Wall clock time and date at job start Tue Mar 31 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42105 * 108.57914 * 2 1 4 4 O 1.42099 * 108.57834 * 228.97322 * 2 1 3 5 5 C 1.81402 * 101.92125 * 114.48866 * 2 1 3 6 6 C 1.53003 * 109.46865 * 180.02562 * 5 2 1 7 7 N 1.46500 * 109.46921 * 179.97438 * 6 5 2 8 8 C 1.39782 * 120.00087 * 180.02562 * 7 6 5 9 9 C 1.38956 * 120.00487 * 359.72338 * 8 7 6 10 10 C 1.38013 * 119.99008 * 179.72309 * 9 8 7 11 11 C 1.38899 * 120.00511 * 0.55423 * 10 9 8 12 12 O 1.35798 * 119.98862 * 179.69977 * 11 10 9 13 13 C 1.34818 * 116.99804 * 174.48089 * 12 11 10 14 14 H 1.07997 * 119.99862 * 5.05034 * 13 12 11 15 15 C 1.38618 * 119.99980 * 185.06170 * 13 12 11 16 16 N 1.31590 * 119.99869 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00105 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47199 * 89.99339 * 17 15 13 19 19 H 1.48493 * 109.47029 * 209.99513 * 17 15 13 20 20 H 1.48504 * 109.46864 * 329.99696 * 17 15 13 21 21 C 1.38893 * 120.01764 * 359.72264 * 11 10 9 22 22 C 1.38018 * 120.00244 * 359.97438 * 21 11 10 23 23 H 1.08999 * 109.46807 * 305.51197 * 1 2 3 24 24 H 1.08995 * 109.47168 * 65.50936 * 1 2 3 25 25 H 1.09004 * 109.46828 * 185.51254 * 1 2 3 26 26 H 1.08999 * 109.47251 * 60.00019 * 5 2 1 27 27 H 1.09002 * 109.46919 * 299.99597 * 5 2 1 28 28 H 1.08999 * 109.47273 * 59.99907 * 6 5 2 29 29 H 1.08997 * 109.47271 * 299.99789 * 6 5 2 30 30 H 0.97006 * 120.00257 * 359.97438 * 7 6 5 31 31 H 1.07998 * 120.00178 * 0.02562 * 9 8 7 32 32 H 1.07995 * 119.99091 * 180.25449 * 10 9 8 33 33 H 0.96997 * 119.99578 * 180.02562 * 16 15 13 34 34 H 1.07997 * 120.00388 * 179.97438 * 21 11 10 35 35 H 1.07998 * 119.99940 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7357 1.6152 6 6 3.7055 -0.8184 1.7984 7 7 4.0081 -1.4120 3.1031 8 6 5.3370 -1.5908 3.4984 9 6 6.3710 -1.2107 2.6514 10 6 7.6828 -1.3820 3.0444 11 6 7.9696 -1.9449 4.2814 12 8 9.2605 -2.1189 4.6651 13 6 9.4713 -2.5631 5.9204 14 1 8.6335 -2.8412 6.5426 15 6 10.7633 -2.6628 6.4126 16 7 11.7841 -2.3242 5.6543 17 14 11.0554 -3.2776 8.1522 18 1 11.2133 -4.7541 8.1354 19 1 12.2880 -2.6541 8.6971 20 1 9.8968 -2.9135 9.0069 21 6 6.9363 -2.3301 5.1258 22 6 5.6241 -2.1533 4.7360 23 1 -0.3633 0.5969 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3633 -1.0230 0.0987 26 1 1.7611 -1.7370 1.6665 27 1 1.7611 -0.1171 2.4042 28 1 4.1328 0.1830 1.7473 29 1 4.1336 -1.4368 1.0094 30 1 3.2864 -1.6804 3.6931 31 1 6.1480 -0.7768 1.6879 32 1 8.4864 -1.0829 2.3878 33 1 12.6882 -2.3943 5.9986 34 1 7.1594 -2.7681 6.0874 35 1 4.8207 -2.4533 5.3924 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325852981.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:41 Heat of formation + Delta-G solvation = -61.009693 kcal Electronic energy + Delta-G solvation = -19299.800420 eV Core-core repulsion = 16005.544173 eV Total energy + Delta-G solvation = -3294.256247 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.06753 -37.35470 -37.29049 -36.39933 -35.04790 -32.20798 -31.13872 -30.21479 -29.97270 -27.00156 -25.20598 -23.65300 -21.74085 -20.72807 -19.25305 -17.83905 -17.48808 -16.76041 -16.70218 -16.63271 -15.86167 -15.14539 -15.12543 -14.44171 -14.02958 -13.72928 -13.69612 -13.54502 -13.48324 -12.82833 -12.66833 -12.45062 -12.43917 -12.34800 -12.32374 -11.64843 -11.52427 -11.39887 -11.38797 -10.94299 -10.92683 -10.58133 -10.36218 -9.27565 -9.20582 -8.47544 -8.18824 -6.45675 -6.32629 -3.90071 -0.48549 2.18901 2.30011 2.53903 3.15467 3.18354 3.19149 3.23799 3.57040 3.82996 4.05735 4.15962 4.22791 4.30628 4.56312 4.67266 4.96379 5.14466 5.19559 5.40265 5.42602 5.45472 5.62899 5.75631 6.17006 6.22183 6.50363 6.84272 6.86928 7.11569 7.30385 7.41695 7.60431 7.89700 8.11558 8.15260 9.13150 9.87218 10.86092 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.054187 B = 0.002668 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.600854 B =10494.008502 C =10818.250027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.430 3.570 3 O -0.934 6.934 4 O -0.934 6.934 5 C -0.628 4.628 6 C 0.146 3.854 7 N -0.755 5.755 8 C 0.116 3.884 9 C -0.145 4.145 10 C -0.150 4.150 11 C 0.116 3.884 12 O -0.187 6.187 13 C -0.387 4.387 14 H 0.088 0.912 15 C 0.036 3.964 16 N -0.868 5.868 17 Si 0.938 3.062 18 H -0.275 1.275 19 H -0.279 1.279 20 H -0.269 1.269 21 C -0.191 4.191 22 C -0.138 4.138 23 H 0.128 0.872 24 H 0.130 0.870 25 H 0.128 0.872 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.393 0.607 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.267 0.733 34 H 0.128 0.872 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.585 2.912 -7.101 24.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.610 3.390 3 O -0.931 6.931 4 O -0.931 6.931 5 C -0.756 4.756 6 C 0.020 3.980 7 N -0.393 5.393 8 C 0.019 3.981 9 C -0.167 4.167 10 C -0.169 4.169 11 C 0.063 3.937 12 O -0.092 6.092 13 C -0.464 4.464 14 H 0.106 0.894 15 C -0.167 4.167 16 N -0.504 5.504 17 Si 0.764 3.236 18 H -0.201 1.201 19 H -0.204 1.204 20 H -0.194 1.194 21 C -0.211 4.211 22 C -0.160 4.160 23 H 0.147 0.853 24 H 0.149 0.851 25 H 0.147 0.853 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.227 0.773 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.491 3.334 -8.024 24.111 hybrid contribution -0.929 -0.749 1.842 2.195 sum -23.420 2.586 -6.181 24.360 Atomic orbital electron populations 1.30277 1.26712 1.11623 1.11910 1.07628 0.78305 0.75806 0.77255 1.93628 1.78902 1.34313 1.86264 1.93626 1.78904 1.67042 1.53545 1.30624 1.06385 1.14484 1.24152 1.20708 0.88962 0.99590 0.88748 1.44014 1.04312 1.72873 1.18072 1.17375 0.83525 1.02560 0.94637 1.20224 0.91418 1.05833 0.99182 1.20041 0.95724 1.05001 0.96171 1.19252 0.85622 0.95296 0.93498 1.83992 1.19102 1.74780 1.31299 1.21236 0.93580 1.43620 0.87994 0.89430 1.25228 0.94404 0.97386 0.99688 1.70054 0.98775 1.45313 1.36292 0.85754 0.78336 0.78795 0.80745 1.20058 1.20394 1.19377 1.20989 0.91726 1.06753 1.01653 1.20208 0.96137 1.04474 0.95194 0.85283 0.85111 0.85283 0.84484 0.84484 0.91318 0.91318 0.77334 0.87014 0.86320 0.92265 0.85414 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.64 10.62 101.05 1.07 -0.57 16 2 S 2.43 15.66 5.36 -107.50 -0.58 15.08 16 3 O -0.93 -9.94 18.10 -57.83 -1.05 -10.99 16 4 O -0.93 -9.92 18.10 -57.83 -1.05 -10.97 16 5 C -0.63 -3.54 5.92 37.16 0.22 -3.32 16 6 C 0.15 1.56 4.92 -4.04 -0.02 1.54 16 7 N -0.75 -9.64 5.74 -58.58 -0.34 -9.98 16 8 C 0.12 2.01 6.66 -83.70 -0.56 1.45 16 9 C -0.14 -2.67 9.31 -39.40 -0.37 -3.04 16 10 C -0.15 -3.24 9.98 -39.42 -0.39 -3.63 16 11 C 0.12 2.85 6.65 -39.09 -0.26 2.59 16 12 O -0.19 -5.45 9.76 -0.06 0.00 -5.45 16 13 C -0.39 -11.04 9.48 30.87 0.29 -10.75 16 14 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 15 C 0.04 1.01 5.49 -17.52 -0.10 0.92 16 16 N -0.87 -26.06 13.67 55.48 0.76 -25.30 16 17 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 C -0.19 -4.19 9.16 -39.42 -0.36 -4.55 16 22 C -0.14 -2.52 9.89 -39.40 -0.39 -2.91 16 23 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 24 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 26 H 0.14 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.14 0.47 8.14 -51.92 -0.42 0.04 16 28 H 0.07 0.77 7.96 -51.93 -0.41 0.35 16 29 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 30 H 0.39 4.04 8.49 -40.82 -0.35 3.70 16 31 H 0.11 1.78 6.73 -52.49 -0.35 1.42 16 32 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -38.32 316.74 -7.54 -45.87 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.19 Total: 3.33 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -0.86 Total: -22.27 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.42 Total: -35.28 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -2.09 Total: -27.41 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 15.66 SS G_CDS: -0.58 Total: 15.08 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -38.32 -7.54 -45.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325852981.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.144 kcal (2) G-P(sol) polarization free energy of solvation -38.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds