Wall clock time and date at job start Tue Mar 31 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86804 * 119.99711 * 2 1 4 4 H 1.48500 * 109.46794 * 239.99611 * 3 2 1 5 5 H 1.48499 * 109.47150 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46905 * 119.99964 * 3 2 1 7 7 C 1.39923 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99947 * 175.55935 * 7 2 1 9 9 C 1.41124 * 119.99756 * 355.56940 * 7 2 1 10 10 C 1.40887 * 120.15561 * 214.77928 * 9 7 2 11 11 C 1.36359 * 119.82878 * 180.02562 * 10 9 7 12 12 C 1.39519 * 120.16695 * 359.97438 * 11 10 9 13 13 N 1.39090 * 119.83716 * 179.97438 * 12 11 10 14 14 C 1.34771 * 119.99787 * 35.31774 * 13 12 11 15 15 O 1.21498 * 120.00108 * 355.70288 * 14 13 12 16 16 C 1.48377 * 120.00064 * 175.71135 * 14 13 12 17 17 C 1.39231 * 120.52249 * 179.97438 * 16 14 13 18 18 C 1.39573 * 118.20779 * 180.02562 * 17 16 14 19 19 O 1.35513 * 120.49391 * 179.97438 * 18 17 16 20 20 N 1.32684 * 119.01551 * 359.97438 * 18 17 16 21 21 C 1.31861 * 120.95092 * 0.02562 * 20 18 17 22 22 N 1.31550 * 121.98975 * 0.02562 * 21 20 18 23 23 C 1.39524 * 120.32728 * 0.28085 * 12 11 10 24 24 C 1.36359 * 120.16190 * 359.43984 * 23 12 11 25 25 H 0.96998 * 120.00342 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.09166 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.91607 * 179.97438 * 11 10 9 28 28 H 0.97004 * 119.99915 * 215.30551 * 13 12 11 29 29 H 1.08001 * 120.89687 * 359.74358 * 17 16 14 30 30 H 0.96699 * 113.99473 * 89.99785 * 19 18 17 31 31 H 1.08001 * 119.00792 * 179.97438 * 21 20 18 32 32 H 1.08000 * 119.91793 * 179.72616 * 23 12 11 33 33 H 1.08003 * 120.08520 * 180.27917 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0963 1.6964 -1.2125 5 1 1.2775 2.7465 -0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0083 -1.2117 0.0005 8 1 3.0858 -1.2131 -0.0719 9 6 1.3058 -2.4320 0.0955 10 6 1.8652 -3.5179 0.7975 11 6 1.1809 -4.6941 0.8846 12 6 -0.0704 -4.8236 0.2813 13 7 -0.7622 -6.0267 0.3740 14 6 -0.6801 -6.7663 1.4976 15 8 0.0587 -6.4223 2.3988 16 6 -1.4919 -8.0008 1.6342 17 6 -1.4152 -8.7733 2.7900 18 6 -2.1995 -9.9252 2.8669 19 8 -2.1606 -10.7113 3.9701 20 7 -2.9838 -10.2393 1.8438 21 6 -3.0284 -9.4812 0.7658 22 7 -2.3052 -8.3883 0.6520 23 6 -0.6284 -3.7543 -0.4201 24 6 0.0417 -2.5702 -0.5108 25 1 -0.4850 0.8400 -0.0004 26 1 2.8339 -3.4194 1.2647 27 1 1.6086 -5.5276 1.4221 28 1 -1.3038 -6.3333 -0.3701 29 1 -0.7629 -8.4912 3.6033 30 1 -2.8053 -10.4688 4.6487 31 1 -3.6776 -9.7666 -0.0487 32 1 -1.5955 -3.8633 -0.8884 33 1 -0.3934 -1.7419 -1.0502 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001539049413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:42 Heat of formation + Delta-G solvation = 4.025399 kcal Electronic energy + Delta-G solvation = -20592.017190 eV Core-core repulsion = 17197.429876 eV Total energy + Delta-G solvation = -3394.587314 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.51955 -39.62930 -37.96139 -37.28983 -34.61818 -33.72041 -32.86180 -31.71960 -29.65638 -29.02428 -26.15598 -24.59353 -24.42869 -21.93527 -21.11878 -20.27267 -19.15681 -18.33106 -17.38026 -17.25562 -16.30506 -15.82798 -15.74606 -15.29129 -15.21991 -14.75821 -14.10727 -14.03148 -13.84829 -13.05203 -12.72854 -12.53848 -12.20053 -11.77851 -11.43075 -11.20987 -11.11472 -11.04571 -10.84200 -10.77693 -10.33062 -9.94018 -9.86161 -9.56432 -9.52447 -9.25185 -8.97291 -7.61043 -6.94157 -6.67673 -4.39983 0.24348 0.49659 2.43596 2.85932 2.94526 3.04323 3.06723 3.08789 3.14683 3.32971 3.66130 3.76305 3.93846 4.30046 4.58533 4.64680 4.69786 5.18982 5.25038 5.59292 5.81726 6.15202 6.36202 6.45326 6.66369 6.84434 6.95149 7.00038 7.12206 7.22522 7.57556 7.57896 7.68173 7.76774 7.99742 8.16127 8.24710 8.49605 8.60590 8.86410 8.92737 10.22936 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.046069 B = 0.003056 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.635050 B = 9161.025764 C = 9454.431779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.458 4.458 8 H 0.077 0.923 9 C 0.103 3.897 10 C -0.207 4.207 11 C -0.082 4.082 12 C -0.008 4.008 13 N -0.617 5.617 14 C 0.546 3.454 15 O -0.515 6.515 16 C 0.159 3.841 17 C -0.186 4.186 18 C 0.361 3.639 19 O -0.473 6.473 20 N -0.533 5.533 21 C 0.319 3.681 22 N -0.504 5.504 23 C -0.113 4.113 24 C -0.142 4.142 25 H 0.279 0.721 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.408 0.592 29 H 0.166 0.834 30 H 0.410 0.590 31 H 0.208 0.792 32 H 0.094 0.906 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 -13.232 2.129 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.146 4.146 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.101 3.899 10 C -0.227 4.227 11 C -0.102 4.102 12 C -0.100 4.100 13 N -0.258 5.258 14 C 0.330 3.670 15 O -0.391 6.391 16 C 0.012 3.988 17 C -0.211 4.211 18 C 0.172 3.828 19 O -0.281 6.281 20 N -0.259 5.259 21 C 0.031 3.969 22 N -0.222 5.222 23 C -0.133 4.133 24 C -0.162 4.162 25 H 0.090 0.910 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.243 0.757 29 H 0.184 0.816 30 H 0.270 0.730 31 H 0.224 0.776 32 H 0.112 0.888 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.642 -13.330 1.820 15.004 hybrid contribution 0.059 0.875 0.744 1.150 sum -6.583 -12.455 2.564 14.319 Atomic orbital electron populations 1.69743 1.07327 1.28987 1.37475 1.25908 0.94964 1.01264 0.92472 0.86224 0.79802 0.79964 0.79833 1.18992 1.20387 1.19038 1.19505 0.94816 0.90219 1.44345 0.90495 1.17747 0.92231 0.91987 0.87956 1.20803 1.01326 0.94864 1.05661 1.20406 0.92663 0.97852 0.99252 1.17272 0.94503 0.85648 1.12589 1.42774 1.47011 1.20409 1.15655 1.17711 0.83101 0.82829 0.83388 1.90803 1.38379 1.69624 1.40271 1.21833 0.92748 0.94811 0.89372 1.23031 1.02562 0.94086 1.01387 1.19366 0.89752 0.86018 0.87629 1.84726 1.61082 1.56179 1.26094 1.67909 1.21968 1.33462 1.02527 1.24836 0.93406 0.85166 0.93477 1.68399 1.06828 1.17236 1.29777 1.20328 0.98398 0.92945 1.01643 1.21205 0.97280 0.95576 1.02171 0.90957 0.88426 0.87419 0.75655 0.81594 0.72984 0.77575 0.88812 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.62 10.59 55.55 0.59 -20.03 16 2 C 0.07 1.73 5.42 -17.33 -0.09 1.63 16 3 Si 0.92 18.64 29.56 -169.99 -5.03 13.61 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -11.98 9.02 -37.86 -0.34 -12.33 16 8 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 9 C 0.10 2.72 5.55 -106.80 -0.59 2.12 16 10 C -0.21 -5.12 9.74 -39.26 -0.38 -5.50 16 11 C -0.08 -1.92 8.61 -39.78 -0.34 -2.27 16 12 C -0.01 -0.17 6.30 -83.61 -0.53 -0.70 16 13 N -0.62 -11.13 5.29 -10.45 -0.06 -11.18 16 14 C 0.55 9.69 7.66 -12.09 -0.09 9.60 16 15 O -0.52 -10.69 13.83 5.37 0.07 -10.62 16 16 C 0.16 2.25 6.79 -82.70 -0.56 1.69 16 17 C -0.19 -2.29 9.68 -38.71 -0.37 -2.66 16 18 C 0.36 3.96 7.84 -16.69 -0.13 3.83 16 19 O -0.47 -4.12 13.58 -18.23 -0.25 -4.36 16 20 N -0.53 -5.94 10.45 -14.65 -0.15 -6.09 16 21 C 0.32 3.23 12.27 -92.31 -1.13 2.10 16 22 N -0.50 -6.24 9.70 -11.21 -0.11 -6.35 16 23 C -0.11 -2.54 9.90 -39.78 -0.39 -2.93 16 24 C -0.14 -3.59 8.61 -39.26 -0.34 -3.93 16 25 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 26 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 27 H 0.11 2.47 6.22 -52.48 -0.33 2.14 16 28 H 0.41 6.24 8.20 -40.82 -0.33 5.91 16 29 H 0.17 1.95 7.73 -52.49 -0.41 1.54 16 30 H 0.41 1.35 9.06 45.56 0.41 1.76 16 31 H 0.21 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.13 3.45 6.13 -52.48 -0.32 3.13 16 LS Contribution 299.37 15.07 4.51 4.51 Total: -1.00 -31.04 299.37 -7.51 -38.55 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -1.79 Total: 11.30 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -5.30 Total: -9.34 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.27 Total: -43.65 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.17 Total: -14.98 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.04 -7.51 -38.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539049413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.571 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds