Wall clock time and date at job start Tue Mar 31 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86805 * 119.99562 * 2 1 4 4 H 1.48495 * 109.46806 * 269.99534 * 3 2 1 5 5 H 1.48498 * 109.47110 * 29.99639 * 3 2 1 6 6 H 1.48498 * 109.46806 * 149.99655 * 3 2 1 7 7 C 1.40232 * 120.00377 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00187 * 178.33707 * 7 2 1 9 9 C 1.41095 * 119.99696 * 358.34085 * 7 2 1 10 10 C 1.40897 * 120.09793 * 213.68804 * 9 7 2 11 11 C 1.36304 * 119.89442 * 180.02562 * 10 9 7 12 12 C 1.40038 * 120.09953 * 359.97438 * 11 10 9 13 13 C 1.47590 * 119.89492 * 179.97438 * 12 11 10 14 14 O 1.21604 * 119.99759 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00223 * 180.02562 * 13 12 11 16 16 C 1.39505 * 119.99791 * 185.77663 * 15 13 12 17 17 C 1.39522 * 120.08431 * 174.47707 * 16 15 13 18 18 C 1.38431 * 117.95383 * 180.02562 * 17 16 15 19 19 C 1.39382 * 117.97910 * 0.02562 * 18 17 16 20 20 O 1.35766 * 120.06039 * 180.02562 * 19 18 17 21 21 N 1.32202 * 119.88105 * 359.97438 * 19 18 17 22 22 N 1.28349 * 122.19737 * 0.02562 * 21 19 18 23 23 C 1.40034 * 120.20951 * 0.26072 * 12 11 10 24 24 C 1.36303 * 120.10633 * 359.47946 * 23 12 11 25 25 H 0.96992 * 120.00445 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.05422 * 359.97438 * 10 9 7 27 27 H 1.07994 * 119.95089 * 179.97438 * 11 10 9 28 28 H 0.96995 * 119.99758 * 5.77530 * 15 13 12 29 29 H 1.07995 * 121.02385 * 0.02562 * 17 16 15 30 30 H 1.07998 * 121.01607 * 180.02562 * 18 17 16 31 31 H 0.96701 * 114.00148 * 269.97196 * 20 19 18 32 32 H 1.08005 * 119.94857 * 179.74158 * 23 12 11 33 33 H 1.07997 * 120.05607 * 180.23192 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5379 1.4403 0.7001 7 6 2.0077 -1.2144 0.0005 8 1 3.0873 -1.2146 -0.0266 9 6 1.3027 -2.4361 0.0365 10 6 1.8448 -3.5450 0.7159 11 6 1.1604 -4.7233 0.7475 12 6 -0.0799 -4.8325 0.1066 13 6 -0.8168 -6.1108 0.1432 14 8 -0.3470 -7.0668 0.7297 15 7 -2.0104 -6.2184 -0.4734 16 6 -2.7624 -7.3857 -0.3384 17 6 -4.0467 -7.4567 -0.8789 18 6 -4.7539 -8.6359 -0.7187 19 6 -4.1392 -9.6782 -0.0270 20 8 -4.7941 -10.8536 0.1543 21 7 -2.9168 -9.5207 0.4513 22 7 -2.2601 -8.4279 0.3034 23 6 -0.6204 -3.7346 -0.5741 24 6 0.0543 -2.5507 -0.6066 25 1 -0.4850 0.8399 -0.0004 26 1 2.8015 -3.4617 1.2101 27 1 1.5753 -5.5740 1.2676 28 1 -2.3465 -5.4844 -1.0109 29 1 -4.4758 -6.6176 -1.4061 30 1 -5.7516 -8.7450 -1.1174 31 1 -5.3201 -10.8898 0.9649 32 1 -1.5753 -3.8247 -1.0705 33 1 -0.3651 -1.7033 -1.1286 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001529647199.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:30 Heat of formation + Delta-G solvation = -8.586690 kcal Electronic energy + Delta-G solvation = -20574.932844 eV Core-core repulsion = 17179.798628 eV Total energy + Delta-G solvation = -3395.134215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.37531 -40.80928 -39.08724 -38.36155 -36.20007 -35.61775 -33.90454 -32.38110 -31.32499 -30.94716 -27.86104 -26.03725 -25.07779 -23.62176 -22.78872 -21.61756 -20.05782 -19.47017 -19.25601 -18.73083 -17.63747 -17.17888 -17.11610 -16.26443 -15.92595 -15.75047 -15.20485 -15.10915 -14.83905 -14.58148 -14.46195 -13.92934 -13.64476 -13.35803 -13.15641 -12.85555 -12.75727 -12.61269 -12.41296 -12.20514 -11.75001 -11.39580 -11.22624 -11.18499 -10.87102 -10.22399 -9.77371 -9.58821 -9.31020 -8.67292 -6.52925 -0.24864 -0.18882 0.42797 1.12818 1.41900 1.43090 1.54676 1.73416 2.01474 2.19258 2.45232 2.62803 2.81955 3.26837 3.59059 3.63724 3.81978 4.05043 4.12189 4.29228 4.42178 4.51799 4.81891 4.91109 4.95176 5.05183 5.12574 5.29209 5.39639 5.60207 5.75971 5.89934 6.00677 6.23467 6.35378 6.55908 6.57478 6.79581 6.87082 7.19829 7.78698 8.23941 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.046928 B = 0.003060 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.513283 B = 9148.097856 C = 9659.782992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.034 3.966 3 Si 0.990 3.010 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.476 4.476 8 H 0.082 0.918 9 C 0.100 3.900 10 C -0.241 4.241 11 C -0.037 4.037 12 C -0.279 4.279 13 C 0.562 3.438 14 O -0.541 6.541 15 N -0.642 5.642 16 C 0.278 3.722 17 C -0.120 4.120 18 C -0.090 4.090 19 C 0.217 3.783 20 O -0.480 6.480 21 N -0.282 5.282 22 N -0.266 5.266 23 C -0.056 4.056 24 C -0.184 4.184 25 H 0.294 0.706 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.434 0.566 29 H 0.204 0.796 30 H 0.207 0.793 31 H 0.423 0.577 32 H 0.135 0.865 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.763 -5.007 -4.312 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.183 4.183 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.505 4.505 8 H 0.100 0.900 9 C 0.097 3.903 10 C -0.261 4.261 11 C -0.056 4.056 12 C -0.284 4.284 13 C 0.356 3.644 14 O -0.417 6.417 15 N -0.292 5.292 16 C 0.039 3.961 17 C -0.151 4.151 18 C -0.119 4.119 19 C 0.027 3.973 20 O -0.289 6.289 21 N -0.132 5.132 22 N -0.117 5.117 23 C -0.074 4.074 24 C -0.204 4.204 25 H 0.105 0.895 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.276 0.724 29 H 0.221 0.779 30 H 0.224 0.776 31 H 0.284 0.716 32 H 0.152 0.848 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.118 -6.307 -3.569 14.119 hybrid contribution -0.831 1.488 -0.204 1.717 sum -12.949 -4.819 -3.774 14.322 Atomic orbital electron populations 1.69687 1.08747 1.31059 1.34215 1.26863 0.95837 1.04495 0.91107 0.85053 0.78801 0.75353 0.79707 1.18261 1.19111 1.18563 1.20063 0.95367 0.91052 1.43992 0.89960 1.18221 0.92768 0.92403 0.86867 1.20969 1.02587 0.94838 1.07687 1.20526 0.93326 0.96375 0.95418 1.19070 0.99733 0.93498 1.16090 1.18773 0.80146 0.88233 0.77290 1.90796 1.67280 1.40277 1.43317 1.43376 1.19206 1.15612 1.50957 1.20723 0.91566 0.88838 0.95010 1.22408 0.90757 1.01598 1.00292 1.22799 1.03178 0.89760 0.96213 1.21190 0.90870 0.87961 0.97315 1.84782 1.64613 1.31099 1.48371 1.72853 1.08199 1.14890 1.17290 1.73566 1.26812 0.95573 1.15704 1.20842 0.98446 0.91840 0.96318 1.21274 0.97943 0.97254 1.03901 0.89508 0.87655 0.87926 0.72373 0.77913 0.77624 0.71628 0.84767 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.60 10.60 21.87 0.23 -37.36 16 2 C 0.03 1.52 5.40 85.35 0.46 1.98 16 3 Si 0.99 34.48 29.56 68.60 2.03 36.51 16 4 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 5 H -0.27 -8.86 7.11 99.48 0.71 -8.16 16 6 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 7 C -0.48 -23.50 9.04 23.46 0.21 -23.29 16 8 H 0.08 3.91 7.85 -2.91 -0.02 3.89 16 9 C 0.10 5.04 5.55 -21.28 -0.12 4.92 16 10 C -0.24 -11.65 9.73 22.47 0.22 -11.43 16 11 C -0.04 -1.74 9.52 22.26 0.21 -1.53 16 12 C -0.28 -12.13 5.89 -19.94 -0.12 -12.24 16 13 C 0.56 23.29 7.72 86.71 0.67 23.96 16 14 O -0.54 -26.67 14.62 -4.04 -0.06 -26.73 16 15 N -0.64 -19.71 5.34 -310.79 -1.66 -21.37 16 16 C 0.28 8.29 7.51 133.02 1.00 9.29 16 17 C -0.12 -2.05 10.06 22.63 0.23 -1.82 16 18 C -0.09 -1.35 10.15 22.59 0.23 -1.12 16 19 C 0.22 5.04 7.85 84.91 0.67 5.70 16 20 O -0.48 -8.53 13.58 -90.93 -1.23 -9.76 16 21 N -0.28 -9.66 11.51 -170.21 -1.96 -11.62 16 22 N -0.27 -10.24 9.07 -54.88 -0.50 -10.74 16 23 C -0.06 -2.23 9.47 22.25 0.21 -2.02 16 24 C -0.18 -8.59 8.60 22.47 0.19 -8.40 16 25 H 0.29 12.15 8.29 -92.71 -0.77 11.39 16 26 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 27 H 0.10 4.74 7.63 -2.91 -0.02 4.72 16 28 H 0.43 9.65 6.74 -92.71 -0.62 9.03 16 29 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 30 H 0.21 1.00 8.06 -2.91 -0.02 0.97 16 31 H 0.42 2.92 9.06 -74.06 -0.67 2.25 16 32 H 0.13 4.02 6.39 -2.91 -0.02 4.00 16 33 H 0.13 5.96 6.14 -2.91 -0.02 5.94 16 Total: -1.00 -73.98 298.37 0.82 -73.16 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.10 Total: 23.91 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 4.06 Total: -15.99 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -3.88 Total: -81.10 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.29 Total: -36.49 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Total: -73.98 0.82 -73.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529647199.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.573 kcal (2) G-P(sol) polarization free energy of solvation -73.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds