.1054 11 6 3.4583 -3.4356 0.0912 12 6 4.2070 -4.5873 0.1992 13 6 3.5706 -5.8224 0.3234 14 6 4.3735 -7.0626 0.4403 15 7 5.6983 -6.9792 0.4245 16 6 6.4480 -8.0613 0.5256 17 6 5.8360 -9.3018 0.6507 18 6 4.4415 -9.3566 0.6641 19 6 3.7397 -10.6584 0.7951 20 7 2.3926 -10.6996 0.8075 21 8 4.3797 -11.6864 0.8912 22 7 3.7508 -8.2255 0.5568 23 6 2.1773 -5.8886 0.3321 24 6 1.4331 -4.7336 0.2292 25 1 -0.4851 0.8400 0.0004 26 1 3.9505 -2.4790 -0.0045 27 1 5.2856 -4.5338 0.1878 28 1 7.5251 -7.9827 0.5113 29 1 6.4253 -10.2028 0.7356 30 1 1.8815 -9.8786 0.7311 31 1 1.9342 -11.5502 0.8927 32 1 1.6822 -6.8441 0.4236 33 1 0.3543 -4.7840 0.2396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243588939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:48 Heat of formation + Delta-G solvation = -12.464989 kcal Electronic energy + Delta-G solvation = -20479.429447 eV Core-core repulsion = 17084.127056 eV Total energy + Delta-G solvation = -3395.302391 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.26849 -40.79075 -40.20419 -38.21067 -35.38877 -34.45373 -34.24652 -33.51988 -31.88187 -30.19056 -27.51015 -26.80724 -25.28514 -23.63424 -22.95650 -21.81510 -19.93885 -19.44811 -19.03941 -18.61369 -17.54348 -16.95540 -16.52509 -16.51749 -16.31321 -16.09472 -15.63164 -15.43313 -15.31749 -15.14469 -14.78811 -14.49393 -14.09229 -13.56983 -13.12856 -12.90854 -12.62860 -12.42568 -12.11576 -11.97852 -11.97206 -11.75519 -11.24487 -11.06412 -10.82119 -10.61724 -10.38817 -9.86341 -8.89839 -8.50717 -6.17439 -0.69093 -0.31772 0.60219 0.74901 1.38035 1.45938 1.55022 1.65576 2.11914 2.16945 2.61654 2.68228 2.94590 3.05914 3.21864 3.43059 3.68799 3.79034 4.02492 4.12545 4.17499 4.38354 4.54858 4.55462 4.75413 4.94282 5.11451 5.15591 5.25421 5.46797 5.61794 5.63822 5.67855 5.86306 5.98734 6.07408 6.22629 6.92344 6.93797 7.09941 7.69316 8.71243 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.036919 B = 0.003189 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.231663 B = 8778.318047 C = 9520.006747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.017 4.017 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.416 4.416 8 H 0.107 0.893 9 O -0.217 6.217 10 C 0.141 3.859 11 C -0.250 4.250 12 C -0.013 4.013 13 C -0.149 4.149 14 C 0.373 3.627 15 N -0.522 5.522 16 C 0.164 3.836 17 C -0.184 4.184 18 C 0.113 3.887 19 C 0.581 3.419 20 N -0.812 5.812 21 O -0.561 6.561 22 N -0.502 5.502 23 C -0.012 4.012 24 C -0.208 4.208 25 H 0.275 0.725 26 H 0.129 0.871 27 H 0.143 0.857 28 H 0.218 0.782 29 H 0.178 0.822 30 H 0.421 0.579 31 H 0.419 0.581 32 H 0.156 0.844 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.934 -16.196 1.363 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.216 4.216 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.492 4.492 8 H 0.125 0.875 9 O -0.121 6.121 10 C 0.088 3.912 11 C -0.269 4.269 12 C -0.033 4.033 13 C -0.152 4.152 14 C 0.111 3.889 15 N -0.236 5.236 16 C -0.004 4.004 17 C -0.207 4.207 18 C -0.035 4.035 19 C 0.363 3.637 20 N -0.376 5.376 21 O -0.438 6.438 22 N -0.219 5.219 23 C -0.032 4.032 24 C -0.227 4.227 25 H 0.084 0.916 26 H 0.147 0.853 27 H 0.161 0.839 28 H 0.235 0.765 29 H 0.195 0.805 30 H 0.252 0.748 31 H 0.252 0.748 32 H 0.174 0.826 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.479 -15.797 1.322 18.470 hybrid contribution 0.008 0.221 0.013 0.221 sum 9.487 -15.576 1.336 18.287 Atomic orbital electron populations 1.70161 1.08047 1.29114 1.47702 1.26595 0.96808 1.02760 0.95457 0.84592 0.77928 0.74476 0.79315 1.18777 1.19667 1.17495 1.21918 0.92806 0.81149 1.53314 0.87538 1.83924 1.36175 1.12719 1.79284 1.20116 0.91480 0.87974 0.91672 1.21189 0.92983 0.99902 1.12850 1.21028 1.00233 0.89977 0.92064 1.17794 0.92392 0.89468 1.15561 1.21087 0.87131 0.90470 0.90230 1.68364 1.06433 1.34625 1.14178 1.24047 1.02626 0.85880 0.87851 1.23179 0.94850 1.02219 1.00465 1.21682 0.92898 0.92442 0.96437 1.17795 0.83580 0.86341 0.76003 1.43550 1.05733 1.15056 1.73262 1.90817 1.67188 1.34279 1.51563 1.68176 1.41259 0.98077 1.14406 1.20979 0.91981 0.97611 0.92628 1.20389 1.00466 0.89807 1.12066 0.91594 0.85343 0.83878 0.76512 0.80504 0.74751 0.74797 0.82627 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.91 13.67 21.61 0.30 -53.61 16 2 C -0.02 -0.94 5.49 84.84 0.47 -0.48 16 3 Si 1.02 41.00 29.55 68.60 2.03 43.03 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 7 C -0.42 -23.11 9.48 67.92 0.64 -22.47 16 8 H 0.11 5.39 5.19 -2.91 -0.02 5.37 16 9 O -0.22 -12.38 9.75 -21.66 -0.21 -12.59 16 10 C 0.14 6.64 6.65 22.65 0.15 6.79 16 11 C -0.25 -10.46 9.15 22.36 0.20 -10.26 16 12 C -0.01 -0.47 9.55 22.47 0.21 -0.26 16 13 C -0.15 -4.98 5.88 -20.02 -0.12 -5.09 16 14 C 0.37 10.87 7.55 137.51 1.04 11.91 16 15 N -0.52 -13.48 9.42 -189.23 -1.78 -15.26 16 16 C 0.16 2.92 11.30 84.82 0.96 3.88 16 17 C -0.18 -3.40 9.72 22.75 0.22 -3.18 16 18 C 0.11 2.56 6.79 42.02 0.29 2.85 16 19 C 0.58 12.39 8.10 86.97 0.70 13.10 16 20 N -0.81 -11.87 8.87 -175.18 -1.55 -13.43 16 21 O -0.56 -14.67 17.25 -3.64 -0.06 -14.74 16 22 N -0.50 -12.84 8.70 -178.42 -1.55 -14.39 16 23 C -0.01 -0.41 9.55 22.47 0.21 -0.20 16 24 C -0.21 -8.31 9.98 22.35 0.22 -8.09 16 25 H 0.27 14.85 8.31 -92.71 -0.77 14.07 16 26 H 0.13 5.39 5.62 -2.91 -0.02 5.37 16 27 H 0.14 4.45 7.50 -2.91 -0.02 4.43 16 28 H 0.22 1.84 8.06 -2.91 -0.02 1.81 16 29 H 0.18 2.51 7.73 -2.91 -0.02 2.49 16 30 H 0.42 5.51 8.21 -92.71 -0.76 4.74 16 31 H 0.42 4.27 8.93 -92.71 -0.83 3.44 16 32 H 0.16 4.14 7.50 -2.91 -0.02 4.11 16 33 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -71.74 302.85 1.98 -69.76 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -0.38 Total: 22.74 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 5.21 Total: -11.50 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -4.59 Total: -96.70 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.27 Total: -27.33 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -71.74 1.98 -69.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.294 kcal (2) G-P(sol) polarization free energy of solvation -71.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds