Wall clock time and date at job start Tue Mar 31 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99662 * 2 1 4 4 C 1.52997 * 109.47186 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46648 * 65.00159 * 4 3 2 6 6 C 1.36939 * 119.99639 * 264.34277 * 5 4 3 7 7 H 1.07997 * 119.99407 * 141.93174 * 6 5 4 8 8 C 1.38810 * 120.00109 * 321.92978 * 6 5 4 9 9 N 1.31615 * 120.00459 * 341.27597 * 8 6 5 10 10 Si 1.86808 * 119.99755 * 161.27012 * 8 6 5 11 11 H 1.48503 * 109.46683 * 60.00154 * 10 8 6 12 12 H 1.48496 * 109.47191 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47013 * 300.00407 * 10 8 6 14 14 C 1.46498 * 120.00142 * 84.34976 * 5 4 3 15 15 C 1.50704 * 109.47143 * 88.77222 * 14 5 4 16 16 C 1.37414 * 123.35731 * 265.94430 * 15 14 5 17 17 C 1.33860 * 115.10783 * 180.02562 * 16 15 14 18 18 S 1.70612 * 110.96426 * 359.97438 * 17 16 15 19 19 C 1.36757 * 123.35284 * 85.65145 * 15 14 5 20 20 C 1.46391 * 125.46500 * 359.96561 * 19 15 14 21 21 O 1.21635 * 119.99847 * 2.47841 * 20 19 15 22 22 O 1.34890 * 119.99965 * 182.47808 * 20 19 15 23 23 H 1.08996 * 109.47696 * 299.99879 * 1 2 3 24 24 H 1.09002 * 109.47300 * 60.00721 * 1 2 3 25 25 H 1.09012 * 109.46851 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47315 * 59.99880 * 3 2 1 27 27 H 1.09000 * 109.47180 * 299.99681 * 3 2 1 28 28 H 1.08993 * 109.47399 * 305.00318 * 4 3 2 29 29 H 1.08999 * 109.47167 * 184.99619 * 4 3 2 30 30 H 0.97003 * 120.00293 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.46944 * 208.77324 * 14 5 4 32 32 H 1.09003 * 109.47149 * 328.77604 * 14 5 4 33 33 H 1.08000 * 122.44043 * 359.97344 * 16 15 14 34 34 H 1.08002 * 124.51217 * 179.97438 * 17 16 15 35 35 H 0.96703 * 116.99963 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9765 0.5641 -1.2510 6 6 4.2093 -0.7844 -1.3016 7 1 3.9350 -1.3469 -2.1818 8 6 4.7977 -1.4282 -0.2217 9 7 5.4599 -0.7326 0.6782 10 14 4.6494 -3.2820 -0.0456 11 1 5.2552 -3.9417 -1.2302 12 1 5.3590 -3.7209 1.1828 13 1 3.2158 -3.6570 0.0507 14 6 4.1688 1.3862 -2.4483 15 6 5.5807 1.9125 -2.4748 16 6 5.9383 3.1417 -1.9753 17 6 7.2379 3.4431 -2.0849 18 16 8.0976 2.1745 -2.8349 19 6 6.6347 1.2121 -2.9932 20 6 6.5569 -0.1238 -3.5868 21 8 5.4813 -0.6824 -3.6886 22 8 7.6782 -0.7352 -4.0210 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0278 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8507 0.5687 0.8426 29 1 3.9783 2.1767 0.0901 30 1 5.8714 -1.1825 1.4326 31 1 3.9899 0.7810 -3.3370 32 1 3.4697 2.2223 -2.4311 33 1 5.2229 3.8157 -1.5277 34 1 7.6829 4.3663 -1.7439 35 1 7.5768 -1.6167 -4.4054 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599233166.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:56 Heat of formation + Delta-G solvation = -70.470922 kcal Electronic energy + Delta-G solvation = -21318.025425 eV Core-core repulsion = 18023.358908 eV Total energy + Delta-G solvation = -3294.666517 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.33375 -37.67548 -36.97697 -35.16210 -34.84048 -31.34615 -29.91289 -28.60263 -26.58177 -25.65594 -23.75344 -22.64537 -21.83689 -20.24728 -18.15782 -17.85103 -16.89977 -16.19450 -15.71100 -15.09067 -15.05206 -14.89588 -14.45697 -14.18793 -13.93254 -13.51504 -13.41459 -12.48570 -12.28357 -12.22305 -12.06112 -11.70809 -11.34643 -11.00109 -10.88334 -10.75118 -10.71577 -10.56451 -10.35807 -10.05398 -9.97281 -9.68683 -9.41744 -8.84869 -8.36487 -8.17383 -7.81508 -6.51781 -5.70867 -3.15397 1.09682 2.17544 2.55606 2.99273 3.48044 3.50587 3.56409 3.68094 3.91271 4.61001 4.67437 5.38217 5.46149 5.59111 5.74734 5.80827 5.86905 5.96460 6.05609 6.08251 6.13550 6.27617 6.33981 6.48861 6.57290 6.71995 6.85266 6.99555 7.10169 7.32162 7.64480 8.02443 8.06084 8.62055 8.74603 9.28182 9.86337 10.41531 11.31514 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.007755 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.643383 B = 3609.905286 C = 4547.813230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.357 6.357 3 C 0.047 3.953 4 C 0.144 3.856 5 N -0.551 5.551 6 C -0.200 4.200 7 H 0.075 0.925 8 C 0.005 3.995 9 N -0.891 5.891 10 Si 0.899 3.101 11 H -0.284 1.284 12 H -0.294 1.294 13 H -0.281 1.281 14 C 0.180 3.820 15 C -0.018 4.018 16 C -0.135 4.135 17 C -0.239 4.239 18 S 0.166 5.834 19 C -0.243 4.243 20 C 0.550 3.450 21 O -0.475 6.475 22 O -0.530 6.530 23 H 0.026 0.974 24 H 0.029 0.971 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.029 0.971 28 H 0.106 0.894 29 H 0.040 0.960 30 H 0.253 0.747 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.134 0.866 34 H 0.158 0.842 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 7.208 -5.117 8.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C -0.032 4.032 4 C 0.017 3.983 5 N -0.268 5.268 6 C -0.331 4.331 7 H 0.092 0.908 8 C -0.194 4.194 9 N -0.534 5.534 10 Si 0.729 3.271 11 H -0.210 1.210 12 H -0.220 1.220 13 H -0.207 1.207 14 C 0.052 3.948 15 C -0.036 4.036 16 C -0.168 4.168 17 C -0.377 4.377 18 S 0.434 5.566 19 C -0.363 4.363 20 C 0.393 3.607 21 O -0.362 6.362 22 O -0.342 6.342 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.093 0.907 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.123 0.877 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.152 0.848 34 H 0.175 0.825 35 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.666 6.999 -5.192 8.872 hybrid contribution -1.609 -0.878 0.730 1.973 sum 0.057 6.121 -4.462 7.575 Atomic orbital electron populations 1.22631 0.84093 1.01532 0.98427 1.88203 1.16707 1.27712 1.94841 1.23385 0.98664 0.84166 0.97032 1.21054 0.87385 0.97052 0.92779 1.44102 1.72560 1.03969 1.06148 1.19240 1.30224 0.81849 1.01815 0.90773 1.25196 0.96836 0.97803 0.99530 1.69944 1.34450 1.34873 1.14163 0.86408 0.77965 0.85970 0.76714 1.21036 1.21978 1.20676 1.20202 0.86859 0.94009 0.93691 1.20697 1.00113 0.91098 0.91723 1.19835 0.95595 0.97591 1.03785 1.25112 0.98993 1.04868 1.08724 1.82746 1.11180 1.06881 1.55839 1.22863 0.97213 0.98439 1.17743 1.19282 0.81396 0.84622 0.75413 1.90952 1.28962 1.64352 1.51922 1.84565 1.38483 1.36263 1.74891 0.95533 0.95218 0.90695 0.95505 0.95278 0.87683 0.94203 0.93726 0.90413 0.93921 0.84848 0.82477 0.73708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.83 10.45 -35.23 -0.37 -8.20 16 3 C 0.05 0.93 6.28 37.16 0.23 1.16 16 4 C 0.14 3.31 5.62 -4.04 -0.02 3.29 16 5 N -0.55 -13.55 2.36 -174.61 -0.41 -13.97 16 6 C -0.20 -5.52 7.61 -15.06 -0.11 -5.63 16 7 H 0.07 2.16 6.73 -52.49 -0.35 1.81 16 8 C 0.01 0.15 4.96 -17.43 -0.09 0.07 16 9 N -0.89 -25.78 11.42 55.49 0.63 -25.15 16 10 Si 0.90 22.86 29.59 -169.99 -5.03 17.83 16 11 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 14 C 0.18 3.88 5.50 -5.19 -0.03 3.86 16 15 C -0.02 -0.38 5.49 -105.46 -0.58 -0.95 16 16 C -0.14 -2.38 9.96 -41.42 -0.41 -2.79 16 17 C -0.24 -3.78 10.92 29.19 0.32 -3.46 16 18 S 0.17 2.79 22.92 -107.50 -2.46 0.33 16 19 C -0.24 -5.01 6.45 -36.84 -0.24 -5.24 16 20 C 0.55 11.64 8.29 34.01 0.28 11.92 16 21 O -0.47 -11.18 12.18 -19.37 -0.24 -11.42 16 22 O -0.53 -9.20 13.29 -41.01 -0.54 -9.75 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.03 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.11 2.81 5.53 -51.93 -0.29 2.52 16 29 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.08 1.78 6.13 -51.93 -0.32 1.46 16 32 H 0.04 0.81 8.01 -51.93 -0.42 0.39 16 33 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 34 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.41 5.15 9.11 45.56 0.42 5.57 16 LS Contribution 314.34 15.07 4.74 4.74 Total: -1.00 -32.57 314.34 -6.69 -39.26 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -3.47 Total: 2.49 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 0.47 Total: 3.83 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.22 Total: -39.12 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -1.15 Total: -29.36 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.83 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.46 Total: 0.33 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.57 -6.69 -39.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599233166.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.213 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds