Wall clock time and date at job start Tue Mar 31 2020 05:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31539 * 1 3 3 Si 1.86804 * 120.00398 * 2 1 4 4 H 1.48497 * 109.47314 * 269.99841 * 3 2 1 5 5 H 1.48510 * 109.46851 * 29.99900 * 3 2 1 6 6 H 1.48495 * 109.47036 * 149.99451 * 3 2 1 7 7 C 1.38677 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99580 * 0.02562 * 7 2 1 9 9 O 1.34801 * 120.00208 * 180.02562 * 7 2 1 10 10 C 1.35668 * 116.99760 * 174.94665 * 9 7 2 11 11 C 1.39046 * 119.93826 * 185.27134 * 10 9 7 12 12 C 1.37785 * 120.06011 * 179.76342 * 11 10 9 13 13 C 1.39539 * 119.93695 * 0.51572 * 12 11 10 14 14 C 1.48145 * 120.06008 * 179.72114 * 13 12 11 15 15 C 1.40031 * 120.86964 * 179.73941 * 14 13 12 16 16 N 1.31882 * 119.00246 * 179.71493 * 15 14 13 17 17 C 1.32577 * 120.90244 * 0.57313 * 16 15 14 18 18 C 1.48333 * 119.03978 * 179.72173 * 17 16 15 19 19 N 1.34773 * 119.99971 * 359.97438 * 18 17 16 20 20 O 1.21494 * 119.99958 * 179.97438 * 18 17 16 21 21 N 1.32570 * 121.92462 * 359.70103 * 17 16 15 22 22 C 1.31890 * 120.90090 * 0.02562 * 21 17 16 23 23 C 1.39547 * 119.88295 * 359.73762 * 13 12 11 24 24 C 1.37783 * 119.93966 * 0.02562 * 23 13 12 25 25 H 0.96996 * 119.99711 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.96552 * 0.02562 * 11 10 9 27 27 H 1.07996 * 120.03042 * 180.23474 * 12 11 10 28 28 H 1.07997 * 120.49638 * 359.97438 * 15 14 13 29 29 H 0.97004 * 120.00388 * 359.97438 * 19 18 17 30 30 H 0.96994 * 120.00312 * 180.02562 * 19 18 17 31 31 H 1.07997 * 120.50171 * 180.02562 * 22 21 17 32 32 H 1.08000 * 120.02801 * 180.02562 * 23 13 12 33 33 H 1.08000 * 119.97465 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4401 0.7001 7 6 2.0088 -1.2010 0.0005 8 1 1.4687 -2.1363 0.0005 9 8 3.3568 -1.2010 0.0011 10 6 3.9726 -2.4052 0.1080 11 6 5.3566 -2.4688 0.2254 12 6 5.9842 -3.6901 0.3391 13 6 5.2304 -4.8643 0.3256 14 6 5.9029 -6.1792 0.4414 15 6 5.1626 -7.3679 0.4353 16 7 5.7996 -8.5184 0.5349 17 6 7.1197 -8.5580 0.6510 18 6 7.7931 -9.8746 0.7665 19 7 7.0640 -11.0080 0.7530 20 8 9.0021 -9.9312 0.8732 21 7 7.8555 -7.4553 0.6665 22 6 7.2950 -6.2656 0.5664 23 6 3.8420 -4.7978 0.2024 24 6 3.2191 -3.5736 0.0940 25 1 -0.4849 0.8400 -0.0004 26 1 5.9398 -1.5598 0.2316 27 1 7.0589 -3.7388 0.4340 28 1 4.0867 -7.3430 0.3460 29 1 6.0987 -10.9628 0.6681 30 1 7.5043 -11.8689 0.8289 31 1 7.9007 -5.3716 0.5793 32 1 3.2562 -5.7051 0.1922 33 1 2.1446 -3.5215 -0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592409.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:44 Heat of formation + Delta-G solvation = -9.490724 kcal Electronic energy + Delta-G solvation = -20308.423089 eV Core-core repulsion = 16913.249671 eV Total energy + Delta-G solvation = -3395.173417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.34418 -40.92624 -40.10784 -38.45279 -35.40553 -34.67515 -34.42817 -33.75302 -31.99335 -30.03208 -27.56910 -26.15667 -25.84830 -23.35507 -23.05937 -22.01068 -19.95844 -19.61578 -19.18764 -18.72361 -17.53790 -17.40010 -16.65237 -16.64106 -16.46612 -15.82853 -15.69861 -15.38358 -15.10442 -14.94485 -14.77186 -14.34215 -14.14946 -14.03349 -13.53385 -13.35324 -12.73164 -12.50030 -12.27527 -12.05959 -11.95915 -11.43147 -11.35547 -11.18895 -10.81868 -10.68903 -10.40412 -9.91465 -8.82665 -8.53112 -6.24349 -0.94541 -0.01255 0.53669 0.63678 1.34096 1.36343 1.52240 1.58126 1.95872 2.26378 2.62562 2.85005 2.88693 3.00481 3.15980 3.36243 3.42652 3.65006 3.70413 3.96382 4.13066 4.22031 4.45403 4.55451 4.75043 4.90718 5.11628 5.17417 5.28713 5.47350 5.57699 5.73147 5.74608 5.76589 5.84059 6.12605 6.18192 6.80679 6.81416 7.16024 7.51929 8.57384 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.052224 B = 0.002894 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.020516 B = 9671.912370 C =10193.881560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.400 4.400 8 H 0.089 0.911 9 O -0.234 6.234 10 C 0.137 3.863 11 C -0.191 4.191 12 C -0.042 4.042 13 C -0.135 4.135 14 C -0.079 4.079 15 C 0.135 3.865 16 N -0.477 5.477 17 C 0.230 3.770 18 C 0.591 3.409 19 N -0.806 5.806 20 O -0.557 6.557 21 N -0.485 5.485 22 C 0.133 3.867 23 C -0.041 4.041 24 C -0.237 4.237 25 H 0.286 0.714 26 H 0.136 0.864 27 H 0.162 0.838 28 H 0.204 0.796 29 H 0.423 0.577 30 H 0.421 0.579 31 H 0.201 0.799 32 H 0.152 0.848 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.050 -15.118 0.935 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.476 4.476 8 H 0.107 0.893 9 O -0.141 6.141 10 C 0.086 3.914 11 C -0.210 4.210 12 C -0.060 4.060 13 C -0.137 4.137 14 C -0.084 4.084 15 C -0.032 4.032 16 N -0.193 5.193 17 C -0.039 4.039 18 C 0.371 3.629 19 N -0.373 5.373 20 O -0.433 6.433 21 N -0.199 5.199 22 C -0.033 4.033 23 C -0.059 4.059 24 C -0.256 4.256 25 H 0.096 0.904 26 H 0.154 0.846 27 H 0.180 0.820 28 H 0.221 0.779 29 H 0.255 0.745 30 H 0.255 0.745 31 H 0.218 0.782 32 H 0.169 0.831 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.195 -15.588 1.056 19.221 hybrid contribution -1.191 1.362 -0.156 1.816 sum 10.004 -14.226 0.901 17.415 Atomic orbital electron populations 1.69706 1.06953 1.29791 1.49158 1.25275 0.95823 1.02181 0.95332 0.85262 0.78981 0.77532 0.79303 1.19135 1.19548 1.18326 1.20767 0.77864 0.96356 1.52604 0.89327 1.83500 1.21516 1.27704 1.81335 1.19906 0.93278 0.85143 0.93038 1.20461 0.90535 0.99826 1.10164 1.21163 1.00667 0.89663 0.94533 1.18151 0.92897 0.90789 1.11881 1.20747 0.95451 0.94925 0.97228 1.23836 1.02274 0.85610 0.91519 1.68193 1.08850 1.30630 1.11655 1.22729 0.87349 0.94126 0.99668 1.17322 0.85599 0.83459 0.76475 1.43366 1.12790 1.07164 1.73933 1.90825 1.14917 1.87124 1.50431 1.68139 1.41510 0.99101 1.11195 1.23853 0.92157 0.95580 0.91752 1.21156 0.93552 0.97040 0.94174 1.21246 1.00734 0.92705 1.10926 0.90436 0.84573 0.82018 0.77915 0.74453 0.74537 0.78215 0.83063 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.78 13.96 21.62 0.30 -51.47 16 2 C 0.01 0.73 5.49 84.84 0.47 1.20 16 3 Si 0.97 42.50 28.62 68.60 1.96 44.47 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.40 -21.68 9.94 67.92 0.68 -21.00 16 8 H 0.09 4.97 5.42 -2.91 -0.02 4.96 16 9 O -0.23 -11.52 8.58 -21.54 -0.18 -11.71 16 10 C 0.14 5.58 6.65 22.66 0.15 5.73 16 11 C -0.19 -6.10 9.98 22.36 0.22 -5.88 16 12 C -0.04 -1.04 9.44 22.48 0.21 -0.83 16 13 C -0.14 -3.29 5.88 -20.02 -0.12 -3.41 16 14 C -0.08 -1.67 5.92 -19.77 -0.12 -1.79 16 15 C 0.13 2.56 10.70 85.12 0.91 3.47 16 16 N -0.48 -9.85 9.54 -188.31 -1.80 -11.64 16 17 C 0.23 5.71 7.59 137.55 1.04 6.75 16 18 C 0.59 14.18 8.12 86.93 0.71 14.89 16 19 N -0.81 -10.97 8.86 -175.27 -1.55 -12.53 16 20 O -0.56 -17.68 17.69 -3.70 -0.07 -17.74 16 21 N -0.49 -12.93 10.10 -188.30 -1.90 -14.83 16 22 C 0.13 2.86 10.70 85.12 0.91 3.77 16 23 C -0.04 -1.13 9.44 22.48 0.21 -0.92 16 24 C -0.24 -8.79 9.15 22.35 0.20 -8.59 16 25 H 0.29 14.85 8.31 -92.71 -0.77 14.08 16 26 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 27 H 0.16 2.64 6.29 -2.91 -0.02 2.62 16 28 H 0.20 2.65 6.33 -2.91 -0.02 2.63 16 29 H 0.42 4.17 8.12 -92.71 -0.75 3.42 16 30 H 0.42 3.85 8.93 -92.71 -0.83 3.02 16 31 H 0.20 3.06 6.33 -2.91 -0.02 3.04 16 32 H 0.15 2.98 6.29 -2.91 -0.02 2.96 16 33 H 0.12 4.86 5.62 -2.91 -0.02 4.85 16 Total: -1.00 -70.16 297.37 1.88 -68.27 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -0.36 Total: 13.80 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 5.48 Total: -6.60 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -4.95 Total: -90.48 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.25 Total: -29.45 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.96 Total: 44.47 kcal Total: -70.16 1.88 -68.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592409.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.783 kcal (2) G-P(sol) polarization free energy of solvation -70.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds