Wall clock time and date at job start Tue Mar 31 2020 05:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00041 * 2 1 4 4 C 1.53001 * 109.47152 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47013 * 65.00637 * 4 3 2 6 6 C 1.36934 * 120.00022 * 84.55888 * 5 4 3 7 7 H 1.07995 * 119.99942 * 41.55161 * 6 5 4 8 8 C 1.38813 * 119.99544 * 221.27791 * 6 5 4 9 9 N 1.31614 * 120.00411 * 18.69287 * 8 6 5 10 10 Si 1.86801 * 119.99788 * 198.70170 * 8 6 5 11 11 H 1.48503 * 109.47563 * 89.99653 * 10 8 6 12 12 H 1.48504 * 109.47085 * 209.99810 * 10 8 6 13 13 H 1.48502 * 109.47240 * 329.99737 * 10 8 6 14 14 C 1.46502 * 119.99814 * 264.55855 * 5 4 3 15 15 C 1.50709 * 109.47062 * 269.99972 * 14 5 4 16 16 C 1.33853 * 122.44441 * 269.70701 * 15 14 5 17 17 S 1.70611 * 110.96140 * 179.88943 * 16 15 14 18 18 C 1.75834 * 91.56604 * 0.31449 * 17 16 15 19 19 C 1.46391 * 125.46270 * 179.78742 * 18 17 16 20 20 O 1.21625 * 119.99861 * 180.02562 * 19 18 17 21 21 O 1.34898 * 120.00116 * 0.03976 * 19 18 17 22 22 C 1.36753 * 109.07172 * 359.82516 * 18 17 16 23 23 H 1.08997 * 109.47213 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47087 * 299.99799 * 1 2 3 25 25 H 1.09000 * 109.47065 * 59.99757 * 1 2 3 26 26 H 1.09001 * 109.47034 * 60.00386 * 3 2 1 27 27 H 1.08995 * 109.47591 * 300.00227 * 3 2 1 28 28 H 1.09001 * 109.47485 * 304.99957 * 4 3 2 29 29 H 1.09007 * 109.46965 * 185.00448 * 4 3 2 30 30 H 0.97000 * 120.00154 * 179.97438 * 9 8 6 31 31 H 1.09007 * 109.46967 * 29.99730 * 14 5 4 32 32 H 1.08997 * 109.47520 * 150.00101 * 14 5 4 33 33 H 1.07998 * 124.51721 * 359.97438 * 16 15 14 34 34 H 0.96695 * 116.99766 * 180.02562 * 21 19 18 35 35 H 1.08001 * 123.35547 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1587 1.3341 -2.3706 7 1 4.6336 2.3005 -2.2889 8 6 3.7389 0.8693 -3.6094 9 7 2.8579 -0.1057 -3.6826 10 14 4.4245 1.6278 -5.1728 11 1 5.6450 0.8901 -5.5870 12 1 3.4065 1.5452 -6.2508 13 1 4.7671 3.0511 -4.9235 14 6 4.2200 -0.8789 -1.3091 15 6 5.6587 -1.1588 -0.9585 16 6 6.6265 -1.2075 -1.8820 17 16 8.1383 -1.5406 -1.1648 18 6 7.4151 -1.6225 0.4359 19 6 8.1355 -1.8977 1.6802 20 8 7.5336 -1.9316 2.7366 21 8 9.4669 -2.1134 1.6553 22 6 6.0718 -1.3886 0.3318 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8515 0.5682 0.8409 29 1 3.9785 2.1766 0.0890 30 1 2.5643 -0.4302 -4.5483 31 1 3.5675 -1.3858 -0.5981 32 1 4.0137 -1.2434 -2.3154 33 1 6.4712 -1.0548 -2.9398 34 1 9.8986 -2.2915 2.5020 35 1 5.4023 -1.3845 1.1793 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599233765.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:58 Heat of formation + Delta-G solvation = -101.068972 kcal Electronic energy + Delta-G solvation = -20475.182318 eV Core-core repulsion = 17179.188970 eV Total energy + Delta-G solvation = -3295.993348 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.11230 -39.46550 -38.52924 -37.07190 -36.52089 -33.44942 -31.69052 -29.98131 -28.02577 -27.07165 -26.20789 -24.96661 -22.71485 -21.66983 -20.14766 -19.53986 -18.54925 -18.25536 -17.19504 -16.94509 -16.73939 -16.63103 -16.45832 -15.74079 -15.42480 -15.25944 -15.10276 -14.24114 -13.85720 -13.78194 -13.65238 -13.29721 -12.95957 -12.78812 -12.66607 -12.60745 -12.46652 -12.31697 -12.00871 -11.97527 -11.73822 -11.66424 -11.58469 -10.51228 -10.35498 -9.81630 -9.25436 -8.46623 -7.77186 -5.43822 -0.55290 0.60508 1.00804 1.30791 1.45807 1.49643 1.56479 1.98731 2.06465 2.52847 3.17758 3.30394 3.85141 4.19993 4.30481 4.37161 4.45273 4.53353 4.55861 4.64484 4.69421 4.75953 4.85407 4.89500 5.04236 5.09742 5.24904 5.38653 5.51236 5.60353 5.75646 5.83397 6.50643 6.56183 6.94191 7.21667 7.86770 8.46642 9.18344 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.014386 B = 0.006276 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.838199 B = 4460.156892 C = 5969.945741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.402 6.402 3 C 0.056 3.944 4 C 0.143 3.857 5 N -0.578 5.578 6 C -0.266 4.266 7 H 0.051 0.949 8 C -0.020 4.020 9 N -0.904 5.904 10 Si 0.945 3.055 11 H -0.280 1.280 12 H -0.297 1.297 13 H -0.273 1.273 14 C 0.214 3.786 15 C -0.134 4.134 16 C -0.214 4.214 17 S 0.273 5.727 18 C -0.296 4.296 19 C 0.571 3.429 20 O -0.543 6.543 21 O -0.502 6.502 22 C -0.029 4.029 23 H 0.088 0.912 24 H 0.053 0.947 25 H 0.024 0.976 26 H 0.054 0.946 27 H 0.021 0.979 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.250 0.750 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.158 0.842 34 H 0.437 0.563 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.040 -2.800 7.173 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.321 6.321 3 C -0.023 4.023 4 C 0.017 3.983 5 N -0.297 5.297 6 C -0.396 4.396 7 H 0.069 0.931 8 C -0.219 4.219 9 N -0.546 5.546 10 Si 0.773 3.227 11 H -0.206 1.206 12 H -0.224 1.224 13 H -0.198 1.198 14 C 0.086 3.914 15 C -0.148 4.148 16 C -0.353 4.353 17 S 0.543 5.457 18 C -0.414 4.414 19 C 0.416 3.584 20 O -0.436 6.436 21 O -0.317 6.317 22 C -0.064 4.064 23 H 0.106 0.894 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.175 0.825 34 H 0.299 0.701 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.233 -3.128 6.355 11.637 hybrid contribution -1.677 0.756 -0.101 1.843 sum 7.555 -2.371 6.254 10.091 Atomic orbital electron populations 1.22713 0.81217 1.02706 0.99464 1.87878 1.20058 1.28900 1.95222 1.23142 0.97064 0.84014 0.98052 1.21129 0.90389 0.97637 0.89116 1.43734 1.75723 1.03424 1.06866 1.19113 1.32441 1.01815 0.86256 0.93120 1.25829 0.96204 0.99114 1.00755 1.70158 1.30055 1.30567 1.23840 0.85643 0.77758 0.78916 0.80359 1.20623 1.22384 1.19762 1.19355 0.86400 0.84861 1.00831 1.19854 1.00933 1.02091 0.91886 1.25435 0.98457 1.06537 1.04918 1.82429 1.05998 1.63694 0.93604 1.23475 0.97675 1.22876 0.97344 1.19207 0.80640 0.71782 0.86764 1.90913 1.69656 1.50309 1.32763 1.84554 1.20745 1.82737 1.43644 1.20645 0.93210 0.95001 0.97591 0.89393 0.92841 0.95767 0.92777 0.96037 0.92715 0.91947 0.94057 0.94546 0.91508 0.82453 0.70101 0.83885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.17 11.01 113.37 1.25 2.42 16 2 O -0.40 -16.92 10.15 -148.98 -1.51 -18.43 16 3 C 0.06 2.25 6.25 71.98 0.45 2.70 16 4 C 0.14 5.96 6.06 86.38 0.52 6.48 16 5 N -0.58 -27.74 2.34 -706.31 -1.65 -29.39 16 6 C -0.27 -13.83 9.43 84.03 0.79 -13.03 16 7 H 0.05 2.67 7.89 -2.91 -0.02 2.65 16 8 C -0.02 -1.05 4.99 84.86 0.42 -0.63 16 9 N -0.90 -50.63 11.57 21.65 0.25 -50.38 16 10 Si 0.94 42.47 29.59 68.60 2.03 44.50 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 14 C 0.21 9.95 5.44 85.64 0.47 10.42 16 15 C -0.13 -5.29 5.36 -21.05 -0.11 -5.40 16 16 C -0.21 -7.74 10.67 66.82 0.71 -7.03 16 17 S 0.27 7.67 22.92 -56.49 -1.29 6.37 16 18 C -0.30 -9.33 6.45 24.05 0.16 -9.17 16 19 C 0.57 16.35 8.30 69.94 0.58 16.93 16 20 O -0.54 -18.44 17.63 19.43 0.34 -18.10 16 21 O -0.50 -9.92 13.29 -58.13 -0.77 -10.70 16 22 C -0.03 -1.03 9.80 21.73 0.21 -0.82 16 23 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 25 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 2.14 8.03 -2.39 -0.02 2.12 16 29 H 0.06 2.45 8.08 -2.38 -0.02 2.43 16 30 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 31 H 0.04 1.72 7.63 -2.38 -0.02 1.70 16 32 H 0.07 3.54 5.67 -2.39 -0.01 3.52 16 33 H 0.16 5.95 8.06 -2.91 -0.02 5.93 16 34 H 0.44 3.96 9.11 -74.06 -0.67 3.29 16 35 H 0.14 5.12 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -65.03 324.13 3.28 -61.74 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.44 Total: 11.52 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.45 Total: 2.86 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -1.40 Total: -79.77 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -1.94 Total: -47.22 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 7.67 SS G_CDS: -1.29 Total: 6.37 kcal Total: -65.03 3.28 -61.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599233765.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.324 kcal (2) G-P(sol) polarization free energy of solvation -65.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds