Wall clock time and date at job start Tue Mar 31 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86797 * 119.99950 * 2 1 4 4 H 1.48500 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46815 * 300.00031 * 3 2 1 6 6 H 1.48499 * 109.47069 * 59.99735 * 3 2 1 7 7 C 1.39916 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99701 * 196.71849 * 7 2 1 9 9 C 1.41133 * 120.00296 * 16.71374 * 7 2 1 10 10 C 1.40878 * 120.16158 * 25.49158 * 9 7 2 11 11 C 1.36357 * 119.83098 * 180.23280 * 10 9 7 12 12 C 1.39508 * 120.16664 * 359.52005 * 11 10 9 13 13 N 1.39115 * 119.83959 * 180.25586 * 12 11 10 14 14 C 1.34780 * 119.99678 * 34.38951 * 13 12 11 15 15 O 1.21524 * 120.00003 * 5.11079 * 14 13 12 16 16 C 1.48090 * 119.99982 * 185.11289 * 14 13 12 17 17 C 1.39929 * 121.12382 * 359.71237 * 16 14 13 18 18 N 1.31760 * 119.77790 * 179.71076 * 17 16 14 19 19 N 1.28274 * 122.42398 * 0.59358 * 18 17 16 20 20 C 1.32279 * 122.44424 * 359.70015 * 19 18 17 21 21 O 1.35705 * 120.08118 * 180.02562 * 20 19 18 22 22 C 1.39222 * 119.84251 * 359.97438 * 20 19 18 23 23 C 1.39519 * 120.32751 * 0.23412 * 12 11 10 24 24 C 1.36359 * 120.16653 * 359.97438 * 23 12 11 25 25 H 0.96993 * 119.99958 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.08254 * 0.03422 * 10 9 7 27 27 H 1.08007 * 119.91323 * 179.80357 * 11 10 9 28 28 H 0.96996 * 120.00482 * 214.39224 * 13 12 11 29 29 H 1.07995 * 120.11142 * 359.97438 * 17 16 14 30 30 H 0.96697 * 113.99723 * 269.97541 * 21 20 19 31 31 H 1.07999 * 121.12450 * 179.97438 * 22 20 19 32 32 H 1.07997 * 119.91735 * 180.02562 * 23 12 11 33 33 H 1.08000 * 120.08330 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8839 2.3964 -1.2126 6 1 1.8839 2.3964 1.2125 7 6 2.0083 -1.2117 -0.0005 8 1 3.0540 -1.2316 0.2685 9 6 1.3473 -2.4080 -0.3526 10 6 0.2144 -2.3710 -1.1890 11 6 -0.4218 -3.5304 -1.5210 12 6 0.0525 -4.7521 -1.0427 13 7 -0.5987 -5.9314 -1.3900 14 6 -1.1633 -6.0560 -2.6075 15 8 -1.0243 -5.1765 -3.4346 16 6 -1.9530 -7.2645 -2.9374 17 6 -2.1231 -8.2940 -2.0051 18 7 -2.8359 -9.3551 -2.3247 19 7 -3.3821 -9.4951 -3.4769 20 6 -3.2757 -8.5824 -4.4284 21 8 -3.8740 -8.7798 -5.6303 22 6 -2.5493 -7.4182 -4.1934 23 6 1.1770 -4.7972 -0.2181 24 6 1.8211 -3.6455 0.1258 25 1 -0.4850 0.8400 0.0004 26 1 -0.1512 -1.4264 -1.5637 27 1 -1.2925 -3.5033 -2.1596 28 1 -0.6466 -6.6639 -0.7560 29 1 -1.6753 -8.2172 -1.0254 30 1 -3.3166 -9.2332 -6.2774 31 1 -2.4487 -6.6596 -4.9556 32 1 1.5387 -5.7466 0.1481 33 1 2.6916 -3.6820 0.7639 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001540417468.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:45 Heat of formation + Delta-G solvation = 12.033456 kcal Electronic energy + Delta-G solvation = -20620.561078 eV Core-core repulsion = 17226.321020 eV Total energy + Delta-G solvation = -3394.240059 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.56329 -39.73129 -37.93185 -37.39170 -34.75688 -33.66154 -32.98981 -31.67017 -29.65290 -29.18417 -26.25614 -24.75670 -24.51587 -21.87745 -21.32714 -20.22157 -19.18524 -18.20534 -17.71688 -17.43377 -16.62821 -16.26993 -15.79281 -15.41119 -14.91729 -14.29767 -14.15551 -14.01688 -13.72811 -13.18209 -12.79184 -12.57382 -12.19667 -11.95792 -11.70275 -11.52329 -11.25962 -11.18372 -10.80251 -10.47788 -10.38107 -10.09889 -9.93996 -9.78317 -9.61306 -9.23366 -9.08922 -7.66433 -7.15262 -6.85953 -4.42219 0.03500 0.42307 2.36949 2.76566 2.95195 2.98263 3.02287 3.06550 3.08049 3.27753 3.49182 3.84913 3.89907 4.12735 4.46030 4.51802 4.56991 4.69239 5.30190 5.48663 5.58150 5.61266 6.01545 6.24015 6.56627 6.80168 6.90616 6.93227 7.01165 7.13214 7.43552 7.50384 7.76318 7.93401 7.98663 8.15402 8.26774 8.41508 8.51921 8.75919 8.85318 10.06037 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.039954 B = 0.003158 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.639447 B = 8863.636754 C = 9314.226168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.109 3.891 10 C -0.156 4.156 11 C -0.081 4.081 12 C -0.020 4.020 13 N -0.630 5.630 14 C 0.538 3.462 15 O -0.513 6.513 16 C -0.101 4.101 17 C 0.056 3.944 18 N -0.215 5.215 19 N -0.250 5.250 20 C 0.257 3.743 21 O -0.471 6.471 22 C -0.081 4.081 23 C -0.096 4.096 24 C -0.215 4.215 25 H 0.282 0.718 26 H 0.121 0.879 27 H 0.101 0.899 28 H 0.395 0.605 29 H 0.181 0.819 30 H 0.407 0.593 31 H 0.169 0.831 32 H 0.092 0.908 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.877 -11.500 -4.948 12.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.482 4.482 8 H 0.099 0.901 9 C 0.106 3.894 10 C -0.176 4.176 11 C -0.101 4.101 12 C -0.112 4.112 13 N -0.273 5.273 14 C 0.323 3.677 15 O -0.389 6.389 16 C -0.115 4.115 17 C -0.110 4.110 18 N -0.058 5.058 19 N -0.103 5.103 20 C 0.071 3.929 21 O -0.276 6.276 22 C -0.112 4.112 23 C -0.116 4.116 24 C -0.236 4.236 25 H 0.093 0.907 26 H 0.139 0.861 27 H 0.119 0.881 28 H 0.230 0.770 29 H 0.198 0.802 30 H 0.266 0.734 31 H 0.186 0.814 32 H 0.111 0.889 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.103 -11.859 -4.902 13.472 hybrid contribution 1.144 1.540 -0.327 1.946 sum -2.959 -10.319 -5.229 11.941 Atomic orbital electron populations 1.69838 1.07643 1.29445 1.34178 1.25974 0.94790 1.01564 0.92203 0.86225 0.80969 0.80700 0.78671 1.18301 1.19590 1.19893 1.19640 0.97828 0.91136 1.39555 0.90137 1.17702 0.91281 0.92156 0.88265 1.20978 0.99161 0.96730 1.00700 1.20388 0.99047 0.91288 0.99378 1.17080 0.99135 0.83967 1.10977 1.42797 1.53597 1.17024 1.13840 1.17816 0.81276 0.85727 0.82896 1.90819 1.59708 1.40879 1.47480 1.21454 0.98627 0.96753 0.94648 1.24630 0.95534 0.90094 1.00701 1.73038 1.04786 1.19376 1.08614 1.72769 1.14448 1.25851 0.97218 1.20763 0.91896 0.91142 0.89098 1.84817 1.42868 1.80594 1.19355 1.22795 0.92129 0.98366 0.97876 1.20031 0.94220 0.97323 1.00011 1.20558 1.03572 0.92550 1.06874 0.90675 0.86105 0.88122 0.77027 0.80222 0.73404 0.81354 0.88945 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.68 10.95 55.55 0.61 -19.07 16 2 C 0.07 1.78 5.15 -17.33 -0.09 1.69 16 3 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.45 -11.51 9.04 -37.86 -0.34 -11.85 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 9 C 0.11 2.78 5.57 -106.80 -0.59 2.19 16 10 C -0.16 -3.99 8.63 -39.26 -0.34 -4.33 16 11 C -0.08 -1.91 8.57 -39.79 -0.34 -2.26 16 12 C -0.02 -0.41 6.27 -83.60 -0.52 -0.93 16 13 N -0.63 -10.09 5.26 -10.53 -0.06 -10.14 16 14 C 0.54 8.74 7.52 -12.22 -0.09 8.64 16 15 O -0.51 -10.33 14.20 5.34 0.08 -10.25 16 16 C -0.10 -1.27 5.92 -104.60 -0.62 -1.89 16 17 C 0.06 0.61 10.84 -16.95 -0.18 0.43 16 18 N -0.21 -2.71 11.48 30.79 0.35 -2.36 16 19 N -0.25 -3.25 11.50 30.48 0.35 -2.90 16 20 C 0.26 2.90 7.85 -16.99 -0.13 2.76 16 21 O -0.47 -4.22 13.57 -18.82 -0.26 -4.48 16 22 C -0.08 -0.94 9.72 -38.60 -0.38 -1.32 16 23 C -0.10 -1.96 9.90 -39.78 -0.39 -2.36 16 24 C -0.22 -4.94 9.74 -39.26 -0.38 -5.33 16 25 H 0.28 6.40 8.30 -40.82 -0.34 6.07 16 26 H 0.12 3.22 6.18 -52.49 -0.32 2.90 16 27 H 0.10 2.37 6.46 -52.48 -0.34 2.03 16 28 H 0.39 4.66 6.98 -40.82 -0.28 4.37 16 29 H 0.18 1.37 6.54 -52.49 -0.34 1.02 16 30 H 0.41 1.40 9.06 45.56 0.41 1.81 16 31 H 0.17 1.84 7.79 -52.49 -0.41 1.43 16 32 H 0.09 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -31.23 297.90 -5.55 -36.78 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -1.68 Total: 9.49 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -4.41 Total: -14.54 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 1.26 Total: -34.47 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.18 Total: -14.73 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.23 -5.55 -36.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001540417468.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.818 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds