Wall clock time and date at job start Tue Mar 31 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42906 * 113.99812 * 2 1 4 4 C 1.53006 * 109.47260 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47103 * 64.99837 * 4 3 2 6 6 C 1.36930 * 120.00152 * 270.00251 * 5 4 3 7 7 H 1.08007 * 120.00230 * 142.88595 * 6 5 4 8 8 C 1.38812 * 120.00235 * 322.88796 * 6 5 4 9 9 N 1.31622 * 119.99636 * 336.60437 * 8 6 5 10 10 Si 1.86794 * 120.00476 * 156.60914 * 8 6 5 11 11 H 1.48498 * 109.47093 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47222 * 119.99797 * 10 8 6 13 13 H 1.48495 * 109.47523 * 239.99936 * 10 8 6 14 14 C 1.46505 * 119.99669 * 90.00222 * 5 4 3 15 15 C 1.50703 * 109.46956 * 268.12923 * 14 5 4 16 16 C 1.33868 * 124.51330 * 90.00007 * 15 14 5 17 17 C 1.37417 * 115.10508 * 179.97438 * 16 15 14 18 18 C 1.36751 * 113.29276 * 0.02562 * 17 16 15 19 19 C 1.46384 * 125.46380 * 180.02562 * 18 17 16 20 20 O 1.21631 * 120.00087 * 359.97438 * 19 18 17 21 21 O 1.34903 * 120.00060 * 180.02562 * 19 18 17 22 22 S 1.70608 * 124.52348 * 269.96375 * 15 14 5 23 23 H 1.09006 * 109.47518 * 60.00117 * 1 2 3 24 24 H 1.09005 * 109.47041 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47622 * 299.99594 * 1 2 3 26 26 H 1.09000 * 109.46843 * 60.00004 * 3 2 1 27 27 H 1.08997 * 109.47411 * 299.99967 * 3 2 1 28 28 H 1.09001 * 109.46730 * 305.00250 * 4 3 2 29 29 H 1.09003 * 109.47083 * 185.00239 * 4 3 2 30 30 H 0.97005 * 119.99802 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47069 * 148.13802 * 14 5 4 32 32 H 1.08998 * 109.47340 * 28.13229 * 14 5 4 33 33 H 1.07992 * 122.44742 * 359.97438 * 16 15 14 34 34 H 1.08001 * 123.35077 * 179.73897 * 17 16 15 35 35 H 0.96699 * 116.99885 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2508 6 6 4.0978 -0.7973 -1.3344 7 1 3.8303 -1.3082 -2.2476 8 6 4.5645 -1.5207 -0.2455 9 7 5.3062 -0.9304 0.6677 10 14 4.1401 -3.3319 -0.0762 11 1 3.3010 -3.7533 -1.2266 12 1 5.3901 -4.1334 -0.0561 13 1 3.3925 -3.5491 1.1883 14 6 4.2883 1.4000 -2.4130 15 6 3.0552 1.5548 -3.2655 16 6 2.1523 2.5328 -3.1228 17 6 1.1009 2.4891 -4.0065 18 6 1.1721 1.4395 -4.8802 19 6 0.1966 1.1406 -5.9299 20 8 -0.7762 1.8555 -6.0776 21 8 0.3761 0.0715 -6.7329 22 16 2.6243 0.5077 -4.5416 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6884 1.8464 0.8900 27 1 1.6885 1.8465 -0.8899 28 1 3.8507 0.5686 0.8427 29 1 3.9783 2.1767 0.0903 30 1 5.6320 -1.4359 1.4288 31 1 5.0777 0.9287 -2.9983 32 1 4.6224 2.3812 -2.0757 33 1 2.2436 3.3001 -2.3684 34 1 0.2960 3.2092 -4.0077 35 1 -0.2948 -0.0855 -7.4113 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350636025.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:54 Heat of formation + Delta-G solvation = -98.153418 kcal Electronic energy + Delta-G solvation = -20776.346093 eV Core-core repulsion = 17480.479173 eV Total energy + Delta-G solvation = -3295.866920 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.10236 -39.33568 -38.39577 -37.13102 -36.81278 -33.62228 -31.79306 -30.24396 -27.97740 -27.14372 -25.66531 -24.11176 -23.39849 -22.19260 -20.11225 -19.59819 -18.60605 -18.04767 -17.33356 -16.82177 -16.72139 -16.67477 -16.44785 -15.69976 -15.60394 -15.40833 -14.86727 -14.23022 -14.08630 -13.73717 -13.56733 -13.35699 -13.08143 -12.75458 -12.64708 -12.58771 -12.48577 -12.35400 -12.02175 -11.93420 -11.72639 -11.60684 -11.49189 -10.49460 -10.31769 -9.66929 -9.42796 -8.56262 -7.78298 -5.35348 -0.52617 0.59429 1.12336 1.29080 1.45905 1.51718 1.59349 1.98587 2.09702 2.57709 3.21918 3.35254 3.77001 4.02850 4.27778 4.37913 4.42460 4.47072 4.52825 4.66749 4.69624 4.76258 4.81247 4.88228 4.97411 5.02832 5.13429 5.29115 5.46551 5.50601 5.74798 5.80671 6.46229 6.67429 6.91924 7.22229 7.88620 8.38304 9.19437 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.005925 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.061203 B = 4724.750030 C = 4929.445741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.395 6.395 3 C 0.046 3.954 4 C 0.142 3.858 5 N -0.575 5.575 6 C -0.240 4.240 7 H 0.050 0.950 8 C -0.019 4.019 9 N -0.913 5.913 10 Si 0.939 3.061 11 H -0.273 1.273 12 H -0.293 1.293 13 H -0.296 1.296 14 C 0.198 3.802 15 C -0.174 4.174 16 C -0.170 4.170 17 C -0.030 4.030 18 C -0.313 4.313 19 C 0.569 3.431 20 O -0.545 6.545 21 O -0.508 6.508 22 S 0.250 5.750 23 H 0.036 0.964 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.249 0.751 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.781 6.342 -8.713 13.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.314 6.314 3 C -0.032 4.032 4 C 0.016 3.984 5 N -0.294 5.294 6 C -0.370 4.370 7 H 0.067 0.933 8 C -0.216 4.216 9 N -0.558 5.558 10 Si 0.769 3.231 11 H -0.198 1.198 12 H -0.220 1.220 13 H -0.223 1.223 14 C 0.070 3.930 15 C -0.297 4.297 16 C -0.199 4.199 17 C -0.065 4.065 18 C -0.432 4.432 19 C 0.414 3.586 20 O -0.438 6.438 21 O -0.322 6.322 22 S 0.520 5.480 23 H 0.054 0.946 24 H 0.098 0.902 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.175 0.825 34 H 0.178 0.822 35 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -6.838 5.021 -8.945 12.328 hybrid contribution -1.570 0.324 0.677 1.741 sum -8.408 5.345 -8.268 12.947 Atomic orbital electron populations 1.22759 0.82001 1.02351 0.99733 1.88123 1.19129 1.28947 1.95175 1.23393 0.96859 0.84066 0.98892 1.21014 0.89611 0.96627 0.91131 1.43772 1.75411 1.02370 1.07865 1.18907 1.35683 0.82845 0.99614 0.93279 1.25449 0.96801 1.00114 0.99260 1.70109 1.34588 1.37068 1.14012 0.85667 0.77207 0.82835 0.77392 1.19799 1.22004 1.22344 1.19616 0.89342 0.96325 0.87720 1.25906 1.04682 0.98445 1.00700 1.19972 0.94796 1.02172 1.03004 1.20850 0.98425 0.95544 0.91715 1.23555 1.05165 1.07172 1.07295 1.19325 0.82630 0.77464 0.79146 1.90890 1.31169 1.50584 1.71191 1.84597 1.55670 1.45318 1.46657 1.83282 1.13823 1.26487 1.24431 0.94555 0.90236 0.93477 0.94014 0.93045 0.91771 0.92048 0.94213 0.92434 0.89971 0.82497 0.82173 0.70294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 11.01 113.37 1.25 2.16 16 2 O -0.39 -16.82 10.18 -148.98 -1.52 -18.34 16 3 C 0.05 1.74 6.28 71.98 0.45 2.19 16 4 C 0.14 6.12 5.77 86.38 0.50 6.62 16 5 N -0.58 -25.86 2.39 -706.32 -1.69 -27.55 16 6 C -0.24 -12.42 8.95 84.03 0.75 -11.67 16 7 H 0.05 2.59 7.93 -2.91 -0.02 2.57 16 8 C -0.02 -1.02 4.90 84.86 0.42 -0.60 16 9 N -0.91 -51.62 11.57 21.65 0.25 -51.36 16 10 Si 0.94 45.22 29.61 68.60 2.03 47.25 16 11 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 13 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 14 C 0.20 7.24 6.14 85.63 0.53 7.76 16 15 C -0.17 -5.63 5.72 24.69 0.14 -5.49 16 16 C -0.17 -4.80 8.05 21.08 0.17 -4.63 16 17 C -0.03 -0.84 10.01 21.73 0.22 -0.62 16 18 C -0.31 -9.33 6.45 24.04 0.16 -9.18 16 19 C 0.57 16.07 8.30 69.94 0.58 16.65 16 20 O -0.54 -17.44 17.63 19.41 0.34 -17.10 16 21 O -0.51 -11.09 13.29 -58.18 -0.77 -11.86 16 22 S 0.25 7.88 22.87 -56.49 -1.29 6.59 16 23 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.77 5.48 -2.39 -0.01 1.76 16 28 H 0.06 3.32 5.57 -2.39 -0.01 3.31 16 29 H 0.06 2.33 7.88 -2.39 -0.02 2.31 16 30 H 0.25 13.75 8.31 -92.70 -0.77 12.98 16 31 H 0.06 2.17 8.05 -2.39 -0.02 2.15 16 32 H 0.08 2.64 7.87 -2.39 -0.02 2.62 16 33 H 0.16 3.82 7.75 -2.91 -0.02 3.80 16 34 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 35 H 0.43 4.75 9.11 -74.06 -0.67 4.08 16 Total: -1.00 -65.80 319.03 2.96 -62.85 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.45 Total: 6.33 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 5.16 Total: 3.20 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -1.44 Total: -78.91 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -1.95 Total: -47.30 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: 7.88 SS G_CDS: -1.29 Total: 6.59 kcal Total: -65.80 2.96 -62.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350636025.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.305 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds