Wall clock time and date at job start Tue Mar 31 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99662 * 2 1 4 4 C 1.52997 * 109.47186 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46648 * 65.00159 * 4 3 2 6 6 C 1.36939 * 119.99639 * 264.34277 * 5 4 3 7 7 H 1.07997 * 119.99407 * 141.93174 * 6 5 4 8 8 C 1.38810 * 120.00109 * 321.92978 * 6 5 4 9 9 N 1.31615 * 120.00459 * 341.27597 * 8 6 5 10 10 Si 1.86808 * 119.99755 * 161.27012 * 8 6 5 11 11 H 1.48503 * 109.46683 * 60.00154 * 10 8 6 12 12 H 1.48496 * 109.47191 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47013 * 300.00407 * 10 8 6 14 14 C 1.46498 * 120.00142 * 84.34976 * 5 4 3 15 15 C 1.50704 * 109.47143 * 88.77222 * 14 5 4 16 16 C 1.37414 * 123.35731 * 265.94430 * 15 14 5 17 17 C 1.33860 * 115.10783 * 180.02562 * 16 15 14 18 18 S 1.70612 * 110.96426 * 359.97438 * 17 16 15 19 19 C 1.36757 * 123.35284 * 85.65145 * 15 14 5 20 20 C 1.46391 * 125.46500 * 359.96561 * 19 15 14 21 21 O 1.21635 * 119.99847 * 2.47841 * 20 19 15 22 22 O 1.34890 * 119.99965 * 182.47808 * 20 19 15 23 23 H 1.08996 * 109.47696 * 299.99879 * 1 2 3 24 24 H 1.09002 * 109.47300 * 60.00721 * 1 2 3 25 25 H 1.09012 * 109.46851 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47315 * 59.99880 * 3 2 1 27 27 H 1.09000 * 109.47180 * 299.99681 * 3 2 1 28 28 H 1.08993 * 109.47399 * 305.00318 * 4 3 2 29 29 H 1.08999 * 109.47167 * 184.99619 * 4 3 2 30 30 H 0.97003 * 120.00293 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.46944 * 208.77324 * 14 5 4 32 32 H 1.09003 * 109.47149 * 328.77604 * 14 5 4 33 33 H 1.08000 * 122.44043 * 359.97344 * 16 15 14 34 34 H 1.08002 * 124.51217 * 179.97438 * 17 16 15 35 35 H 0.96703 * 116.99963 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9765 0.5641 -1.2510 6 6 4.2093 -0.7844 -1.3016 7 1 3.9350 -1.3469 -2.1818 8 6 4.7977 -1.4282 -0.2217 9 7 5.4599 -0.7326 0.6782 10 14 4.6494 -3.2820 -0.0456 11 1 5.2552 -3.9417 -1.2302 12 1 5.3590 -3.7209 1.1828 13 1 3.2158 -3.6570 0.0507 14 6 4.1688 1.3862 -2.4483 15 6 5.5807 1.9125 -2.4748 16 6 5.9383 3.1417 -1.9753 17 6 7.2379 3.4431 -2.0849 18 16 8.0976 2.1745 -2.8349 19 6 6.6347 1.2121 -2.9932 20 6 6.5569 -0.1238 -3.5868 21 8 5.4813 -0.6824 -3.6886 22 8 7.6782 -0.7352 -4.0210 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0278 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8507 0.5687 0.8426 29 1 3.9783 2.1767 0.0901 30 1 5.8714 -1.1825 1.4326 31 1 3.9899 0.7810 -3.3370 32 1 3.4697 2.2223 -2.4311 33 1 5.2229 3.8157 -1.5277 34 1 7.6829 4.3663 -1.7439 35 1 7.5768 -1.6167 -4.4054 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599233166.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:56 Heat of formation + Delta-G solvation = -93.080295 kcal Electronic energy + Delta-G solvation = -21319.005841 eV Core-core repulsion = 18023.358908 eV Total energy + Delta-G solvation = -3295.646933 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92680 -39.22924 -38.48760 -36.75125 -36.56792 -33.27524 -31.43932 -30.19829 -28.32717 -27.08601 -25.48318 -24.25276 -23.32549 -21.97464 -19.64006 -19.41948 -18.72386 -17.79553 -17.26199 -16.71202 -16.59554 -16.48765 -16.24230 -15.67038 -15.41337 -15.33271 -15.09105 -14.01073 -13.90283 -13.71029 -13.51793 -13.39912 -12.90436 -12.74878 -12.62817 -12.48676 -12.40585 -12.17703 -12.04099 -11.88173 -11.65007 -11.47951 -11.11932 -10.40254 -10.32238 -9.63105 -9.21959 -8.43631 -7.71829 -5.23535 -0.34396 0.74456 1.14896 1.41809 1.44865 1.50247 1.54291 2.13413 2.41499 2.60451 3.23048 3.43665 3.84210 4.15744 4.34185 4.44596 4.52650 4.56501 4.64528 4.71463 4.76297 4.79169 4.84158 4.90015 5.00903 5.12292 5.21450 5.50637 5.66337 5.76083 5.81069 5.93966 6.54119 6.72020 7.19932 7.31719 7.95807 8.45789 9.26933 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.007755 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.643383 B = 3609.905286 C = 4547.813230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.054 3.946 4 C 0.145 3.855 5 N -0.569 5.569 6 C -0.193 4.193 7 H 0.047 0.953 8 C -0.036 4.036 9 N -0.919 5.919 10 Si 0.936 3.064 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.286 1.286 14 C 0.184 3.816 15 C -0.025 4.025 16 C -0.158 4.158 17 C -0.216 4.216 18 S 0.223 5.777 19 C -0.285 4.285 20 C 0.545 3.455 21 O -0.508 6.508 22 O -0.520 6.520 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.244 0.756 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.157 0.843 34 H 0.201 0.799 35 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 9.627 -5.504 11.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.025 4.025 4 C 0.019 3.981 5 N -0.287 5.287 6 C -0.324 4.324 7 H 0.064 0.936 8 C -0.231 4.231 9 N -0.566 5.566 10 Si 0.766 3.234 11 H -0.213 1.213 12 H -0.220 1.220 13 H -0.213 1.213 14 C 0.056 3.944 15 C -0.043 4.043 16 C -0.189 4.189 17 C -0.353 4.353 18 S 0.491 5.509 19 C -0.404 4.404 20 C 0.389 3.611 21 O -0.398 6.398 22 O -0.334 6.334 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.174 0.826 34 H 0.218 0.782 35 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 2.424 9.419 -5.615 11.231 hybrid contribution -1.716 -1.439 0.602 2.319 sum 0.708 7.980 -5.014 9.451 Atomic orbital electron populations 1.22811 0.81465 1.02550 1.00132 1.88130 1.19753 1.29014 1.95221 1.23243 0.96556 0.83918 0.98743 1.20949 0.89544 0.96546 0.91039 1.43955 1.74298 1.03512 1.06926 1.18921 1.29406 0.83629 1.00491 0.93575 1.25516 0.97798 0.99741 1.00085 1.70047 1.36706 1.35030 1.14804 0.85830 0.77345 0.83915 0.76283 1.21270 1.21999 1.21265 1.20029 0.88604 0.94078 0.91650 1.20799 0.99099 0.92624 0.91801 1.19992 0.97098 0.96988 1.04840 1.25695 0.98256 1.05655 1.05741 1.82570 1.08378 1.05715 1.54235 1.23271 0.99839 0.98806 1.18461 1.19596 0.81510 0.85063 0.74913 1.90942 1.30309 1.65385 1.53158 1.84508 1.36814 1.37627 1.74472 0.93332 0.93810 0.90182 0.93064 0.93921 0.91429 0.92935 0.94722 0.92582 0.91360 0.82568 0.78155 0.71457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.40 -17.59 10.45 -148.98 -1.56 -19.14 16 3 C 0.05 2.09 6.28 71.98 0.45 2.54 16 4 C 0.15 6.69 5.62 86.38 0.49 7.17 16 5 N -0.57 -28.27 2.36 -706.34 -1.67 -29.94 16 6 C -0.19 -10.97 7.61 84.03 0.64 -10.33 16 7 H 0.05 2.84 6.73 -2.91 -0.02 2.82 16 8 C -0.04 -2.10 4.96 84.86 0.42 -1.68 16 9 N -0.92 -54.77 11.42 21.65 0.25 -54.52 16 10 Si 0.94 48.49 29.59 68.60 2.03 50.52 16 11 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 12 H -0.29 -15.02 7.11 99.48 0.71 -14.31 16 13 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 14 C 0.18 7.89 5.50 85.63 0.47 8.36 16 15 C -0.02 -0.98 5.49 -20.40 -0.11 -1.10 16 16 C -0.16 -5.02 9.96 21.08 0.21 -4.81 16 17 C -0.22 -5.80 10.92 66.82 0.73 -5.07 16 18 S 0.22 6.72 22.92 -56.49 -1.30 5.43 16 19 C -0.28 -11.40 6.45 24.05 0.16 -11.24 16 20 C 0.55 23.07 8.29 69.94 0.58 23.65 16 21 O -0.51 -24.63 12.18 19.40 0.24 -24.40 16 22 O -0.52 -17.59 13.29 -58.04 -0.77 -18.36 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.04 1.51 8.09 -2.39 -0.02 1.49 16 28 H 0.07 3.70 5.53 -2.39 -0.01 3.69 16 29 H 0.05 2.20 8.11 -2.39 -0.02 2.18 16 30 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 31 H 0.06 2.63 6.13 -2.39 -0.01 2.61 16 32 H 0.07 2.49 8.01 -2.39 -0.02 2.48 16 33 H 0.16 4.22 8.06 -2.91 -0.02 4.19 16 34 H 0.20 3.67 8.06 -2.91 -0.02 3.64 16 35 H 0.43 10.46 9.11 -74.06 -0.67 9.79 16 Total: -1.00 -73.13 314.34 2.95 -70.19 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.45 Total: 10.61 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 5.28 Total: 9.61 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -1.42 Total: -84.45 kcal Atomic # 8 Polarization: -59.81 SS G_CDS: -2.09 Total: -61.90 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Atomic # 16 Polarization: 6.72 SS G_CDS: -1.30 Total: 5.43 kcal Total: -73.13 2.95 -70.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599233166.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.894 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds