Wall clock time and date at job start Tue Mar 31 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 119.99782 * 2 1 4 4 H 1.48501 * 109.47127 * 239.99873 * 3 2 1 5 5 H 1.48496 * 109.47045 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47019 * 120.00412 * 3 2 1 7 7 C 1.37877 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47202 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47333 * 180.02562 * 10 9 7 12 12 C 1.34779 * 120.00392 * 180.02562 * 11 10 9 13 13 O 1.21595 * 119.99664 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00474 * 179.97438 * 12 11 10 15 15 N 1.40098 * 119.99547 * 0.02562 * 14 12 11 16 16 C 1.39842 * 119.99625 * 180.02562 * 15 14 12 17 17 C 1.38801 * 120.06972 * 0.02562 * 16 15 14 18 18 C 1.38352 * 119.93265 * 179.97438 * 17 16 15 19 19 F 1.35095 * 119.97546 * 180.02562 * 18 17 16 20 20 C 1.38490 * 120.05714 * 0.02562 * 18 17 16 21 21 C 1.38282 * 120.13467 * 359.95696 * 20 18 17 22 22 C 1.38272 * 120.07326 * 0.04513 * 21 20 18 23 23 F 1.35098 * 120.03346 * 180.25775 * 22 21 20 24 24 H 0.97007 * 120.00410 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46881 * 60.00113 * 9 7 2 26 26 H 1.08999 * 109.46883 * 300.00247 * 9 7 2 27 27 H 1.08998 * 109.47284 * 59.99352 * 10 9 7 28 28 H 1.09005 * 109.46853 * 300.00387 * 10 9 7 29 29 H 0.97002 * 119.99826 * 359.97438 * 11 10 9 30 30 H 0.96993 * 120.00137 * 179.97438 * 14 12 11 31 31 H 0.96998 * 120.00832 * 359.97438 * 15 14 12 32 32 H 1.08006 * 120.03683 * 359.95796 * 17 16 15 33 33 H 1.07998 * 119.93079 * 179.97438 * 20 18 17 34 34 H 1.07991 * 119.96527 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5129 -4.9307 -0.0012 12 6 2.1867 -6.0980 -0.0007 13 8 3.4027 -6.0979 -0.0003 14 7 1.5129 -7.2652 -0.0008 15 7 0.1120 -7.2651 -0.0018 16 6 -0.5872 -8.4762 -0.0013 17 6 0.1054 -9.6791 0.0007 18 6 -0.5892 -10.8756 0.0017 19 9 0.0840 -12.0469 0.0042 20 6 -1.9741 -10.8738 0.0002 21 6 -2.6667 -9.6769 -0.0015 22 6 -1.9781 -8.4779 -0.0025 23 9 -2.6555 -7.3090 0.0011 24 1 -0.4851 0.8401 0.0004 25 1 0.6241 -2.5566 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 2.8720 -3.6042 0.8894 28 1 2.8720 -3.6042 -0.8905 29 1 0.5429 -4.9307 -0.0011 30 1 1.9979 -8.1051 -0.0009 31 1 -0.3731 -6.4252 -0.0021 32 1 1.1854 -9.6811 0.0012 33 1 -2.5142 -11.8090 0.0006 34 1 -3.7466 -9.6786 -0.0023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921908006.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:27 Heat of formation + Delta-G solvation = -56.531613 kcal Electronic energy + Delta-G solvation = -21232.479022 eV Core-core repulsion = 17416.869323 eV Total energy + Delta-G solvation = -3815.609698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.26344 -49.10707 -40.28755 -39.13801 -36.42303 -35.07472 -32.94202 -32.16006 -30.67728 -29.53632 -28.32916 -24.95699 -23.54310 -22.86801 -21.51171 -20.70355 -19.14098 -18.89745 -17.72226 -17.12082 -16.82067 -16.39350 -16.24803 -15.67023 -15.65258 -15.48586 -14.86337 -14.67185 -14.57381 -14.15369 -13.75896 -13.72882 -13.34696 -13.00057 -12.86884 -12.33239 -11.68487 -11.67085 -11.28169 -11.07068 -10.70938 -10.43294 -10.37081 -9.79217 -9.67085 -9.35968 -9.11196 -8.71602 -8.44537 -7.62492 -6.13608 -4.17010 0.61330 0.82052 1.65071 3.02112 3.15420 3.25200 3.28853 3.32976 3.36716 3.77289 3.83232 4.22406 4.37493 4.52932 4.61082 4.84547 5.12333 5.23571 5.38419 5.61345 5.69994 5.71965 5.96610 6.20051 6.26235 6.39724 6.61873 6.70999 6.97584 7.15024 7.46908 7.53640 7.83922 8.10283 8.24418 8.57494 8.88432 9.48150 10.97918 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.028449 B = 0.003035 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.979456 B = 9223.131138 C =10186.664108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.136 3.864 11 N -0.733 5.733 12 C 0.708 3.292 13 O -0.576 6.576 14 N -0.540 5.540 15 N -0.534 5.534 16 C 0.225 3.775 17 C -0.216 4.216 18 C 0.147 3.853 19 F -0.133 7.133 20 C -0.188 4.188 21 C -0.068 4.068 22 C 0.017 3.983 23 F -0.134 7.134 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.389 0.611 30 H 0.429 0.571 31 H 0.433 0.567 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.716 -21.865 -0.005 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.014 3.986 11 N -0.388 5.388 12 C 0.407 3.593 13 O -0.450 6.450 14 N -0.296 5.296 15 N -0.262 5.262 16 C 0.118 3.882 17 C -0.240 4.240 18 C 0.127 3.873 19 F -0.112 7.112 20 C -0.209 4.209 21 C -0.088 4.088 22 C -0.008 4.008 23 F -0.112 7.112 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.223 0.777 30 H 0.274 0.726 31 H 0.277 0.723 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.735 -21.447 -0.004 22.200 hybrid contribution -0.096 0.898 0.002 0.903 sum -5.831 -20.549 -0.002 21.360 Atomic orbital electron populations 1.69937 1.06105 1.27096 1.50069 1.24992 0.94903 0.99445 0.94874 0.86552 0.79508 0.82551 0.78811 1.20073 1.21217 1.20080 1.20978 0.93244 0.90234 1.51776 0.92188 1.19335 0.94218 0.91026 0.97918 1.21736 0.95802 0.79916 1.01135 1.45629 1.09702 1.05606 1.77815 1.15846 0.85092 0.79825 0.78493 1.91013 1.10407 1.84378 1.59190 1.44684 0.93028 1.09174 1.82727 1.43287 0.94556 1.06370 1.82007 1.17332 0.89023 0.85681 0.96178 1.20183 1.00742 0.89411 1.13702 1.17263 0.89862 0.80623 0.99580 1.91526 1.80529 1.45592 1.93521 1.20757 0.91902 0.99262 1.08981 1.20761 1.00970 0.89510 0.97564 1.16953 0.86958 0.82691 1.14242 1.91520 1.79524 1.45456 1.94746 0.92712 0.95879 0.95893 0.92260 0.92266 0.77676 0.72556 0.72301 0.84159 0.83895 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 2.82 5.61 -4.05 -0.02 2.79 16 11 N -0.73 -12.42 5.52 -65.23 -0.36 -12.78 16 12 C 0.71 11.77 8.68 -86.92 -0.75 11.01 16 13 O -0.58 -11.65 17.18 5.28 0.09 -11.56 16 14 N -0.54 -6.70 6.22 27.64 0.17 -6.53 16 15 N -0.53 -5.84 6.45 32.46 0.21 -5.63 16 16 C 0.23 2.22 6.73 -83.68 -0.56 1.66 16 17 C -0.22 -1.94 9.46 -39.33 -0.37 -2.31 16 18 C 0.15 1.26 7.30 -39.45 -0.29 0.97 16 19 F -0.13 -1.23 17.26 2.25 0.04 -1.19 16 20 C -0.19 -1.32 10.02 -39.47 -0.40 -1.72 16 21 C -0.07 -0.49 10.02 -39.55 -0.40 -0.89 16 22 C 0.02 0.16 7.31 -39.25 -0.29 -0.13 16 23 F -0.13 -1.42 16.64 2.25 0.04 -1.38 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.39 5.76 6.39 -40.82 -0.26 5.49 16 30 H 0.43 4.54 6.71 -182.61 -1.22 3.32 16 31 H 0.43 4.67 6.19 -182.60 -1.13 3.54 16 32 H 0.14 1.12 6.20 -52.48 -0.33 0.79 16 33 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 308.42 15.07 4.65 4.65 Total: -1.00 -31.19 308.42 -8.10 -39.28 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.02 Total: 5.53 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -3.63 Total: -1.48 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.76 Total: -49.97 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.08 Total: -2.58 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.19 -8.10 -39.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921908006.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.247 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds