Wall clock time and date at job start Tue Mar 31 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42105 * 108.57914 * 2 1 4 4 O 1.42099 * 108.57834 * 228.97322 * 2 1 3 5 5 C 1.81402 * 101.92125 * 114.48866 * 2 1 3 6 6 C 1.53003 * 109.46865 * 180.02562 * 5 2 1 7 7 N 1.46500 * 109.46921 * 179.97438 * 6 5 2 8 8 C 1.39782 * 120.00087 * 180.02562 * 7 6 5 9 9 C 1.38956 * 120.00487 * 359.72338 * 8 7 6 10 10 C 1.38013 * 119.99008 * 179.72309 * 9 8 7 11 11 C 1.38899 * 120.00511 * 0.55423 * 10 9 8 12 12 O 1.35798 * 119.98862 * 179.69977 * 11 10 9 13 13 C 1.34818 * 116.99804 * 174.48089 * 12 11 10 14 14 H 1.07997 * 119.99862 * 5.05034 * 13 12 11 15 15 C 1.38618 * 119.99980 * 185.06170 * 13 12 11 16 16 N 1.31590 * 119.99869 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00105 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47199 * 89.99339 * 17 15 13 19 19 H 1.48493 * 109.47029 * 209.99513 * 17 15 13 20 20 H 1.48504 * 109.46864 * 329.99696 * 17 15 13 21 21 C 1.38893 * 120.01764 * 359.72264 * 11 10 9 22 22 C 1.38018 * 120.00244 * 359.97438 * 21 11 10 23 23 H 1.08999 * 109.46807 * 305.51197 * 1 2 3 24 24 H 1.08995 * 109.47168 * 65.50936 * 1 2 3 25 25 H 1.09004 * 109.46828 * 185.51254 * 1 2 3 26 26 H 1.08999 * 109.47251 * 60.00019 * 5 2 1 27 27 H 1.09002 * 109.46919 * 299.99597 * 5 2 1 28 28 H 1.08999 * 109.47273 * 59.99907 * 6 5 2 29 29 H 1.08997 * 109.47271 * 299.99789 * 6 5 2 30 30 H 0.97006 * 120.00257 * 359.97438 * 7 6 5 31 31 H 1.07998 * 120.00178 * 0.02562 * 9 8 7 32 32 H 1.07995 * 119.99091 * 180.25449 * 10 9 8 33 33 H 0.96997 * 119.99578 * 180.02562 * 16 15 13 34 34 H 1.07997 * 120.00388 * 179.97438 * 21 11 10 35 35 H 1.07998 * 119.99940 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7357 1.6152 6 6 3.7055 -0.8184 1.7984 7 7 4.0081 -1.4120 3.1031 8 6 5.3370 -1.5908 3.4984 9 6 6.3710 -1.2107 2.6514 10 6 7.6828 -1.3820 3.0444 11 6 7.9696 -1.9449 4.2814 12 8 9.2605 -2.1189 4.6651 13 6 9.4713 -2.5631 5.9204 14 1 8.6335 -2.8412 6.5426 15 6 10.7633 -2.6628 6.4126 16 7 11.7841 -2.3242 5.6543 17 14 11.0554 -3.2776 8.1522 18 1 11.2133 -4.7541 8.1354 19 1 12.2880 -2.6541 8.6971 20 1 9.8968 -2.9135 9.0069 21 6 6.9363 -2.3301 5.1258 22 6 5.6241 -2.1533 4.7360 23 1 -0.3633 0.5969 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3633 -1.0230 0.0987 26 1 1.7611 -1.7370 1.6665 27 1 1.7611 -0.1171 2.4042 28 1 4.1328 0.1830 1.7473 29 1 4.1336 -1.4368 1.0094 30 1 3.2864 -1.6804 3.6931 31 1 6.1480 -0.7768 1.6879 32 1 8.4864 -1.0829 2.3878 33 1 12.6882 -2.3943 5.9986 34 1 7.1594 -2.7681 6.0874 35 1 4.8207 -2.4533 5.3924 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325852981.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:41 Heat of formation + Delta-G solvation = -92.371420 kcal Electronic energy + Delta-G solvation = -19301.160367 eV Core-core repulsion = 16005.544173 eV Total energy + Delta-G solvation = -3295.616194 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73842 -38.87170 -37.99097 -37.04717 -36.34340 -34.17000 -32.29486 -31.69581 -30.32112 -28.49899 -27.08300 -24.79254 -23.21874 -22.29894 -19.80833 -19.69148 -18.91856 -18.09605 -17.51392 -17.17871 -16.68291 -16.53780 -16.15774 -15.89082 -15.50295 -15.35087 -15.15673 -14.41638 -14.09700 -13.96743 -13.87449 -13.64705 -13.44154 -13.27561 -13.10779 -13.01817 -12.98205 -12.81411 -12.43904 -12.27274 -12.09940 -12.00393 -11.51410 -11.10478 -10.93440 -10.22917 -9.79957 -8.39297 -7.99195 -6.03585 -0.94917 0.56166 0.89722 1.37197 1.47199 1.55005 1.88845 2.22932 2.49300 2.90289 2.91075 3.14510 3.23973 3.53988 3.66473 3.88704 4.10446 4.15638 4.15822 4.30019 4.38755 4.55060 4.65564 4.65735 4.76656 4.94993 5.03257 5.11650 5.26354 5.43641 5.52130 5.76040 5.94030 6.10797 6.50894 7.02448 7.06548 7.92760 8.85344 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.054187 B = 0.002668 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.600854 B =10494.008502 C =10818.250027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.629 4.629 2 S 2.428 3.572 3 O -0.988 6.988 4 O -0.987 6.987 5 C -0.614 4.614 6 C 0.126 3.874 7 N -0.737 5.737 8 C 0.145 3.855 9 C -0.151 4.151 10 C -0.158 4.158 11 C 0.065 3.935 12 O -0.243 6.243 13 C -0.407 4.407 14 H 0.101 0.899 15 C -0.030 4.030 16 N -0.928 5.928 17 Si 1.019 2.981 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.252 1.252 21 C -0.193 4.193 22 C -0.138 4.138 23 H 0.156 0.844 24 H 0.137 0.863 25 H 0.156 0.844 26 H 0.169 0.831 27 H 0.169 0.831 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.411 0.589 31 H 0.137 0.863 32 H 0.111 0.889 33 H 0.270 0.730 34 H 0.123 0.877 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.377 2.488 -5.992 29.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.783 4.783 2 S 2.614 3.386 3 O -0.985 6.985 4 O -0.985 6.985 5 C -0.743 4.743 6 C 0.000 4.000 7 N -0.375 5.375 8 C 0.044 3.956 9 C -0.174 4.174 10 C -0.178 4.178 11 C 0.015 3.985 12 O -0.151 6.151 13 C -0.483 4.483 14 H 0.118 0.882 15 C -0.226 4.226 16 N -0.568 5.568 17 Si 0.838 3.162 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.176 1.176 21 C -0.213 4.213 22 C -0.160 4.160 23 H 0.175 0.825 24 H 0.155 0.845 25 H 0.175 0.825 26 H 0.187 0.813 27 H 0.187 0.813 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.248 0.752 31 H 0.155 0.845 32 H 0.129 0.871 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -27.352 2.924 -6.957 28.374 hybrid contribution 0.135 -0.542 1.298 1.414 sum -27.217 2.382 -5.659 27.901 Atomic orbital electron populations 1.30041 1.20422 1.14212 1.13611 1.07291 0.80447 0.73999 0.76834 1.93565 1.81338 1.36619 1.86951 1.93564 1.81335 1.67719 1.55841 1.30500 1.02713 1.17053 1.24062 1.20938 0.92922 0.98888 0.87232 1.44068 1.02797 1.71500 1.19099 1.17534 0.85407 0.99100 0.93551 1.20477 0.90411 1.05879 1.00593 1.20218 0.97228 1.04956 0.95394 1.19738 0.85135 0.98241 0.95377 1.83944 1.21741 1.77372 1.31999 1.21784 0.94488 1.43609 0.88430 0.88206 1.26577 0.93749 0.97529 1.04758 1.70217 0.99357 1.48182 1.39002 0.84583 0.78675 0.78435 0.74466 1.18912 1.19873 1.17555 1.21093 0.92796 1.06353 1.01042 1.20519 0.95532 1.03817 0.96102 0.82532 0.84465 0.82521 0.81288 0.81309 0.91996 0.91953 0.75178 0.84539 0.87076 0.92148 0.85962 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.08 10.62 113.37 1.20 1.13 16 2 S 2.43 25.70 5.36 -56.49 -0.30 25.40 16 3 O -0.99 -20.19 18.10 -127.37 -2.31 -22.49 16 4 O -0.99 -20.14 18.10 -127.37 -2.30 -22.44 16 5 C -0.61 -4.16 5.92 71.98 0.43 -3.73 16 6 C 0.13 2.29 4.92 86.38 0.42 2.71 16 7 N -0.74 -15.68 5.74 -339.25 -1.95 -17.63 16 8 C 0.14 4.59 6.66 38.22 0.25 4.84 16 9 C -0.15 -5.47 9.31 22.39 0.21 -5.26 16 10 C -0.16 -7.12 9.98 22.37 0.22 -6.90 16 11 C 0.06 3.34 6.65 22.59 0.15 3.49 16 12 O -0.24 -15.12 9.76 -23.15 -0.23 -15.35 16 13 C -0.41 -24.30 9.48 67.91 0.64 -23.65 16 14 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 15 C -0.03 -1.76 5.49 84.82 0.47 -1.29 16 16 N -0.93 -58.83 13.67 21.61 0.30 -58.53 16 17 Si 1.02 43.92 29.55 68.60 2.03 45.94 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 20 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 21 C -0.19 -8.49 9.16 22.37 0.20 -8.28 16 22 C -0.14 -4.67 9.89 22.39 0.22 -4.45 16 23 H 0.16 -0.70 8.14 -2.39 -0.02 -0.72 16 24 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 25 H 0.16 -0.71 8.14 -2.39 -0.02 -0.73 16 26 H 0.17 0.13 8.14 -2.39 -0.02 0.11 16 27 H 0.17 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.06 1.25 7.96 -2.39 -0.02 1.23 16 29 H 0.06 1.25 7.94 -2.39 -0.02 1.23 16 30 H 0.41 6.09 8.49 -92.70 -0.79 5.30 16 31 H 0.14 4.19 6.73 -2.91 -0.02 4.17 16 32 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 33 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 34 H 0.12 5.40 5.63 -2.91 -0.02 5.39 16 35 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -91.42 316.74 0.00 -91.42 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.33 Total: 15.07 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 4.43 Total: -41.39 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -1.65 Total: -76.16 kcal Atomic # 8 Polarization: -55.44 SS G_CDS: -4.84 Total: -60.28 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 25.70 SS G_CDS: -0.30 Total: 25.40 kcal Total: -91.42 0.00 -91.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325852981.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.947 kcal (2) G-P(sol) polarization free energy of solvation -91.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds