Wall clock time and date at job start Tue Mar 31 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86797 * 119.99950 * 2 1 4 4 H 1.48500 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46815 * 300.00031 * 3 2 1 6 6 H 1.48499 * 109.47069 * 59.99735 * 3 2 1 7 7 C 1.39916 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99701 * 196.71849 * 7 2 1 9 9 C 1.41133 * 120.00296 * 16.71374 * 7 2 1 10 10 C 1.40878 * 120.16158 * 25.49158 * 9 7 2 11 11 C 1.36357 * 119.83098 * 180.23280 * 10 9 7 12 12 C 1.39508 * 120.16664 * 359.52005 * 11 10 9 13 13 N 1.39115 * 119.83959 * 180.25586 * 12 11 10 14 14 C 1.34780 * 119.99678 * 34.38951 * 13 12 11 15 15 O 1.21524 * 120.00003 * 5.11079 * 14 13 12 16 16 C 1.48090 * 119.99982 * 185.11289 * 14 13 12 17 17 C 1.39929 * 121.12382 * 359.71237 * 16 14 13 18 18 N 1.31760 * 119.77790 * 179.71076 * 17 16 14 19 19 N 1.28274 * 122.42398 * 0.59358 * 18 17 16 20 20 C 1.32279 * 122.44424 * 359.70015 * 19 18 17 21 21 O 1.35705 * 120.08118 * 180.02562 * 20 19 18 22 22 C 1.39222 * 119.84251 * 359.97438 * 20 19 18 23 23 C 1.39519 * 120.32751 * 0.23412 * 12 11 10 24 24 C 1.36359 * 120.16653 * 359.97438 * 23 12 11 25 25 H 0.96993 * 119.99958 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.08254 * 0.03422 * 10 9 7 27 27 H 1.08007 * 119.91323 * 179.80357 * 11 10 9 28 28 H 0.96996 * 120.00482 * 214.39224 * 13 12 11 29 29 H 1.07995 * 120.11142 * 359.97438 * 17 16 14 30 30 H 0.96697 * 113.99723 * 269.97541 * 21 20 19 31 31 H 1.07999 * 121.12450 * 179.97438 * 22 20 19 32 32 H 1.07997 * 119.91735 * 180.02562 * 23 12 11 33 33 H 1.08000 * 120.08330 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8839 2.3964 -1.2126 6 1 1.8839 2.3964 1.2125 7 6 2.0083 -1.2117 -0.0005 8 1 3.0540 -1.2316 0.2685 9 6 1.3473 -2.4080 -0.3526 10 6 0.2144 -2.3710 -1.1890 11 6 -0.4218 -3.5304 -1.5210 12 6 0.0525 -4.7521 -1.0427 13 7 -0.5987 -5.9314 -1.3900 14 6 -1.1633 -6.0560 -2.6075 15 8 -1.0243 -5.1765 -3.4346 16 6 -1.9530 -7.2645 -2.9374 17 6 -2.1231 -8.2940 -2.0051 18 7 -2.8359 -9.3551 -2.3247 19 7 -3.3821 -9.4951 -3.4769 20 6 -3.2757 -8.5824 -4.4284 21 8 -3.8740 -8.7798 -5.6303 22 6 -2.5493 -7.4182 -4.1934 23 6 1.1770 -4.7972 -0.2181 24 6 1.8211 -3.6455 0.1258 25 1 -0.4850 0.8400 0.0004 26 1 -0.1512 -1.4264 -1.5637 27 1 -1.2925 -3.5033 -2.1596 28 1 -0.6466 -6.6639 -0.7560 29 1 -1.6753 -8.2172 -1.0254 30 1 -3.3166 -9.2332 -6.2774 31 1 -2.4487 -6.6596 -4.9556 32 1 1.5387 -5.7466 0.1481 33 1 2.6916 -3.6820 0.7639 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001540417468.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:44 Heat of formation + Delta-G solvation = -12.665594 kcal Electronic energy + Delta-G solvation = -20621.632110 eV Core-core repulsion = 17226.321020 eV Total energy + Delta-G solvation = -3395.311090 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.54285 -41.11995 -39.12284 -38.66665 -36.36112 -35.03027 -34.33356 -32.59365 -31.45269 -30.88587 -27.65324 -25.98659 -25.65222 -23.42847 -22.97733 -21.67025 -20.21112 -19.30552 -19.25300 -18.79062 -17.75120 -17.37728 -17.09572 -16.88349 -16.28026 -15.77296 -15.62775 -15.16911 -14.84850 -14.60039 -14.48718 -13.95441 -13.69066 -13.34884 -13.28881 -12.94176 -12.80647 -12.57844 -12.42756 -11.83493 -11.58118 -11.51887 -11.39611 -11.09362 -10.96784 -10.82207 -10.59384 -9.47395 -8.90907 -8.62914 -6.29491 -0.96592 -0.42899 0.78354 1.14373 1.38431 1.41757 1.54274 1.67429 1.87935 2.20060 2.20727 2.40123 2.73817 3.01203 3.17131 3.39997 3.63878 3.73025 3.92843 4.33922 4.42480 4.45876 4.61942 4.77840 4.92997 5.07821 5.13253 5.26736 5.37459 5.65421 5.81466 6.01374 6.08809 6.30746 6.41769 6.51566 6.66228 6.90901 6.95678 7.16199 7.36467 8.30912 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.039954 B = 0.003158 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.639447 B = 8863.636754 C = 9314.226168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.032 3.968 3 Si 0.982 3.018 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.490 4.490 8 H 0.081 0.919 9 C 0.077 3.923 10 C -0.181 4.181 11 C -0.096 4.096 12 C -0.002 4.002 13 N -0.622 5.622 14 C 0.546 3.454 15 O -0.555 6.555 16 C -0.107 4.107 17 C 0.072 3.928 18 N -0.230 5.230 19 N -0.268 5.268 20 C 0.268 3.732 21 O -0.474 6.474 22 C -0.075 4.075 23 C -0.090 4.090 24 C -0.224 4.224 25 H 0.288 0.712 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.420 0.580 29 H 0.214 0.786 30 H 0.431 0.569 31 H 0.173 0.827 32 H 0.140 0.860 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.607 -13.433 -4.732 14.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.183 4.183 3 Si 0.803 3.197 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.519 4.519 8 H 0.100 0.900 9 C 0.074 3.926 10 C -0.201 4.201 11 C -0.116 4.116 12 C -0.095 4.095 13 N -0.267 5.267 14 C 0.333 3.667 15 O -0.433 6.433 16 C -0.121 4.121 17 C -0.094 4.094 18 N -0.072 5.072 19 N -0.120 5.120 20 C 0.081 3.919 21 O -0.283 6.283 22 C -0.106 4.106 23 C -0.109 4.109 24 C -0.244 4.244 25 H 0.098 0.902 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.259 0.741 29 H 0.231 0.769 30 H 0.294 0.706 31 H 0.190 0.810 32 H 0.158 0.842 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.840 -13.867 -4.684 15.132 hybrid contribution 0.945 1.904 -0.522 2.189 sum -2.894 -11.964 -5.206 13.364 Atomic orbital electron populations 1.69902 1.09089 1.30539 1.35382 1.26810 0.95486 1.04722 0.91303 0.85150 0.79562 0.76169 0.78807 1.17846 1.19338 1.18967 1.19878 0.98122 0.92269 1.41653 0.90048 1.18027 0.91834 0.93662 0.89084 1.20864 1.00465 0.96580 1.02212 1.20442 0.99035 0.92228 0.99852 1.17116 0.98692 0.84600 1.09093 1.42617 1.53171 1.16286 1.14629 1.18236 0.80261 0.86046 0.82188 1.90814 1.60953 1.42747 1.48813 1.21089 0.99422 0.95851 0.95758 1.25017 0.94355 0.88620 1.01395 1.73028 1.05459 1.20022 1.08722 1.72715 1.14954 1.26649 0.97721 1.20689 0.91187 0.90437 0.89598 1.84780 1.43498 1.80997 1.19066 1.22925 0.91534 0.98513 0.97676 1.20413 0.93174 0.98518 0.98841 1.20839 1.04179 0.92518 1.06862 0.90165 0.88538 0.88871 0.74100 0.76917 0.70561 0.80973 0.84249 0.87013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.98 10.95 21.82 0.24 -42.75 16 2 C 0.03 1.59 5.15 85.24 0.44 2.03 16 3 Si 0.98 37.69 29.59 68.60 2.03 39.72 16 4 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 7 C -0.49 -25.76 9.04 23.39 0.21 -25.55 16 8 H 0.08 4.07 7.90 -2.91 -0.02 4.05 16 9 C 0.08 4.03 5.57 -21.28 -0.12 3.91 16 10 C -0.18 -9.69 8.63 22.48 0.19 -9.50 16 11 C -0.10 -4.60 8.57 22.14 0.19 -4.41 16 12 C 0.00 -0.07 6.27 38.60 0.24 0.17 16 13 N -0.62 -18.24 5.26 -305.50 -1.61 -19.85 16 14 C 0.55 16.76 7.52 86.86 0.65 17.42 16 15 O -0.55 -22.16 14.20 -3.79 -0.05 -22.21 16 16 C -0.11 -2.44 5.92 -19.85 -0.12 -2.56 16 17 C 0.07 1.34 10.84 85.11 0.92 2.26 16 18 N -0.23 -5.17 11.48 -56.49 -0.65 -5.82 16 19 N -0.27 -6.34 11.50 -170.30 -1.96 -8.30 16 20 C 0.27 5.43 7.85 84.86 0.67 6.10 16 21 O -0.47 -7.36 13.57 -90.25 -1.23 -8.58 16 22 C -0.08 -1.61 9.72 22.91 0.22 -1.39 16 23 C -0.09 -3.45 9.90 22.14 0.22 -3.23 16 24 C -0.22 -10.14 9.74 22.48 0.22 -9.92 16 25 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 26 H 0.10 5.52 6.18 -2.91 -0.02 5.50 16 27 H 0.09 4.54 6.46 -2.91 -0.02 4.52 16 28 H 0.42 8.14 6.98 -92.71 -0.65 7.49 16 29 H 0.21 2.27 6.54 -2.91 -0.02 2.26 16 30 H 0.43 1.81 9.06 -74.06 -0.67 1.14 16 31 H 0.17 3.53 7.79 -2.91 -0.02 3.51 16 32 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 33 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -70.28 297.90 0.60 -69.67 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.11 Total: 22.79 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 3.94 Total: -24.68 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -3.97 Total: -76.72 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -1.28 Total: -30.80 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Total: -70.28 0.60 -69.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001540417468.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.008 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds