Wall clock time and date at job start Tue Mar 31 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86805 * 119.99562 * 2 1 4 4 H 1.48495 * 109.46806 * 269.99534 * 3 2 1 5 5 H 1.48498 * 109.47110 * 29.99639 * 3 2 1 6 6 H 1.48498 * 109.46806 * 149.99655 * 3 2 1 7 7 C 1.40232 * 120.00377 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00187 * 178.33707 * 7 2 1 9 9 C 1.41095 * 119.99696 * 358.34085 * 7 2 1 10 10 C 1.40897 * 120.09793 * 213.68804 * 9 7 2 11 11 C 1.36304 * 119.89442 * 180.02562 * 10 9 7 12 12 C 1.40038 * 120.09953 * 359.97438 * 11 10 9 13 13 C 1.47590 * 119.89492 * 179.97438 * 12 11 10 14 14 O 1.21604 * 119.99759 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00223 * 180.02562 * 13 12 11 16 16 C 1.39505 * 119.99791 * 185.77663 * 15 13 12 17 17 C 1.39522 * 120.08431 * 174.47707 * 16 15 13 18 18 C 1.38431 * 117.95383 * 180.02562 * 17 16 15 19 19 C 1.39382 * 117.97910 * 0.02562 * 18 17 16 20 20 O 1.35766 * 120.06039 * 180.02562 * 19 18 17 21 21 N 1.32202 * 119.88105 * 359.97438 * 19 18 17 22 22 N 1.28349 * 122.19737 * 0.02562 * 21 19 18 23 23 C 1.40034 * 120.20951 * 0.26072 * 12 11 10 24 24 C 1.36303 * 120.10633 * 359.47946 * 23 12 11 25 25 H 0.96992 * 120.00445 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.05422 * 359.97438 * 10 9 7 27 27 H 1.07994 * 119.95089 * 179.97438 * 11 10 9 28 28 H 0.96995 * 119.99758 * 5.77530 * 15 13 12 29 29 H 1.07995 * 121.02385 * 0.02562 * 17 16 15 30 30 H 1.07998 * 121.01607 * 180.02562 * 18 17 16 31 31 H 0.96701 * 114.00148 * 269.97196 * 20 19 18 32 32 H 1.08005 * 119.94857 * 179.74158 * 23 12 11 33 33 H 1.07997 * 120.05607 * 180.23192 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5379 1.4403 0.7001 7 6 2.0077 -1.2144 0.0005 8 1 3.0873 -1.2146 -0.0266 9 6 1.3027 -2.4361 0.0365 10 6 1.8448 -3.5450 0.7159 11 6 1.1604 -4.7233 0.7475 12 6 -0.0799 -4.8325 0.1066 13 6 -0.8168 -6.1108 0.1432 14 8 -0.3470 -7.0668 0.7297 15 7 -2.0104 -6.2184 -0.4734 16 6 -2.7624 -7.3857 -0.3384 17 6 -4.0467 -7.4567 -0.8789 18 6 -4.7539 -8.6359 -0.7187 19 6 -4.1392 -9.6782 -0.0270 20 8 -4.7941 -10.8536 0.1543 21 7 -2.9168 -9.5207 0.4513 22 7 -2.2601 -8.4279 0.3034 23 6 -0.6204 -3.7346 -0.5741 24 6 0.0543 -2.5507 -0.6066 25 1 -0.4850 0.8399 -0.0004 26 1 2.8015 -3.4617 1.2101 27 1 1.5753 -5.5740 1.2676 28 1 -2.3465 -5.4844 -1.0109 29 1 -4.4758 -6.6176 -1.4061 30 1 -5.7516 -8.7450 -1.1174 31 1 -5.3201 -10.8898 0.9649 32 1 -1.5753 -3.8247 -1.0705 33 1 -0.3651 -1.7033 -1.1286 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001529647199.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:30 Heat of formation + Delta-G solvation = 15.785333 kcal Electronic energy + Delta-G solvation = -20573.875994 eV Core-core repulsion = 17179.798628 eV Total energy + Delta-G solvation = -3394.077365 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27492 -39.34386 -37.70396 -37.09746 -34.84522 -33.90369 -32.92347 -30.86337 -29.60804 -29.55156 -26.20858 -24.93189 -23.93460 -22.09336 -21.06968 -20.13223 -19.12518 -18.17120 -17.60541 -17.44024 -16.32672 -16.15419 -15.50205 -15.03120 -14.38214 -14.20529 -14.10471 -13.87027 -13.51388 -13.27202 -12.87193 -12.31035 -12.20699 -11.96026 -11.68381 -11.57257 -11.33427 -11.10233 -10.95642 -10.66160 -10.32043 -10.09961 -9.66215 -9.56408 -9.46173 -8.97846 -8.50757 -7.85058 -7.55108 -6.98689 -4.73087 0.69369 0.81351 2.06585 2.87195 2.90676 2.92547 2.93219 2.96689 3.29484 3.55479 3.71568 3.85716 4.27772 4.50437 4.51880 4.60506 4.83881 5.29459 5.41454 5.55762 5.71035 5.84671 5.89910 6.20200 6.55663 6.66503 6.77635 6.89327 7.02218 7.20427 7.33400 7.42309 7.61076 7.77361 7.82331 7.98856 8.32666 8.56108 8.64040 8.67318 8.89962 9.89971 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.046928 B = 0.003060 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.513283 B = 9148.097856 C = 9659.782992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.069 3.931 3 Si 0.921 3.079 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.443 4.443 8 H 0.084 0.916 9 C 0.127 3.873 10 C -0.228 4.228 11 C -0.024 4.024 12 C -0.275 4.275 13 C 0.558 3.442 14 O -0.500 6.500 15 N -0.655 5.655 16 C 0.306 3.694 17 C -0.144 4.144 18 C -0.107 4.107 19 C 0.206 3.794 20 O -0.476 6.476 21 N -0.226 5.226 22 N -0.207 5.207 23 C -0.070 4.070 24 C -0.165 4.165 25 H 0.285 0.715 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.418 0.582 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.745 -5.539 -2.922 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.150 4.150 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.472 4.472 8 H 0.102 0.898 9 C 0.124 3.876 10 C -0.247 4.247 11 C -0.043 4.043 12 C -0.280 4.280 13 C 0.353 3.647 14 O -0.373 6.373 15 N -0.303 5.303 16 C 0.067 3.933 17 C -0.177 4.177 18 C -0.137 4.137 19 C 0.017 3.983 20 O -0.281 6.281 21 N -0.078 5.078 22 N -0.060 5.060 23 C -0.089 4.089 24 C -0.184 4.184 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.256 0.744 29 H 0.172 0.828 30 H 0.173 0.827 31 H 0.255 0.745 32 H 0.107 0.893 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.045 -6.802 -2.182 11.526 hybrid contribution -1.551 1.890 -0.627 2.524 sum -10.596 -4.912 -2.809 12.012 Atomic orbital electron populations 1.69660 1.07662 1.29723 1.34250 1.26083 0.95040 1.01808 0.92035 0.86083 0.80354 0.79600 0.79474 1.19095 1.19953 1.18326 1.19835 0.95165 0.90078 1.42086 0.89775 1.17880 0.91675 0.91874 0.86147 1.20857 1.02120 0.94610 1.07153 1.20394 0.92430 0.96598 0.94892 1.18820 1.00006 0.92438 1.16732 1.18968 0.79000 0.89342 0.77430 1.90812 1.65843 1.39254 1.41427 1.43848 1.20512 1.14564 1.51401 1.20471 0.89652 0.89647 0.93484 1.21926 0.93389 0.99893 1.02461 1.22308 1.01619 0.91569 0.98189 1.20841 0.91773 0.86911 0.98757 1.84832 1.64589 1.31934 1.46718 1.73021 1.05718 1.14733 1.14363 1.73800 1.24482 0.94141 1.13532 1.20530 0.97279 0.93482 0.97614 1.21237 0.97721 0.96380 1.03110 0.90387 0.88011 0.87693 0.74373 0.82759 0.82719 0.74502 0.89274 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.27 10.60 55.56 0.59 -17.68 16 2 C 0.07 1.57 5.40 -17.31 -0.09 1.48 16 3 Si 0.92 16.98 29.56 -169.99 -5.03 11.96 16 4 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 7 C -0.44 -10.65 9.04 -37.75 -0.34 -10.99 16 8 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 9 C 0.13 3.11 5.55 -106.80 -0.59 2.51 16 10 C -0.23 -5.28 9.73 -39.27 -0.38 -5.66 16 11 C -0.02 -0.54 9.52 -39.60 -0.38 -0.92 16 12 C -0.28 -5.94 5.89 -104.73 -0.62 -6.56 16 13 C 0.56 11.52 7.72 -12.45 -0.10 11.43 16 14 O -0.50 -11.93 14.62 5.27 0.08 -11.85 16 15 N -0.66 -10.60 5.34 -12.21 -0.07 -10.66 16 16 C 0.31 4.82 7.51 -154.47 -1.16 3.66 16 17 C -0.14 -1.56 10.06 -39.03 -0.39 -1.95 16 18 C -0.11 -1.06 10.15 -39.08 -0.40 -1.46 16 19 C 0.21 2.64 7.85 -16.97 -0.13 2.51 16 20 O -0.48 -4.90 13.58 -19.01 -0.26 -5.16 16 21 N -0.23 -3.89 11.51 30.52 0.35 -3.54 16 22 N -0.21 -3.95 9.07 31.30 0.28 -3.66 16 23 C -0.07 -1.43 9.47 -39.61 -0.37 -1.81 16 24 C -0.17 -3.83 8.60 -39.27 -0.34 -4.16 16 25 H 0.28 5.98 8.29 -40.82 -0.34 5.64 16 26 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 27 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 28 H 0.42 5.30 6.74 -40.82 -0.27 5.02 16 29 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.40 1.98 9.06 45.56 0.41 2.39 16 32 H 0.09 1.47 6.39 -52.48 -0.34 1.13 16 33 H 0.13 3.10 6.14 -52.49 -0.32 2.78 16 LS Contribution 298.37 15.07 4.50 4.50 Total: -1.00 -31.53 298.37 -6.58 -38.11 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -1.73 Total: 9.91 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -5.30 Total: -11.93 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 1.16 Total: -35.54 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.18 Total: -17.01 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.96 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.53 -6.58 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529647199.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.899 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds