Wall clock time and date at job start Tue Mar 31 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48498 * 109.47043 * 269.99544 * 3 2 1 5 5 H 1.48497 * 109.46966 * 29.99670 * 3 2 1 6 6 H 1.48500 * 109.47028 * 149.99575 * 3 2 1 7 7 C 1.37877 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00003 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99917 * 180.02562 * 7 2 1 10 10 N 1.46894 * 109.47037 * 180.02562 * 9 7 2 11 11 C 1.46904 * 111.00050 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47029 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.47192 * 60.00495 * 12 11 10 14 14 O 1.42899 * 109.47136 * 300.00304 * 12 11 10 15 15 C 1.52998 * 109.46680 * 180.02562 * 12 11 10 16 16 O 1.42907 * 109.46887 * 185.00560 * 15 12 11 17 17 C 1.35921 * 116.99625 * 180.02562 * 16 15 12 18 18 C 1.38724 * 120.03731 * 179.97438 * 17 16 15 19 19 C 1.38148 * 119.95527 * 179.69388 * 18 17 16 20 20 C 1.38364 * 120.04091 * 0.26026 * 19 18 17 21 21 Cl 1.73606 * 119.95372 * 180.02562 * 20 19 18 22 22 C 1.38363 * 120.08849 * 0.02562 * 20 19 18 23 23 C 1.38145 * 120.04359 * 359.97438 * 22 20 19 24 24 H 0.96999 * 119.99321 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46955 * 60.00657 * 9 7 2 26 26 H 1.09001 * 109.46988 * 300.00772 * 9 7 2 27 27 H 1.00902 * 111.00182 * 56.04952 * 10 9 7 28 28 H 1.09002 * 109.46585 * 60.00461 * 11 10 9 29 29 H 1.08996 * 109.47245 * 300.00375 * 11 10 9 30 30 H 0.96697 * 114.00099 * 299.99562 * 14 12 11 31 31 H 1.08996 * 109.47766 * 65.00103 * 15 12 11 32 32 H 1.09002 * 109.47091 * 304.99749 * 15 12 11 33 33 H 1.08002 * 120.02546 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.97887 * 180.27444 * 19 18 17 35 35 H 1.07998 * 119.98307 * 180.02562 * 22 20 19 36 36 H 1.07997 * 120.02355 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4697 -2.6183 0.0009 12 6 5.9409 -4.0740 0.0015 13 1 5.5640 -4.5782 -0.8883 14 8 5.4467 -4.7342 1.1685 15 6 7.4704 -4.1148 0.0021 16 8 7.9107 -5.4693 -0.1150 17 6 9.2530 -5.6826 -0.1295 18 6 9.7499 -6.9730 -0.2402 19 6 11.1145 -7.1873 -0.2611 20 6 11.9854 -6.1163 -0.1662 21 17 13.6998 -6.3882 -0.1933 22 6 11.4917 -4.8291 -0.0497 23 6 10.1278 -4.6107 -0.0285 24 1 -0.4849 0.8401 -0.0004 25 1 3.8745 -0.6802 0.8912 26 1 3.8752 -0.6804 -0.8888 27 1 3.6260 -3.0952 -0.7807 28 1 5.8466 -2.1145 0.8910 29 1 5.8466 -2.1143 -0.8889 30 1 5.7428 -4.3383 1.9995 31 1 7.8449 -3.6902 0.9334 32 1 7.8496 -3.5355 -0.8398 33 1 9.0705 -7.8092 -0.3146 34 1 11.5018 -8.1914 -0.3518 35 1 12.1730 -3.9943 0.0238 36 1 9.7428 -3.6058 0.0629 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250653796.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:20 Heat of formation + Delta-G solvation = -94.707333 kcal Electronic energy + Delta-G solvation = -19045.374056 eV Core-core repulsion = 15747.612863 eV Total energy + Delta-G solvation = -3297.761193 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26017 -39.32280 -38.19839 -37.10595 -36.37447 -34.45364 -32.37016 -31.81103 -30.57112 -29.08440 -26.02616 -23.99645 -23.27729 -22.88668 -22.40094 -19.41403 -18.96338 -17.96348 -17.65103 -17.33139 -16.84880 -16.36670 -16.18798 -15.68413 -15.52016 -15.26391 -14.74660 -14.55154 -14.43422 -14.21137 -14.14331 -13.64368 -13.22304 -13.07609 -12.73327 -12.59619 -12.47687 -12.40700 -11.92466 -11.80511 -11.65015 -11.63240 -11.51824 -10.91854 -10.82025 -10.15498 -9.16577 -9.12703 -8.30048 -6.35424 0.17196 0.20639 1.18168 1.35099 1.37878 1.48799 2.00616 2.34173 2.58120 3.03746 3.34335 3.55410 3.71707 3.81923 3.88196 4.00437 4.06762 4.14992 4.30619 4.36933 4.39401 4.52517 4.67152 4.76690 4.90158 4.94831 5.01586 5.07312 5.19567 5.23286 5.51772 5.54472 5.92564 6.31592 6.52079 6.63419 6.74475 6.91521 7.29452 8.86938 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.041967 B = 0.002367 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.025887 B =11827.105606 C =12381.863144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.531 4.531 8 H 0.033 0.967 9 C 0.176 3.824 10 N -0.684 5.684 11 C 0.030 3.970 12 C 0.122 3.878 13 H 0.095 0.905 14 O -0.561 6.561 15 C 0.032 3.968 16 O -0.318 6.318 17 C 0.122 3.878 18 C -0.152 4.152 19 C -0.070 4.070 20 C -0.087 4.087 21 Cl -0.073 7.073 22 C -0.072 4.072 23 C -0.201 4.201 24 H 0.268 0.732 25 H 0.029 0.971 26 H -0.011 1.011 27 H 0.336 0.664 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.384 0.616 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.146 0.854 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.241 -10.095 -0.653 30.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.194 4.194 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.570 4.570 8 H 0.051 0.949 9 C 0.047 3.953 10 N -0.315 5.315 11 C -0.100 4.100 12 C 0.062 3.938 13 H 0.113 0.887 14 O -0.367 6.367 15 C -0.044 4.044 16 O -0.232 6.232 17 C 0.076 3.924 18 C -0.170 4.170 19 C -0.089 4.089 20 C -0.114 4.114 21 Cl -0.044 7.044 22 C -0.090 4.090 23 C -0.220 4.220 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.007 0.993 27 H 0.153 0.847 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.233 0.767 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.164 0.836 34 H 0.174 0.826 35 H 0.169 0.831 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 28.746 -10.589 -0.418 30.637 hybrid contribution 0.262 1.437 -0.550 1.561 sum 29.007 -9.152 -0.968 30.432 Atomic orbital electron populations 1.70073 1.08346 1.28277 1.52240 1.25979 0.95719 1.03620 0.94112 0.85574 0.79389 0.77875 0.79175 1.19089 1.20855 1.16870 1.21369 0.91683 0.93326 1.50581 0.94870 1.19767 0.93512 0.86982 0.95008 1.60245 1.06597 1.14527 1.50130 1.22592 0.89144 0.96026 1.02193 1.21783 0.89884 0.92121 0.90032 0.88693 1.86620 1.75978 1.57872 1.16252 1.23654 0.95480 0.81352 1.03895 1.86144 1.19433 1.29933 1.87664 1.19390 0.82796 0.94796 0.95395 1.20615 0.95301 0.95346 1.05765 1.21067 0.91305 0.99457 0.97066 1.20955 0.85053 0.95379 1.09965 1.98365 1.12091 1.96772 1.97218 1.21080 0.95233 0.95971 0.96759 1.21456 0.93218 0.99560 1.07778 0.92363 0.95282 0.99313 0.84706 0.89825 0.93367 0.76742 0.89446 0.89128 0.83601 0.82615 0.83056 0.82868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.45 13.96 21.45 0.30 -59.16 16 2 C 0.00 0.17 5.47 84.65 0.46 0.64 16 3 Si 0.96 43.06 27.47 68.60 1.88 44.94 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.25 -10.06 6.54 99.48 0.65 -9.40 16 7 C -0.53 -30.75 9.87 25.60 0.25 -30.50 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 9 C 0.18 8.07 4.51 85.56 0.39 8.46 16 10 N -0.68 -26.61 6.36 -517.92 -3.29 -29.90 16 11 C 0.03 0.81 5.35 86.30 0.46 1.27 16 12 C 0.12 2.87 3.46 30.60 0.11 2.97 16 13 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 14 O -0.56 -15.59 13.17 -144.33 -1.90 -17.49 16 15 C 0.03 0.55 4.37 71.98 0.31 0.86 16 16 O -0.32 -6.84 10.10 -88.01 -0.89 -7.73 16 17 C 0.12 2.29 6.69 22.50 0.15 2.44 16 18 C -0.15 -2.58 9.99 22.36 0.22 -2.36 16 19 C -0.07 -1.04 9.82 22.28 0.22 -0.82 16 20 C -0.09 -1.34 6.32 22.33 0.14 -1.20 16 21 Cl -0.07 -1.07 28.95 -2.72 -0.08 -1.14 16 22 C -0.07 -1.03 9.82 22.28 0.22 -0.81 16 23 C -0.20 -3.07 9.04 22.36 0.20 -2.87 16 24 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 25 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 26 H -0.01 -0.47 7.57 -2.39 -0.02 -0.49 16 27 H 0.34 13.21 8.72 -89.69 -0.78 12.42 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.38 8.07 9.04 -74.06 -0.67 7.40 16 31 H 0.09 1.18 7.65 -2.39 -0.02 1.16 16 32 H 0.09 1.24 7.67 -2.39 -0.02 1.22 16 33 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 34 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 35 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 36 H 0.15 1.73 6.30 -2.91 -0.02 1.71 16 Total: -1.00 -70.51 324.58 -1.24 -71.75 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -0.40 Total: 20.66 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 3.14 Total: -21.92 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -2.99 Total: -89.06 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -2.79 Total: -25.22 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.94 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.14 kcal Total: -70.51 -1.24 -71.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250653796.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.961 kcal (2) G-P(sol) polarization free energy of solvation -70.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds