Wall clock time and date at job start Tue Mar 31 2020 05:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 S 1.76204 * 119.97176 * 180.02562 * 7 6 5 9 9 O 1.42100 * 106.40193 * 23.51529 * 8 7 6 10 10 O 1.42097 * 106.40122 * 156.43705 * 8 7 6 11 11 N 1.65604 * 107.21661 * 269.98080 * 8 7 6 12 12 C 1.46501 * 119.99533 * 269.99989 * 11 8 7 13 13 C 1.46494 * 120.00257 * 89.99881 * 11 8 7 14 14 C 1.50701 * 109.47332 * 94.99973 * 13 11 8 15 15 H 1.08008 * 119.99500 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00324 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99844 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99920 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47277 * 60.00408 * 18 16 14 20 20 H 1.48506 * 109.46788 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47470 * 299.99815 * 18 16 14 22 22 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 23 23 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 24 24 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 25 25 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 27 27 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 28 28 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 29 29 H 1.08999 * 109.47206 * 90.00038 * 12 11 8 30 30 H 1.09007 * 109.46760 * 210.00196 * 12 11 8 31 31 H 1.09000 * 109.47179 * 329.99712 * 12 11 8 32 32 H 1.09004 * 109.47260 * 215.00183 * 13 11 8 33 33 H 1.09000 * 109.47196 * 334.99707 * 13 11 8 34 34 H 0.96994 * 119.99881 * 179.97438 * 17 16 14 35 35 H 1.08006 * 120.02917 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 16 5.8154 2.6120 0.0002 9 8 6.1488 3.8817 0.5442 10 8 6.2832 1.3858 0.5450 11 7 6.3049 2.6380 -1.5816 12 6 6.5897 1.3825 -2.2809 13 6 6.4532 3.9163 -2.2816 14 6 7.8891 4.3674 -2.2051 15 1 8.6184 3.7620 -1.6871 16 6 8.2720 5.5522 -2.7971 17 7 7.3842 6.2885 -3.4291 18 14 10.0517 6.1116 -2.7016 19 1 10.9254 5.0937 -3.3384 20 1 10.2022 7.4068 -3.4124 21 1 10.4423 6.2790 -1.2787 22 6 3.4311 1.2849 -0.0001 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2128 2.3203 -0.0106 27 1 1.3339 4.5114 0.0011 28 1 3.7922 4.6381 0.0002 29 1 5.6802 1.0182 -2.7585 30 1 7.3544 1.5540 -3.0385 31 1 6.9466 0.6412 -1.5659 32 1 6.1659 3.7941 -3.3260 33 1 5.8122 4.6633 -1.8136 34 1 7.6535 7.1222 -3.8453 35 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259183168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:36 Heat of formation + Delta-G solvation = -77.174004 kcal Electronic energy + Delta-G solvation = -20625.224556 eV Core-core repulsion = 17330.267372 eV Total energy + Delta-G solvation = -3294.957184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.18800 -37.47772 -36.62979 -35.50424 -35.16177 -32.42683 -31.36363 -30.29249 -27.76768 -27.49660 -25.06975 -23.07743 -22.53223 -22.18340 -19.10287 -17.84576 -16.71417 -16.56799 -16.44203 -16.09054 -15.92682 -15.75188 -15.25754 -14.45959 -13.94836 -13.75152 -13.40002 -13.27338 -12.98252 -12.62589 -12.26631 -12.14051 -12.00720 -11.61662 -11.42319 -11.38077 -11.27586 -11.13690 -11.04836 -10.69468 -10.56129 -10.41010 -10.01742 -9.75159 -9.37278 -8.43132 -8.36026 -8.05306 -6.05417 -4.09506 0.73778 1.07970 1.34033 3.07284 3.35595 3.38785 3.38934 3.44188 3.80873 4.35086 4.46800 4.59515 4.74864 4.83799 4.88295 4.93176 5.17812 5.22895 5.29202 5.33258 5.49374 5.67955 5.81562 6.04199 6.06476 6.19188 6.24126 6.31203 6.52124 6.57109 7.21343 7.21851 7.38279 7.58419 7.91870 8.20361 8.92673 9.55630 11.03167 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.029216 B = 0.004716 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.134480 B = 5935.564675 C = 6212.460721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.100 3.900 4 C -0.162 4.162 5 C -0.102 4.102 6 C -0.052 4.052 7 C -0.634 4.634 8 S 2.687 3.313 9 O -0.938 6.938 10 O -0.973 6.973 11 N -0.984 5.984 12 C 0.092 3.908 13 C 0.255 3.745 14 C -0.530 4.530 15 H 0.061 0.939 16 C 0.063 3.937 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.053 4.053 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.146 0.854 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.248 -9.525 4.273 17.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.054 3.946 4 C -0.181 4.181 5 C -0.121 4.121 6 C -0.072 4.072 7 C -0.718 4.718 8 S 2.773 3.227 9 O -0.928 6.928 10 O -0.964 6.964 11 N -0.825 5.825 12 C -0.054 4.054 13 C 0.133 3.867 14 C -0.569 4.569 15 H 0.080 0.920 16 C -0.139 4.139 17 N -0.535 5.535 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.073 4.073 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.149 0.851 27 H 0.152 0.848 28 H 0.164 0.836 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.697 -9.520 4.873 17.377 hybrid contribution -0.205 0.546 -0.401 0.708 sum -13.902 -8.974 4.471 17.140 Atomic orbital electron populations 1.23060 0.78520 1.04001 1.01281 1.86091 1.21250 1.26567 1.89072 1.19028 0.92385 0.84347 0.98833 1.21469 1.00069 0.92579 1.03988 1.21103 0.94688 0.97264 0.99074 1.20995 0.94040 0.97780 0.94344 1.31515 1.29085 0.98103 1.13058 1.02279 0.73336 0.73497 0.73554 1.93608 1.81439 1.41293 1.76481 1.93500 1.79044 1.46500 1.77318 1.57309 1.80028 1.14001 1.31177 1.21420 1.00752 0.84958 0.98262 1.19131 0.97555 0.77108 0.92910 1.21459 0.94405 1.06081 1.34958 0.92042 1.24922 0.97909 0.96145 0.94962 1.69909 1.33888 1.14027 1.35705 0.86566 0.84636 0.77819 0.78501 1.20167 1.21205 1.19923 1.20130 0.91785 0.97243 0.98154 0.92708 0.92640 0.88151 0.85058 0.84831 0.83619 0.94113 0.90029 0.91268 0.94481 0.94238 0.92628 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.87 10.50 -19.44 -0.20 -4.07 16 3 C 0.10 1.37 6.69 -39.22 -0.26 1.11 16 4 C -0.16 -1.95 9.04 -39.43 -0.36 -2.30 16 5 C -0.10 -1.32 10.04 -39.60 -0.40 -1.72 16 6 C -0.05 -0.83 9.52 -39.56 -0.38 -1.21 16 7 C -0.63 -10.86 5.97 -39.61 -0.24 -11.10 16 8 S 2.69 54.25 5.65 -107.50 -0.61 53.64 16 9 O -0.94 -22.07 16.25 -57.17 -0.93 -22.99 16 10 O -0.97 -20.19 15.88 -57.17 -0.91 -21.09 16 11 N -0.98 -20.53 3.17 -123.05 -0.39 -20.92 16 12 C 0.09 1.59 10.68 59.85 0.64 2.23 16 13 C 0.25 6.32 5.08 -5.20 -0.03 6.30 16 14 C -0.53 -14.73 9.38 -34.44 -0.32 -15.05 16 15 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.90 -25.86 13.29 55.43 0.74 -25.13 16 18 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.05 -0.84 9.46 -39.44 -0.37 -1.21 16 23 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 24 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 27 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.15 2.33 7.61 -52.49 -0.40 1.93 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.41 8.07 -51.92 -0.42 0.99 16 31 H 0.07 1.11 7.02 -51.93 -0.36 0.74 16 32 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 33 H 0.04 1.02 7.61 -51.93 -0.40 0.63 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.15 2.15 7.62 -52.48 -0.40 1.75 16 LS Contribution 314.84 15.07 4.74 4.74 Total: -1.00 -33.62 314.84 -7.73 -41.35 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.34 Total: -2.08 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -0.82 Total: -20.09 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.35 Total: -46.05 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -2.04 Total: -48.16 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 54.25 SS G_CDS: -0.61 Total: 53.64 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.62 -7.73 -41.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259183168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.820 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds