Wall clock time and date at job start Tue Mar 31 2020 05:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35893 * 117.00317 * 2 1 4 4 C 1.38731 * 120.05917 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94821 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05315 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94339 * 179.70455 * 6 5 4 8 8 S 1.81396 * 109.47115 * 90.00365 * 7 6 5 9 9 O 1.42097 * 110.54213 * 291.62294 * 8 7 6 10 10 O 1.42096 * 110.54523 * 68.37659 * 8 7 6 11 11 N 1.65608 * 104.44962 * 180.02562 * 8 7 6 12 12 C 1.46503 * 119.99774 * 270.00200 * 11 8 7 13 13 C 1.36937 * 120.00017 * 89.99815 * 11 8 7 14 14 H 1.08004 * 119.99671 * 20.63781 * 13 11 8 15 15 C 1.38813 * 119.99854 * 200.63764 * 13 11 8 16 16 N 1.31616 * 120.00158 * 14.70317 * 15 13 11 17 17 Si 1.86803 * 119.99625 * 194.70724 * 15 13 11 18 18 H 1.48500 * 109.47311 * 85.00975 * 17 15 13 19 19 H 1.48504 * 109.46919 * 205.00560 * 17 15 13 20 20 H 1.48496 * 109.47267 * 325.00603 * 17 15 13 21 21 C 1.38268 * 120.11508 * 359.97438 * 6 5 4 22 22 C 1.38146 * 120.05207 * 359.97438 * 21 6 5 23 23 H 1.09010 * 109.46696 * 59.99581 * 1 2 3 24 24 H 1.08996 * 109.47185 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46665 * 300.00225 * 1 2 3 26 26 H 1.07999 * 120.02660 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.97290 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.47140 * 210.00410 * 7 6 5 29 29 H 1.09007 * 109.47237 * 330.00219 * 7 6 5 30 30 H 1.08993 * 109.47384 * 94.95201 * 12 11 8 31 31 H 1.09003 * 109.46615 * 214.95431 * 12 11 8 32 32 H 1.08993 * 109.46864 * 334.94834 * 12 11 8 33 33 H 0.97000 * 120.00078 * 179.97438 * 16 15 13 34 34 H 1.07999 * 119.97350 * 179.97438 * 21 6 5 35 35 H 1.08003 * 120.02443 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3021 3.6757 0.0016 7 6 3.9863 5.0184 0.0089 8 16 4.2667 5.5634 -1.6983 9 8 5.2366 4.7403 -2.3316 10 8 3.0324 5.8636 -2.3351 11 7 5.0158 7.0324 -1.5454 12 6 4.2169 8.2587 -1.4792 13 6 6.3820 7.1009 -1.4806 14 1 6.9818 6.2835 -1.8528 15 6 6.9957 8.2208 -0.9366 16 7 6.2919 9.0780 -0.2280 17 14 8.8206 8.5113 -1.2105 18 1 9.0221 9.2067 -2.5070 19 1 9.3589 9.3505 -0.1099 20 1 9.5316 7.2078 -1.2321 21 6 1.9212 3.6048 0.0021 22 6 1.2917 2.3751 0.0005 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 4.0209 0.3798 -0.0005 27 1 5.1347 2.5749 0.0000 28 1 3.3565 5.7443 0.5233 29 1 4.9425 4.9361 0.5258 30 1 4.0490 8.5271 -0.4363 31 1 4.7493 9.0666 -1.9813 32 1 3.2583 8.0946 -1.9711 33 1 6.7209 9.8604 0.1524 34 1 1.3344 4.5114 0.0038 35 1 0.2130 2.3202 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259897048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:50 Heat of formation + Delta-G solvation = -75.236752 kcal Electronic energy + Delta-G solvation = -20463.891864 eV Core-core repulsion = 17169.018685 eV Total energy + Delta-G solvation = -3294.873179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.98635 -37.51358 -35.73878 -35.67107 -34.46692 -31.80445 -31.55157 -30.87637 -27.83211 -26.49608 -25.79665 -23.54836 -22.48081 -21.10678 -18.43307 -18.05103 -17.05784 -16.56774 -16.16078 -15.74211 -15.59383 -14.83019 -14.66684 -14.51090 -14.01873 -13.73049 -13.37149 -13.22528 -12.84735 -12.52579 -12.05124 -11.86238 -11.73456 -11.51414 -11.37443 -11.10344 -11.09294 -11.02022 -10.74079 -10.65336 -10.60463 -10.19076 -10.15060 -9.79115 -9.35588 -8.82714 -8.22902 -7.73957 -6.64052 -4.04839 1.31072 1.52518 1.85339 3.08784 3.13130 3.16905 3.29259 3.87825 3.95393 4.26294 4.69539 4.86319 4.99046 5.03776 5.05204 5.08258 5.32705 5.33846 5.37591 5.59556 5.64874 5.83304 6.03600 6.23383 6.27505 6.40184 6.47247 6.56942 6.83029 6.87365 6.92716 7.03703 7.18830 7.36596 7.46828 8.21941 8.57703 9.05400 10.31754 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.035139 B = 0.004303 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.653143 B = 6505.179012 C = 6818.007182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.110 3.890 4 C -0.146 4.146 5 C -0.079 4.079 6 C -0.093 4.093 7 C -0.618 4.618 8 S 2.472 3.528 9 O -0.981 6.981 10 O -0.999 6.999 11 N -0.806 5.806 12 C 0.117 3.883 13 C -0.239 4.239 14 H 0.118 0.882 15 C 0.028 3.972 16 N -0.834 5.834 17 Si 0.931 3.069 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.263 1.263 21 C -0.081 4.081 22 C -0.203 4.203 23 H 0.055 0.945 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.276 0.724 34 H 0.129 0.871 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.496 -7.859 3.588 10.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.065 3.935 4 C -0.165 4.165 5 C -0.098 4.098 6 C -0.095 4.095 7 C -0.734 4.734 8 S 2.569 3.431 9 O -0.970 6.970 10 O -0.988 6.988 11 N -0.629 5.629 12 C -0.029 4.029 13 C -0.388 4.388 14 H 0.136 0.864 15 C -0.184 4.184 16 N -0.474 5.474 17 Si 0.756 3.244 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.099 4.099 22 C -0.222 4.222 23 H 0.073 0.927 24 H 0.115 0.885 25 H 0.072 0.928 26 H 0.149 0.851 27 H 0.153 0.847 28 H 0.133 0.867 29 H 0.140 0.860 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.147 0.853 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.889 -8.498 2.931 11.325 hybrid contribution 0.523 0.477 0.928 1.167 sum -6.365 -8.021 3.859 10.943 Atomic orbital electron populations 1.23015 0.78810 1.03545 1.01373 1.86032 1.21075 1.27149 1.89169 1.18986 0.92377 0.83951 0.98186 1.20377 0.91251 0.98471 1.06407 1.21013 1.00448 0.90866 0.97488 1.19292 0.93437 0.93907 1.02886 1.30243 1.07329 1.00815 1.35020 1.14248 0.73437 0.74758 0.80660 1.93342 1.59687 1.69492 1.74504 1.93324 1.46987 1.83280 1.75201 1.54157 1.12514 1.18412 1.77825 1.21347 0.92966 0.87061 1.01537 1.20118 0.80880 1.05430 1.32324 0.86404 1.25773 1.00987 0.97096 0.94553 1.70110 1.37205 1.12074 1.28003 0.85852 0.80906 0.79256 0.78418 1.19664 1.20551 1.18684 1.20940 0.93953 0.97428 0.97621 1.21162 0.99803 0.92206 1.09048 0.92671 0.88514 0.92810 0.85130 0.84677 0.86697 0.86015 0.92821 0.90977 0.93411 0.91353 0.85328 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.38 10.50 -19.41 -0.20 -4.58 16 3 C 0.11 1.71 6.69 -39.22 -0.26 1.44 16 4 C -0.15 -2.34 9.99 -39.43 -0.39 -2.73 16 5 C -0.08 -1.40 9.69 -39.61 -0.38 -1.78 16 6 C -0.09 -1.76 5.14 -104.60 -0.54 -2.30 16 7 C -0.62 -12.22 6.30 36.01 0.23 -11.99 16 8 S 2.47 58.02 5.37 -107.50 -0.58 57.44 16 9 O -0.98 -25.47 16.76 -57.54 -0.96 -26.43 16 10 O -1.00 -25.05 16.53 -57.54 -0.95 -26.00 16 11 N -0.81 -19.43 3.24 -66.69 -0.22 -19.65 16 12 C 0.12 2.63 8.91 59.85 0.53 3.16 16 13 C -0.24 -5.92 9.41 -15.06 -0.14 -6.06 16 14 H 0.12 2.92 7.08 -52.48 -0.37 2.55 16 15 C 0.03 0.67 5.07 -17.43 -0.09 0.58 16 16 N -0.83 -19.82 10.67 55.49 0.59 -19.22 16 17 Si 0.93 18.31 29.58 -169.99 -5.03 13.29 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 21 C -0.08 -1.39 9.69 -39.60 -0.38 -1.78 16 22 C -0.20 -3.09 9.04 -39.43 -0.36 -3.45 16 23 H 0.05 0.48 7.66 -51.92 -0.40 0.08 16 24 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 26 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.14 2.21 8.06 -52.48 -0.42 1.79 16 28 H 0.11 2.11 8.08 -51.92 -0.42 1.69 16 29 H 0.12 2.32 8.08 -51.92 -0.42 1.90 16 30 H 0.05 1.18 7.40 -51.93 -0.38 0.80 16 31 H 0.07 1.63 7.21 -51.93 -0.37 1.26 16 32 H 0.05 1.01 6.82 -51.93 -0.35 0.66 16 33 H 0.28 6.12 8.31 -40.82 -0.34 5.78 16 34 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.13 1.53 6.30 -52.48 -0.33 1.20 16 LS Contribution 310.65 15.07 4.68 4.68 Total: -1.00 -30.12 310.65 -7.74 -37.86 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.28 Total: 6.29 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -0.80 Total: -23.66 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.38 Total: -38.88 kcal Atomic # 8 Polarization: -54.90 SS G_CDS: -2.12 Total: -57.02 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.29 kcal Atomic # 16 Polarization: 58.02 SS G_CDS: -0.58 Total: 57.44 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.12 -7.74 -37.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259897048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.378 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds