Wall clock time and date at job start Tue Mar 31 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00047 * 2 1 4 4 H 1.48501 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47218 * 299.99848 * 3 2 1 6 6 H 1.48503 * 109.47225 * 59.99659 * 3 2 1 7 7 C 1.38694 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00389 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00269 * 359.97438 * 7 2 1 10 10 C 1.35514 * 117.00850 * 174.97475 * 9 7 2 11 11 C 1.38840 * 120.15569 * 5.24345 * 10 9 7 12 12 C 1.38031 * 120.06848 * 180.02562 * 11 10 9 13 13 C 1.38570 * 120.40893 * 359.67163 * 12 11 10 14 14 C 1.37829 * 120.32255 * 0.60720 * 13 12 11 15 15 C 1.39679 * 119.91876 * 359.42160 * 14 13 12 16 16 C 1.47494 * 120.20176 * 180.30190 * 15 14 13 17 17 O 1.21591 * 120.00447 * 180.02562 * 16 15 14 18 18 N 1.34776 * 119.99800 * 359.97438 * 16 15 14 19 19 C 1.39492 * 120.00153 * 174.37474 * 18 16 15 20 20 C 1.39661 * 121.09099 * 334.13667 * 19 18 16 21 21 C 1.38306 * 117.88629 * 179.74027 * 20 19 18 22 22 N 1.32052 * 119.93290 * 0.53766 * 21 20 19 23 23 N 1.28308 * 122.38449 * 359.72244 * 22 21 20 24 24 C 1.31812 * 122.25800 * 359.97438 * 23 22 21 25 25 H 0.96996 * 119.99786 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.96433 * 0.02562 * 11 10 9 27 27 H 1.08002 * 119.79445 * 179.97438 * 12 11 10 28 28 H 1.07997 * 119.84314 * 180.32694 * 13 12 11 29 29 H 1.07999 * 120.03667 * 179.70034 * 14 13 12 30 30 H 0.97006 * 119.99905 * 354.37564 * 18 16 15 31 31 H 1.07999 * 121.05750 * 359.96872 * 20 19 18 32 32 H 1.08007 * 120.03248 * 180.23712 * 21 20 19 33 33 H 1.07997 * 120.13790 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3347 -2.3687 0.0016 10 6 2.0686 -3.5030 -0.1037 11 6 3.4555 -3.4395 -0.0970 12 6 4.2013 -4.5960 -0.2049 13 6 3.5746 -5.8271 -0.3136 14 6 2.1988 -5.9088 -0.3278 15 6 1.4308 -4.7471 -0.2200 16 6 -0.0419 -4.8279 -0.2277 17 8 -0.7069 -3.8143 -0.1341 18 7 -0.6505 -6.0252 -0.3396 19 6 -2.0381 -6.1153 -0.2293 20 6 -2.7670 -5.1693 0.4948 21 6 -4.1405 -5.3196 0.5563 22 7 -4.7194 -6.3400 -0.0499 23 7 -4.0532 -7.2142 -0.7118 24 6 -2.7420 -7.1552 -0.8338 25 1 -0.4849 0.8400 -0.0004 26 1 3.9513 -2.4843 -0.0072 27 1 5.2799 -4.5414 -0.1996 28 1 4.1671 -6.7266 -0.3922 29 1 1.7153 -6.8703 -0.4176 30 1 -0.1235 -6.8243 -0.4969 31 1 -2.2741 -4.3445 0.9880 32 1 -4.7384 -4.6059 1.1036 33 1 -2.2155 -7.9101 -1.3987 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535451922.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:54 Heat of formation + Delta-G solvation = 35.194228 kcal Electronic energy + Delta-G solvation = -21321.671631 eV Core-core repulsion = 17928.435899 eV Total energy + Delta-G solvation = -3393.235732 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09608 -39.79046 -38.47814 -36.57738 -35.11618 -32.52792 -32.45282 -31.69584 -30.03248 -29.12467 -25.64108 -24.77124 -24.36946 -22.88172 -21.57702 -20.35304 -18.66879 -18.16992 -17.30424 -16.94302 -16.57110 -16.05165 -14.97728 -14.92092 -14.69531 -14.41005 -14.34709 -14.15826 -13.93581 -13.53435 -13.23598 -12.92177 -12.73869 -11.87420 -11.58348 -11.33315 -11.20171 -11.04811 -10.98690 -10.70774 -10.55767 -10.11533 -9.92878 -9.67826 -9.08598 -9.04178 -8.57509 -8.44076 -7.51894 -6.62298 -4.21798 0.90563 1.07615 1.50920 2.12960 3.02050 3.03015 3.04537 3.09091 3.31543 3.79492 3.80286 4.27432 4.40023 4.57208 4.67712 4.86166 4.97689 5.05600 5.29331 5.31307 5.43877 5.54528 5.66008 5.82293 5.91502 6.05537 6.28495 6.35955 6.46000 6.65414 6.70207 6.86620 7.03191 7.11642 7.48851 7.49873 7.76825 8.53082 8.78020 8.86664 9.45596 10.51107 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.005340 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.904940 B = 5241.980488 C = 6966.430671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.046 3.954 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.403 4.403 8 H 0.097 0.903 9 O -0.122 6.122 10 C 0.190 3.810 11 C -0.233 4.233 12 C -0.046 4.046 13 C -0.228 4.228 14 C -0.036 4.036 15 C -0.236 4.236 16 C 0.553 3.447 17 O -0.474 6.474 18 N -0.671 5.671 19 C 0.170 3.830 20 C -0.141 4.141 21 C 0.064 3.936 22 N -0.276 5.276 23 N -0.229 5.229 24 C 0.004 3.996 25 H 0.273 0.727 26 H 0.134 0.866 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.411 0.589 31 H 0.170 0.830 32 H 0.173 0.827 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -10.152 0.424 10.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.479 4.479 8 H 0.114 0.886 9 O -0.019 6.019 10 C 0.130 3.870 11 C -0.252 4.252 12 C -0.065 4.065 13 C -0.247 4.247 14 C -0.054 4.054 15 C -0.241 4.241 16 C 0.346 3.654 17 O -0.346 6.346 18 N -0.318 5.318 19 C 0.061 3.939 20 C -0.173 4.173 21 C -0.098 4.098 22 N -0.121 5.121 23 N -0.070 5.070 24 C -0.165 4.165 25 H 0.084 0.916 26 H 0.152 0.848 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.248 0.752 31 H 0.187 0.813 32 H 0.190 0.810 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.786 -9.877 0.179 9.909 hybrid contribution 2.335 1.158 0.213 2.615 sum 3.121 -8.719 0.392 9.269 Atomic orbital electron populations 1.70111 1.06051 1.28015 1.41775 1.25424 0.95862 0.99115 0.95894 0.85623 0.79208 0.79949 0.78524 1.18860 1.19870 1.19865 1.21591 0.92055 0.80868 1.53355 0.88571 1.84130 1.33873 1.11160 1.72743 1.19208 0.89946 0.87145 0.90728 1.21186 0.93235 0.99515 1.11313 1.20956 0.98874 0.92236 0.94401 1.20482 0.93946 0.97271 1.12993 1.20750 0.94055 0.95288 0.95338 1.18535 0.90472 0.92543 1.22533 1.18516 0.88507 0.81918 0.76496 1.90939 1.65370 1.33451 1.44853 1.43610 1.03861 1.11761 1.72552 1.18875 0.85318 0.96020 0.93684 1.22698 0.95049 1.01268 0.98244 1.24199 0.93150 0.96181 0.96312 1.72844 1.31398 1.00925 1.06896 1.72836 1.05576 1.18513 1.10081 1.24081 0.92907 0.99354 1.00161 0.91645 0.84827 0.86900 0.86963 0.86971 0.75188 0.81264 0.81024 0.81369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.67 13.67 55.48 0.76 -22.91 16 2 C 0.05 1.20 5.49 -17.52 -0.10 1.11 16 3 Si 0.94 19.48 29.55 -169.99 -5.02 14.45 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.40 -10.72 9.49 30.90 0.29 -10.43 16 8 H 0.10 2.31 5.20 -52.49 -0.27 2.04 16 9 O -0.12 -3.33 7.84 -21.03 -0.16 -3.50 16 10 C 0.19 4.34 6.66 -38.59 -0.26 4.08 16 11 C -0.23 -4.59 9.16 -39.43 -0.36 -4.95 16 12 C -0.05 -0.73 10.03 -39.53 -0.40 -1.13 16 13 C -0.23 -3.31 10.02 -39.61 -0.40 -3.71 16 14 C -0.04 -0.53 9.53 -39.19 -0.37 -0.91 16 15 C -0.24 -4.60 5.89 -104.82 -0.62 -5.22 16 16 C 0.55 10.89 7.58 -12.49 -0.09 10.79 16 17 O -0.47 -11.57 12.49 -16.57 -0.21 -11.78 16 18 N -0.67 -9.80 5.31 -10.61 -0.06 -9.85 16 19 C 0.17 2.57 6.46 -83.42 -0.54 2.03 16 20 C -0.14 -2.30 8.85 -39.03 -0.35 -2.65 16 21 C 0.06 0.95 11.30 -17.43 -0.20 0.75 16 22 N -0.28 -4.47 11.50 30.51 0.35 -4.12 16 23 N -0.23 -3.59 11.49 30.68 0.35 -3.23 16 24 C 0.00 0.05 11.26 -17.14 -0.19 -0.15 16 25 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.13 2.60 5.64 -52.49 -0.30 2.31 16 27 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 28 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.11 1.20 6.42 -52.49 -0.34 0.87 16 30 H 0.41 4.33 6.85 -40.82 -0.28 4.05 16 31 H 0.17 3.12 6.07 -52.49 -0.32 2.80 16 32 H 0.17 2.01 8.06 -52.48 -0.42 1.58 16 33 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 295.62 15.07 4.45 4.45 Total: -1.00 -33.02 295.62 -5.44 -38.46 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -2.33 Total: 8.40 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -3.58 Total: -10.37 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 1.41 Total: -40.12 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.37 Total: -15.28 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.02 -5.44 -38.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535451922.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.655 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds