Wall clock time and date at job start Tue Mar 31 2020 05:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31539 * 1 3 3 Si 1.86804 * 120.00398 * 2 1 4 4 H 1.48497 * 109.47314 * 269.99841 * 3 2 1 5 5 H 1.48510 * 109.46851 * 29.99900 * 3 2 1 6 6 H 1.48495 * 109.47036 * 149.99451 * 3 2 1 7 7 C 1.38677 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99580 * 0.02562 * 7 2 1 9 9 O 1.34801 * 120.00208 * 180.02562 * 7 2 1 10 10 C 1.35668 * 116.99760 * 174.94665 * 9 7 2 11 11 C 1.39046 * 119.93826 * 185.27134 * 10 9 7 12 12 C 1.37785 * 120.06011 * 179.76342 * 11 10 9 13 13 C 1.39539 * 119.93695 * 0.51572 * 12 11 10 14 14 C 1.48145 * 120.06008 * 179.72114 * 13 12 11 15 15 C 1.40031 * 120.86964 * 179.73941 * 14 13 12 16 16 N 1.31882 * 119.00246 * 179.71493 * 15 14 13 17 17 C 1.32577 * 120.90244 * 0.57313 * 16 15 14 18 18 C 1.48333 * 119.03978 * 179.72173 * 17 16 15 19 19 N 1.34773 * 119.99971 * 359.97438 * 18 17 16 20 20 O 1.21494 * 119.99958 * 179.97438 * 18 17 16 21 21 N 1.32570 * 121.92462 * 359.70103 * 17 16 15 22 22 C 1.31890 * 120.90090 * 0.02562 * 21 17 16 23 23 C 1.39547 * 119.88295 * 359.73762 * 13 12 11 24 24 C 1.37783 * 119.93966 * 0.02562 * 23 13 12 25 25 H 0.96996 * 119.99711 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.96552 * 0.02562 * 11 10 9 27 27 H 1.07996 * 120.03042 * 180.23474 * 12 11 10 28 28 H 1.07997 * 120.49638 * 359.97438 * 15 14 13 29 29 H 0.97004 * 120.00388 * 359.97438 * 19 18 17 30 30 H 0.96994 * 120.00312 * 180.02562 * 19 18 17 31 31 H 1.07997 * 120.50171 * 180.02562 * 22 21 17 32 32 H 1.08000 * 120.02801 * 180.02562 * 23 13 12 33 33 H 1.08000 * 119.97465 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4401 0.7001 7 6 2.0088 -1.2010 0.0005 8 1 1.4687 -2.1363 0.0005 9 8 3.3568 -1.2010 0.0011 10 6 3.9726 -2.4052 0.1080 11 6 5.3566 -2.4688 0.2254 12 6 5.9842 -3.6901 0.3391 13 6 5.2304 -4.8643 0.3256 14 6 5.9029 -6.1792 0.4414 15 6 5.1626 -7.3679 0.4353 16 7 5.7996 -8.5184 0.5349 17 6 7.1197 -8.5580 0.6510 18 6 7.7931 -9.8746 0.7665 19 7 7.0640 -11.0080 0.7530 20 8 9.0021 -9.9312 0.8732 21 7 7.8555 -7.4553 0.6665 22 6 7.2950 -6.2656 0.5664 23 6 3.8420 -4.7978 0.2024 24 6 3.2191 -3.5736 0.0940 25 1 -0.4849 0.8400 -0.0004 26 1 5.9398 -1.5598 0.2316 27 1 7.0589 -3.7388 0.4340 28 1 4.0867 -7.3430 0.3460 29 1 6.0987 -10.9628 0.6681 30 1 7.5043 -11.8689 0.8289 31 1 7.9007 -5.3716 0.5793 32 1 3.2562 -5.7051 0.1922 33 1 2.1446 -3.5215 -0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592409.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:44 Heat of formation + Delta-G solvation = 12.912298 kcal Electronic energy + Delta-G solvation = -20307.451621 eV Core-core repulsion = 16913.249671 eV Total energy + Delta-G solvation = -3394.201949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.27430 -39.52493 -38.99591 -37.04654 -34.39762 -33.50100 -32.98177 -32.41148 -30.67410 -28.75948 -26.02104 -24.99565 -24.61390 -22.07917 -21.86449 -20.79504 -18.66260 -18.33891 -17.78022 -17.57324 -16.53569 -16.14173 -15.59625 -15.54030 -14.94586 -14.28837 -14.18198 -14.15541 -13.99426 -13.84900 -13.65239 -12.93327 -12.62361 -12.55878 -12.19314 -11.99047 -11.10438 -11.07555 -11.00836 -10.99191 -10.39153 -10.33263 -9.93326 -9.83477 -9.71910 -9.33979 -9.04749 -8.62409 -7.42607 -6.70613 -4.33799 0.15002 0.98938 1.86838 1.89337 2.65111 2.91001 3.06680 3.09620 3.22402 3.78010 3.86989 4.00587 4.27980 4.32848 4.41441 4.48488 4.73323 4.80527 4.85155 5.02262 5.29748 5.42577 5.59840 5.80380 6.02675 6.15118 6.21299 6.45449 6.49690 6.62617 6.85370 6.86991 6.95407 7.02118 7.26340 7.49953 7.72446 7.79986 8.05352 8.62025 9.20806 10.35160 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.052224 B = 0.002894 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.020516 B = 9671.912370 C =10193.881560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.391 4.391 8 H 0.112 0.888 9 O -0.198 6.198 10 C 0.172 3.828 11 C -0.192 4.192 12 C -0.048 4.048 13 C -0.165 4.165 14 C -0.066 4.066 15 C 0.123 3.877 16 N -0.483 5.483 17 C 0.230 3.770 18 C 0.596 3.404 19 N -0.835 5.835 20 O -0.516 6.516 21 N -0.454 5.454 22 C 0.123 3.877 23 C -0.042 4.042 24 C -0.224 4.224 25 H 0.285 0.715 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.176 0.824 29 H 0.412 0.588 30 H 0.407 0.593 31 H 0.175 0.825 32 H 0.117 0.883 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.685 -12.758 0.711 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.465 4.465 8 H 0.129 0.871 9 O -0.101 6.101 10 C 0.117 3.883 11 C -0.211 4.211 12 C -0.066 4.066 13 C -0.168 4.168 14 C -0.071 4.071 15 C -0.044 4.044 16 N -0.199 5.199 17 C -0.038 4.038 18 C 0.377 3.623 19 N -0.401 5.401 20 O -0.388 6.388 21 N -0.168 5.168 22 C -0.045 4.045 23 C -0.061 4.061 24 C -0.243 4.243 25 H 0.095 0.905 26 H 0.142 0.858 27 H 0.138 0.862 28 H 0.192 0.808 29 H 0.242 0.758 30 H 0.239 0.761 31 H 0.192 0.808 32 H 0.135 0.865 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.818 -13.146 0.832 15.852 hybrid contribution -0.817 1.268 -0.130 1.514 sum 8.001 -11.878 0.703 14.339 Atomic orbital electron populations 1.69623 1.05732 1.29184 1.45278 1.24556 0.95105 0.99218 0.95065 0.86146 0.80400 0.80975 0.79292 1.19551 1.20447 1.18102 1.20889 0.76570 0.96983 1.52106 0.87099 1.83537 1.23027 1.26187 1.77324 1.19303 0.91766 0.85378 0.91900 1.20153 0.91867 0.97979 1.11075 1.20703 0.98555 0.90945 0.96420 1.17926 0.93244 0.89928 1.15689 1.20849 0.95265 0.95473 0.95498 1.23296 1.00961 0.86174 0.94009 1.68072 1.09756 1.30623 1.11424 1.22405 0.86681 0.93800 1.00906 1.17211 0.85934 0.82679 0.76453 1.43538 1.12374 1.07723 1.76463 1.90839 1.13277 1.86625 1.48091 1.68056 1.40718 0.98317 1.09725 1.23398 0.91917 0.95218 0.93925 1.20848 0.92755 0.97160 0.95309 1.21211 1.01455 0.91498 1.10100 0.90504 0.85802 0.86168 0.80751 0.75768 0.76140 0.80773 0.86548 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.96 13.96 55.48 0.77 -22.18 16 2 C 0.07 1.71 5.49 -17.51 -0.10 1.61 16 3 Si 0.91 19.81 28.62 -169.99 -4.86 14.95 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -9.94 9.94 30.89 0.31 -9.64 16 8 H 0.11 2.85 5.42 -52.48 -0.28 2.57 16 9 O -0.20 -4.67 8.58 0.38 0.00 -4.67 16 10 C 0.17 3.45 6.65 -38.98 -0.26 3.19 16 11 C -0.19 -3.24 9.98 -39.45 -0.39 -3.63 16 12 C -0.05 -0.68 9.44 -39.26 -0.37 -1.05 16 13 C -0.17 -2.36 5.88 -104.86 -0.62 -2.98 16 14 C -0.07 -0.86 5.92 -104.48 -0.62 -1.48 16 15 C 0.12 1.47 10.70 -16.86 -0.18 1.29 16 16 N -0.48 -6.00 9.54 -10.87 -0.10 -6.10 16 17 C 0.23 3.25 7.59 -156.97 -1.19 2.05 16 18 C 0.60 7.94 8.12 -12.11 -0.10 7.85 16 19 N -0.84 -7.03 8.86 30.64 0.27 -6.75 16 20 O -0.52 -8.62 17.69 5.37 0.10 -8.53 16 21 N -0.45 -6.83 10.10 -10.87 -0.11 -6.94 16 22 C 0.12 1.60 10.70 -16.85 -0.18 1.42 16 23 C -0.04 -0.64 9.44 -39.26 -0.37 -1.01 16 24 C -0.22 -4.12 9.15 -39.45 -0.36 -4.48 16 25 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.12 1.93 8.06 -52.48 -0.42 1.50 16 27 H 0.12 1.33 6.29 -52.49 -0.33 1.00 16 28 H 0.18 1.63 6.33 -52.49 -0.33 1.30 16 29 H 0.41 2.81 8.12 -40.82 -0.33 2.48 16 30 H 0.41 2.49 8.93 -40.82 -0.36 2.13 16 31 H 0.18 1.81 6.33 -52.49 -0.33 1.47 16 32 H 0.12 1.38 6.29 -52.49 -0.33 1.05 16 33 H 0.14 2.69 5.62 -52.49 -0.30 2.39 16 LS Contribution 297.37 15.07 4.48 4.48 Total: -1.00 -30.18 297.37 -6.04 -36.22 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -2.16 Total: 6.39 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -4.43 Total: -6.85 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.83 Total: -41.98 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.10 Total: -13.20 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.86 Total: 14.95 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.18 -6.04 -36.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592409.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.131 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds