Wall clock time and date at job start Tue Mar 31 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00041 * 2 1 4 4 C 1.53001 * 109.47152 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47013 * 65.00637 * 4 3 2 6 6 C 1.36934 * 120.00022 * 84.55888 * 5 4 3 7 7 H 1.07995 * 119.99942 * 41.55161 * 6 5 4 8 8 C 1.38813 * 119.99544 * 221.27791 * 6 5 4 9 9 N 1.31614 * 120.00411 * 18.69287 * 8 6 5 10 10 Si 1.86801 * 119.99788 * 198.70170 * 8 6 5 11 11 H 1.48503 * 109.47563 * 89.99653 * 10 8 6 12 12 H 1.48504 * 109.47085 * 209.99810 * 10 8 6 13 13 H 1.48502 * 109.47240 * 329.99737 * 10 8 6 14 14 C 1.46502 * 119.99814 * 264.55855 * 5 4 3 15 15 C 1.50709 * 109.47062 * 269.99972 * 14 5 4 16 16 C 1.33853 * 122.44441 * 269.70701 * 15 14 5 17 17 S 1.70611 * 110.96140 * 179.88943 * 16 15 14 18 18 C 1.75834 * 91.56604 * 0.31449 * 17 16 15 19 19 C 1.46391 * 125.46270 * 179.78742 * 18 17 16 20 20 O 1.21625 * 119.99861 * 180.02562 * 19 18 17 21 21 O 1.34898 * 120.00116 * 0.03976 * 19 18 17 22 22 C 1.36753 * 109.07172 * 359.82516 * 18 17 16 23 23 H 1.08997 * 109.47213 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47087 * 299.99799 * 1 2 3 25 25 H 1.09000 * 109.47065 * 59.99757 * 1 2 3 26 26 H 1.09001 * 109.47034 * 60.00386 * 3 2 1 27 27 H 1.08995 * 109.47591 * 300.00227 * 3 2 1 28 28 H 1.09001 * 109.47485 * 304.99957 * 4 3 2 29 29 H 1.09007 * 109.46965 * 185.00448 * 4 3 2 30 30 H 0.97000 * 120.00154 * 179.97438 * 9 8 6 31 31 H 1.09007 * 109.46967 * 29.99730 * 14 5 4 32 32 H 1.08997 * 109.47520 * 150.00101 * 14 5 4 33 33 H 1.07998 * 124.51721 * 359.97438 * 16 15 14 34 34 H 0.96695 * 116.99766 * 180.02562 * 21 19 18 35 35 H 1.08001 * 123.35547 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1587 1.3341 -2.3706 7 1 4.6336 2.3005 -2.2889 8 6 3.7389 0.8693 -3.6094 9 7 2.8579 -0.1057 -3.6826 10 14 4.4245 1.6278 -5.1728 11 1 5.6450 0.8901 -5.5870 12 1 3.4065 1.5452 -6.2508 13 1 4.7671 3.0511 -4.9235 14 6 4.2200 -0.8789 -1.3091 15 6 5.6587 -1.1588 -0.9585 16 6 6.6265 -1.2075 -1.8820 17 16 8.1383 -1.5406 -1.1648 18 6 7.4151 -1.6225 0.4359 19 6 8.1355 -1.8977 1.6802 20 8 7.5336 -1.9316 2.7366 21 8 9.4669 -2.1134 1.6553 22 6 6.0718 -1.3886 0.3318 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8515 0.5682 0.8409 29 1 3.9785 2.1766 0.0890 30 1 2.5643 -0.4302 -4.5483 31 1 3.5675 -1.3858 -0.5981 32 1 4.0137 -1.2434 -2.3154 33 1 6.4712 -1.0548 -2.9398 34 1 9.8986 -2.2915 2.5020 35 1 5.4023 -1.3845 1.1793 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599233765.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:59 Heat of formation + Delta-G solvation = -82.026642 kcal Electronic energy + Delta-G solvation = -20474.356581 eV Core-core repulsion = 17179.188970 eV Total energy + Delta-G solvation = -3295.167610 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.90754 -37.95236 -37.00771 -35.90647 -34.82920 -31.56471 -30.22816 -28.37163 -26.30710 -25.58794 -24.81137 -23.24594 -21.25120 -20.08067 -18.81028 -18.10443 -17.26841 -16.57567 -15.58679 -15.50617 -15.41865 -15.14826 -14.76225 -14.18566 -13.95964 -13.63686 -13.41570 -12.87977 -12.40145 -12.32246 -12.10263 -11.65120 -11.48017 -11.30091 -11.18027 -11.00827 -10.80031 -10.70311 -10.55469 -10.33456 -10.09904 -9.98041 -9.88122 -8.80956 -8.56268 -8.42302 -7.90356 -6.57807 -5.84245 -3.46238 0.80726 1.93170 2.41119 2.66175 3.15994 3.27963 3.37024 3.37683 3.40672 4.40917 4.65870 5.26951 5.43245 5.54210 5.69980 5.77340 5.84433 5.92803 5.98353 6.15573 6.21147 6.27408 6.33959 6.46698 6.51765 6.61966 6.66201 6.87511 6.97127 7.24639 7.62150 7.76614 7.97278 8.02659 8.48821 9.12846 9.72526 10.36163 11.14476 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.014386 B = 0.006276 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.838199 B = 4460.156892 C = 5969.945741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.373 6.373 3 C 0.048 3.952 4 C 0.148 3.852 5 N -0.565 5.565 6 C -0.263 4.263 7 H 0.058 0.942 8 C 0.020 3.980 9 N -0.873 5.873 10 Si 0.891 3.109 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.202 3.798 15 C -0.122 4.122 16 C -0.194 4.194 17 S 0.181 5.819 18 C -0.289 4.289 19 C 0.562 3.438 20 O -0.518 6.518 21 O -0.516 6.516 22 C -0.013 4.013 23 H 0.073 0.927 24 H 0.024 0.976 25 H 0.035 0.965 26 H 0.021 0.979 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.255 0.745 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.167 0.833 34 H 0.411 0.589 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.032 -2.800 6.291 9.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.291 6.291 3 C -0.031 4.031 4 C 0.021 3.979 5 N -0.283 5.283 6 C -0.393 4.393 7 H 0.075 0.925 8 C -0.182 4.182 9 N -0.514 5.514 10 Si 0.720 3.280 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.202 1.202 14 C 0.074 3.926 15 C -0.136 4.136 16 C -0.332 4.332 17 S 0.449 5.551 18 C -0.407 4.407 19 C 0.407 3.593 20 O -0.409 6.409 21 O -0.328 6.328 22 C -0.049 4.049 23 H 0.092 0.908 24 H 0.043 0.957 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.185 0.815 34 H 0.269 0.731 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.179 -3.126 5.448 9.539 hybrid contribution -1.174 0.818 0.093 1.434 sum 6.005 -2.309 5.541 8.491 Atomic orbital electron populations 1.22543 0.83219 1.01411 0.98659 1.87923 1.17739 1.28389 1.95049 1.23287 0.97607 0.84178 0.98000 1.21016 0.89717 0.97286 0.89891 1.43597 1.74922 1.03305 1.06524 1.19003 1.33120 1.01861 0.85296 0.92452 1.25293 0.95851 0.98506 0.98533 1.70026 1.28520 1.29010 1.23835 0.86501 0.78535 0.79476 0.83515 1.21216 1.21659 1.20197 1.19717 0.84471 0.85381 1.03048 1.20209 1.02382 1.00255 0.90712 1.25384 0.96268 1.06413 1.05183 1.82807 1.09757 1.66402 0.96104 1.23189 0.97706 1.24191 0.95590 1.19460 0.79672 0.72323 0.87808 1.90913 1.68745 1.49217 1.32030 1.84627 1.22927 1.83642 1.41581 1.20832 0.92305 0.93375 0.98412 0.90812 0.95731 0.94642 0.96119 0.93050 0.93695 0.92717 0.93488 0.93392 0.88419 0.81537 0.73113 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 11.01 101.05 1.11 1.77 16 2 O -0.37 -7.80 10.15 -35.23 -0.36 -8.16 16 3 C 0.05 0.97 6.25 37.16 0.23 1.20 16 4 C 0.15 3.05 6.06 -4.04 -0.02 3.03 16 5 N -0.56 -13.27 2.34 -174.60 -0.41 -13.68 16 6 C -0.26 -6.71 9.43 -15.06 -0.14 -6.85 16 7 H 0.06 1.49 7.89 -52.49 -0.41 1.08 16 8 C 0.02 0.52 4.99 -17.43 -0.09 0.43 16 9 N -0.87 -23.66 11.57 55.49 0.64 -23.02 16 10 Si 0.89 20.39 29.59 -169.99 -5.03 15.36 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.20 4.56 5.44 -5.19 -0.03 4.53 16 15 C -0.12 -2.39 5.36 -106.46 -0.57 -2.96 16 16 C -0.19 -3.56 10.67 29.19 0.31 -3.25 16 17 S 0.18 2.79 22.92 -107.50 -2.46 0.32 16 18 C -0.29 -4.87 6.45 -36.84 -0.24 -5.10 16 19 C 0.56 8.81 8.30 34.01 0.28 9.10 16 20 O -0.52 -9.29 17.63 -19.36 -0.34 -9.63 16 21 O -0.52 -6.11 13.29 -41.04 -0.55 -6.66 16 22 C -0.01 -0.24 9.80 -40.42 -0.40 -0.64 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 29 H 0.05 1.08 8.08 -51.92 -0.42 0.66 16 30 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.05 1.08 7.63 -51.93 -0.40 0.69 16 32 H 0.10 2.47 5.67 -51.93 -0.29 2.17 16 33 H 0.17 3.14 8.06 -52.49 -0.42 2.71 16 34 H 0.41 2.72 9.11 45.56 0.42 3.14 16 35 H 0.15 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -29.96 324.13 -6.79 -36.75 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.62 Total: 2.59 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 0.45 Total: 1.24 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.23 Total: -36.70 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -1.24 Total: -24.45 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.46 Total: 0.32 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.96 -6.79 -36.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599233765.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.278 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds