Wall clock time and date at job start Tue Mar 31 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47136 * 205.41866 * 3 2 1 5 5 C 1.37098 * 120.00016 * 268.71288 * 4 3 2 6 6 H 1.08005 * 120.00324 * 201.75768 * 5 4 3 7 7 C 1.38947 * 120.00158 * 21.75968 * 5 4 3 8 8 N 1.31410 * 119.99806 * 23.88068 * 7 5 4 9 9 Si 1.86802 * 120.00199 * 203.88407 * 7 5 4 10 10 H 1.48503 * 109.46869 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.46950 * 119.99437 * 9 7 5 12 12 H 1.48491 * 109.47332 * 239.99680 * 9 7 5 13 13 C 1.34778 * 120.00282 * 88.71149 * 4 3 2 14 14 O 1.21296 * 120.00317 * 185.04504 * 13 4 3 15 15 C 1.50696 * 120.00050 * 5.04706 * 13 4 3 16 16 H 1.09002 * 110.26679 * 326.14891 * 15 13 4 17 17 C 1.54347 * 110.30686 * 88.32234 * 15 13 4 18 18 C 1.54341 * 102.39190 * 92.57414 * 17 15 13 19 19 H 1.08994 * 110.30611 * 267.42913 * 18 17 15 20 20 O 1.42896 * 110.30190 * 145.27328 * 18 17 15 21 21 C 1.51370 * 105.16718 * 26.35161 * 18 17 15 22 22 C 1.38504 * 130.39161 * 162.81200 * 21 18 17 23 23 C 1.38105 * 120.21477 * 179.97438 * 22 21 18 24 24 C 1.38249 * 119.93428 * 0.02562 * 23 22 21 25 25 C 1.38101 * 119.93802 * 0.24680 * 24 23 22 26 26 C 1.38215 * 109.76226 * 342.81023 * 21 18 17 27 27 H 4.40633 * 5.51378 * 180.02562 * 4 1 2 28 28 H 1.09006 * 109.47145 * 85.41749 * 3 2 1 29 29 H 1.09002 * 109.46981 * 325.41813 * 3 2 1 30 30 H 0.97001 * 120.00163 * 180.02562 * 8 7 5 31 31 H 1.08999 * 110.82856 * 210.80797 * 17 15 13 32 32 H 1.09007 * 110.81887 * 334.35314 * 17 15 13 33 33 H 0.96707 * 113.99908 * 182.80786 * 20 18 17 34 34 H 1.08000 * 119.89421 * 0.02562 * 22 21 18 35 35 H 1.07997 * 120.03107 * 179.97438 * 23 22 21 36 36 H 1.07999 * 120.03170 * 179.97438 * 24 23 22 37 37 H 1.07997 * 119.89563 * 179.74507 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2483 0.5928 5 6 3.3869 2.3336 -0.2057 6 1 4.0548 3.1109 0.1352 7 6 2.7841 2.4337 -1.4536 8 7 1.6607 1.7957 -1.6937 9 14 3.5708 3.4751 -2.7901 10 1 4.8208 4.0857 -2.2703 11 1 3.8874 2.6197 -3.9621 12 1 2.6296 4.5479 -3.2000 13 6 3.3336 1.3293 1.9232 14 8 3.6492 2.3872 2.4259 15 6 3.1651 0.1056 2.7864 16 1 2.3727 -0.5296 2.3904 17 6 4.4919 -0.6785 2.8690 18 6 5.1446 -0.0924 4.1389 19 1 5.7989 0.7395 3.8784 20 8 5.8788 -1.1042 4.8311 21 6 3.9904 0.3936 4.9891 22 6 3.9394 0.7112 6.3363 23 6 2.7565 1.1413 6.9046 24 6 1.6189 1.2550 6.1273 25 6 1.6663 0.9334 4.7851 26 6 2.8530 0.5073 4.2121 27 1 -1.0502 -0.0004 0.0000 28 1 3.0094 -0.0813 -1.0244 29 1 3.0097 -0.8453 0.5833 30 1 1.2400 1.8653 -2.5650 31 1 4.3047 -1.7458 2.9868 32 1 5.1103 -0.4871 1.9919 33 1 6.2756 -0.8043 5.6605 34 1 4.8278 0.6231 6.9441 35 1 2.7200 1.3878 7.9555 36 1 0.6929 1.5908 6.5703 37 1 0.7762 1.0185 4.1795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491663703.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:01 Heat of formation + Delta-G solvation = 16.988439 kcal Electronic energy + Delta-G solvation = -22454.301924 eV Core-core repulsion = 19163.817073 eV Total energy + Delta-G solvation = -3290.484851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.115 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.42657 -38.26178 -36.64593 -35.22783 -34.08087 -32.00865 -31.24973 -30.74583 -28.82552 -27.05935 -26.25092 -24.53179 -22.54214 -21.43146 -20.71313 -18.83587 -17.88228 -17.38099 -16.74714 -16.31780 -16.02591 -15.11817 -14.95065 -14.70099 -14.19327 -14.02644 -13.71700 -13.27259 -13.02482 -12.67828 -12.49733 -12.30740 -12.22528 -11.71041 -11.59919 -11.53298 -11.28958 -11.04379 -10.88681 -10.55604 -10.49047 -10.31724 -9.88491 -9.32093 -9.20373 -8.93754 -8.66773 -8.51125 -8.13949 -7.86632 -6.30027 -3.89561 1.58836 1.64659 3.11528 3.24692 3.30908 3.61592 3.87482 3.98601 4.08638 4.19770 4.39914 4.58283 4.78868 4.91989 5.03844 5.16910 5.21852 5.30596 5.45860 5.50299 5.54902 5.73879 5.77315 5.85768 5.96040 6.12347 6.15968 6.26971 6.28132 6.37819 6.59158 6.65185 6.72679 6.90586 7.03245 7.22516 7.55041 7.68202 8.04271 8.39792 8.89965 9.11073 9.32267 9.88060 10.65338 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.005379 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.396394 B = 5204.205686 C = 5508.051917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.113 4.113 3 C 0.232 3.768 4 N -0.438 5.438 5 C -0.319 4.319 6 H 0.102 0.898 7 C 0.034 3.966 8 N -0.851 5.851 9 Si 0.916 3.084 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.463 3.537 14 O -0.571 6.571 15 C -0.072 4.072 16 H 0.097 0.903 17 C -0.097 4.097 18 C 0.148 3.852 19 H 0.077 0.923 20 O -0.561 6.561 21 C -0.123 4.123 22 C -0.104 4.104 23 C -0.127 4.127 24 C -0.118 4.118 25 C -0.097 4.097 26 C -0.045 4.045 27 H 0.197 0.803 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.267 0.733 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.374 0.626 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 -6.757 9.976 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.115 4.115 3 C 0.108 3.892 4 N -0.156 5.156 5 C -0.446 4.446 6 H 0.120 0.880 7 C -0.171 4.171 8 N -0.487 5.487 9 Si 0.743 3.257 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.251 3.749 14 O -0.454 6.454 15 C -0.094 4.094 16 H 0.115 0.885 17 C -0.135 4.135 18 C 0.090 3.910 19 H 0.095 0.905 20 O -0.366 6.366 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.145 4.145 24 C -0.136 4.136 25 C -0.116 4.116 26 C -0.045 4.045 27 H 0.214 0.786 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.221 0.779 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.994 -6.583 9.504 11.732 hybrid contribution -0.129 1.032 -0.447 1.132 sum 1.865 -5.551 9.057 10.785 Atomic orbital electron populations 1.24166 0.95258 1.03465 1.04436 1.22931 0.94197 0.97318 0.97095 1.18180 0.84758 0.86404 0.99844 1.43673 1.56603 1.10893 1.04422 1.19614 1.26250 1.02126 0.96586 0.88038 1.25325 0.94433 0.97988 0.99366 1.70133 1.13341 1.42422 1.22820 0.86035 0.79637 0.79484 0.80585 1.19203 1.20584 1.20914 1.19683 0.84363 0.88754 0.82137 1.90545 1.52287 1.30237 1.72349 1.20830 0.98581 0.97287 0.92686 0.88492 1.22264 0.94651 1.00127 0.96491 1.21321 0.89664 0.89656 0.90382 0.90514 1.86515 1.71368 1.39175 1.39569 1.21149 0.96641 1.00312 0.94220 1.20414 0.97970 1.00364 0.93502 1.20912 0.92958 1.01122 0.99506 1.20971 0.98406 1.00449 0.93751 1.20649 0.97400 0.98615 0.94887 1.19990 0.93342 0.97201 0.93999 0.78600 0.88572 0.91481 0.92214 0.89370 0.89384 0.77915 0.86728 0.86208 0.86093 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.30 19.04 29.55 0.56 -4.74 16 2 C -0.11 -2.52 10.63 -37.12 -0.39 -2.92 16 3 C 0.23 4.97 4.82 -6.83 -0.03 4.93 16 4 N -0.44 -10.79 2.58 -117.94 -0.30 -11.09 16 5 C -0.32 -8.63 9.19 -14.93 -0.14 -8.77 16 6 H 0.10 2.91 7.52 -52.48 -0.39 2.52 16 7 C 0.03 0.88 4.79 -17.47 -0.08 0.80 16 8 N -0.85 -22.19 9.40 55.50 0.52 -21.66 16 9 Si 0.92 20.23 29.61 -169.99 -5.03 15.19 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.46 11.05 6.63 -10.99 -0.07 10.97 16 14 O -0.57 -15.75 16.02 5.54 0.09 -15.66 16 15 C -0.07 -1.37 2.32 -91.89 -0.21 -1.58 16 16 H 0.10 1.75 6.40 -51.93 -0.33 1.42 16 17 C -0.10 -1.58 5.98 -25.32 -0.15 -1.73 16 18 C 0.15 2.34 4.22 -26.85 -0.11 2.23 16 19 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 20 O -0.56 -7.61 13.36 -35.23 -0.47 -8.08 16 21 C -0.12 -2.05 5.82 -104.20 -0.61 -2.65 16 22 C -0.10 -1.48 9.93 -39.53 -0.39 -1.87 16 23 C -0.13 -1.71 10.05 -39.63 -0.40 -2.11 16 24 C -0.12 -1.72 10.05 -39.63 -0.40 -2.12 16 25 C -0.10 -1.69 10.04 -39.54 -0.40 -2.09 16 26 C -0.04 -0.83 4.86 -104.21 -0.51 -1.33 16 27 H 0.20 3.38 7.80 -54.08 -0.42 2.96 16 28 H 0.10 2.13 7.12 -51.93 -0.37 1.76 16 29 H 0.07 1.18 6.18 -51.93 -0.32 0.86 16 30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 32 H 0.09 1.42 7.89 -51.92 -0.41 1.01 16 33 H 0.37 3.47 9.01 45.56 0.41 3.88 16 34 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 319.38 15.07 4.81 4.81 Total: -1.00 -32.64 319.38 -7.23 -39.87 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -3.51 Total: 9.61 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -3.33 Total: -12.98 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.22 Total: -32.75 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.38 Total: -23.75 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.64 -7.23 -39.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491663703.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.858 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds