Wall clock time and date at job start Tue Mar 31 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47095 * 272.47635 * 3 2 1 5 5 C 1.37091 * 120.00240 * 83.21695 * 4 3 2 6 6 H 1.07999 * 120.00382 * 166.52622 * 5 4 3 7 7 C 1.38954 * 119.99755 * 346.52554 * 5 4 3 8 8 N 1.31410 * 120.00013 * 359.81537 * 7 5 4 9 9 Si 1.86795 * 119.99959 * 179.80898 * 7 5 4 10 10 H 1.48505 * 109.47014 * 90.00608 * 9 7 5 11 11 H 1.48500 * 109.47435 * 210.00180 * 9 7 5 12 12 H 1.48506 * 109.47239 * 330.00301 * 9 7 5 13 13 C 1.34783 * 119.99771 * 263.21355 * 4 3 2 14 14 O 1.21292 * 119.99595 * 185.17032 * 13 4 3 15 15 C 1.50695 * 120.00115 * 5.17457 * 13 4 3 16 16 H 1.08998 * 110.34836 * 24.63864 * 15 13 4 17 17 C 1.54349 * 110.30097 * 262.50911 * 15 13 4 18 18 C 1.54351 * 102.39020 * 267.42300 * 17 15 13 19 19 H 1.08997 * 110.30421 * 214.72855 * 18 17 15 20 20 O 1.42900 * 110.38453 * 92.61750 * 18 17 15 21 21 C 1.51368 * 105.16843 * 333.65326 * 18 17 15 22 22 C 1.38501 * 130.38863 * 197.47898 * 21 18 17 23 23 C 1.38105 * 120.21535 * 180.19603 * 22 21 18 24 24 C 1.38248 * 119.93430 * 359.49624 * 23 22 21 25 25 C 1.38105 * 119.93342 * 0.24614 * 24 23 22 26 26 C 1.38207 * 109.76322 * 17.18921 * 21 18 17 27 27 H 4.40640 * 5.51529 * 179.97438 * 4 1 2 28 28 H 1.09004 * 109.46861 * 152.47969 * 3 2 1 29 29 H 1.09000 * 109.47383 * 32.47834 * 3 2 1 30 30 H 0.97004 * 120.00047 * 179.97438 * 8 7 5 31 31 H 1.09001 * 110.82189 * 149.20041 * 17 15 13 32 32 H 1.08998 * 110.82438 * 25.64827 * 17 15 13 33 33 H 0.96704 * 113.99717 * 182.75156 * 20 18 17 34 34 H 1.08006 * 119.89319 * 359.94246 * 22 21 18 35 35 H 1.08007 * 120.03142 * 179.77378 * 23 22 21 36 36 H 1.07995 * 120.03405 * 180.27470 * 24 23 22 37 37 H 1.08003 * 119.88933 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.0588 1.3799 5 6 3.2311 -1.2665 2.0214 6 1 3.7863 -1.3448 2.9444 7 6 2.6149 -2.3900 1.4839 8 7 1.9364 -2.2940 0.3627 9 14 2.7513 -4.0367 2.3551 10 1 1.6264 -4.1844 3.3133 11 1 2.6960 -5.1324 1.3542 12 1 4.0399 -4.1026 3.0903 13 6 3.4885 1.0739 2.0188 14 8 3.9804 1.0171 3.1260 15 6 3.2732 2.4108 1.3575 16 1 2.4722 2.3448 0.6212 17 6 4.5776 2.8935 0.6883 18 6 5.2232 3.7483 1.7996 19 1 5.7538 4.5955 1.3650 20 8 6.1162 2.9541 2.5830 21 6 4.0676 4.2320 2.6491 22 6 4.0003 5.2665 3.5675 23 6 2.8207 5.5255 4.2375 24 6 1.7000 4.7567 3.9836 25 6 1.7638 3.7281 3.0643 26 6 2.9472 3.4636 2.3952 27 1 -1.0501 0.0002 0.0001 28 1 3.0089 0.9122 -0.4749 29 1 3.0097 -0.8661 -0.5518 30 1 1.5065 -3.0784 -0.0128 31 1 4.3605 3.5005 -0.1906 32 1 5.2157 2.0487 0.4292 33 1 6.5190 3.4291 3.3228 34 1 4.8742 5.8701 3.7634 35 1 2.7725 6.3306 4.9558 36 1 0.7756 4.9607 4.5033 37 1 0.8877 3.1283 2.8662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491663707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:05 Heat of formation + Delta-G solvation = 28.024070 kcal Electronic energy + Delta-G solvation = -22645.016765 eV Core-core repulsion = 19355.010455 eV Total energy + Delta-G solvation = -3290.006310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.38467 -38.17396 -36.51086 -35.13439 -33.82267 -31.80048 -31.19136 -30.81693 -28.80879 -27.09190 -26.18517 -24.37157 -22.50881 -21.38295 -20.65610 -18.77121 -17.83727 -17.38773 -16.46173 -16.25627 -15.94869 -15.17192 -14.90732 -14.47384 -13.96186 -13.91137 -13.61743 -13.28088 -12.85294 -12.80652 -12.52558 -12.29321 -12.04292 -11.65789 -11.38054 -11.22498 -11.17885 -11.02224 -10.74134 -10.47599 -10.43961 -10.21120 -9.66830 -9.44985 -9.17612 -8.67299 -8.63800 -8.55598 -8.07168 -7.82999 -6.18194 -3.80631 1.56645 1.63728 3.19165 3.27673 3.33002 3.75269 3.93568 3.98856 4.18670 4.28750 4.49027 4.65602 4.86320 5.08385 5.12116 5.16760 5.23179 5.30716 5.38677 5.59188 5.62720 5.69904 5.85767 5.97835 5.98206 6.12939 6.20247 6.28219 6.34897 6.43424 6.63763 6.72136 6.93919 7.04063 7.20254 7.22333 7.60407 7.97584 8.09327 8.51774 8.96648 9.21474 9.43282 9.98644 10.74716 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.020413 B = 0.005662 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.339979 B = 4944.473093 C = 5236.008453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.087 4.087 3 C 0.231 3.769 4 N -0.450 5.450 5 C -0.297 4.297 6 H 0.104 0.896 7 C 0.024 3.976 8 N -0.882 5.882 9 Si 0.930 3.070 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.469 3.531 14 O -0.558 6.558 15 C -0.072 4.072 16 H 0.093 0.907 17 C -0.103 4.103 18 C 0.152 3.848 19 H 0.059 0.941 20 O -0.534 6.534 21 C -0.130 4.130 22 C -0.103 4.103 23 C -0.130 4.130 24 C -0.115 4.115 25 C -0.103 4.103 26 C -0.039 4.039 27 H 0.195 0.805 28 H 0.053 0.947 29 H 0.124 0.876 30 H 0.267 0.733 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.370 0.630 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 13.228 -0.827 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.090 4.090 3 C 0.109 3.891 4 N -0.170 5.170 5 C -0.424 4.424 6 H 0.121 0.879 7 C -0.176 4.176 8 N -0.523 5.523 9 Si 0.758 3.242 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.256 3.744 14 O -0.439 6.439 15 C -0.094 4.094 16 H 0.111 0.889 17 C -0.141 4.141 18 C 0.093 3.907 19 H 0.077 0.923 20 O -0.338 6.338 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.148 4.148 24 C -0.133 4.133 25 C -0.121 4.121 26 C -0.039 4.039 27 H 0.212 0.788 28 H 0.071 0.929 29 H 0.142 0.858 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.216 0.784 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.642 12.541 -0.815 12.674 hybrid contribution -0.478 -0.562 0.767 1.065 sum 1.164 11.979 -0.047 12.035 Atomic orbital electron populations 1.24160 0.95305 1.08785 1.02557 1.23127 0.94257 0.93674 0.97914 1.18583 0.84337 1.01015 0.85214 1.43697 1.56483 1.05669 1.11113 1.19745 1.30859 0.83995 1.07849 0.87861 1.25276 0.95802 0.99941 0.96620 1.69891 1.33659 1.29739 1.18985 0.85851 0.78788 0.80898 0.78712 1.20587 1.20948 1.19527 1.19521 0.84355 0.83881 0.86621 1.90552 1.46761 1.86333 1.20304 1.20844 0.98577 0.93766 0.96205 0.88854 1.22287 0.95374 1.00399 0.96054 1.21045 0.87523 0.92128 0.90026 0.92338 1.86749 1.61148 1.40620 1.45329 1.21215 0.96841 0.96157 0.98783 1.20510 0.97873 0.97177 0.96528 1.20924 0.93185 1.00403 1.00323 1.20983 0.98484 0.95856 0.97959 1.20684 0.97490 0.97535 0.96383 1.20121 0.93382 0.94231 0.96180 0.78800 0.92886 0.85838 0.92200 0.89376 0.88997 0.78372 0.86681 0.86247 0.86120 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.20 19.25 29.55 0.57 -5.63 16 2 C -0.09 -2.01 10.75 -37.12 -0.40 -2.41 16 3 C 0.23 5.23 4.86 -6.83 -0.03 5.20 16 4 N -0.45 -11.52 2.60 -117.94 -0.31 -11.83 16 5 C -0.30 -8.31 9.47 -14.93 -0.14 -8.45 16 6 H 0.10 3.06 7.22 -52.49 -0.38 2.68 16 7 C 0.02 0.65 5.36 -17.47 -0.09 0.55 16 8 N -0.88 -23.05 8.00 55.50 0.44 -22.61 16 9 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.47 11.53 6.55 -10.98 -0.07 11.46 16 14 O -0.56 -15.69 15.57 5.33 0.08 -15.60 16 15 C -0.07 -1.39 2.34 -91.89 -0.21 -1.61 16 16 H 0.09 1.71 6.29 -51.93 -0.33 1.39 16 17 C -0.10 -1.66 6.15 -25.32 -0.16 -1.82 16 18 C 0.15 2.34 4.21 -26.85 -0.11 2.23 16 19 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 20 O -0.53 -9.29 12.86 -35.45 -0.46 -9.75 16 21 C -0.13 -2.11 5.80 -104.21 -0.60 -2.72 16 22 C -0.10 -1.42 10.04 -39.53 -0.40 -1.82 16 23 C -0.13 -1.73 10.05 -39.63 -0.40 -2.13 16 24 C -0.11 -1.66 10.05 -39.63 -0.40 -2.06 16 25 C -0.10 -1.78 10.04 -39.53 -0.40 -2.17 16 26 C -0.04 -0.71 4.97 -104.21 -0.52 -1.23 16 27 H 0.19 3.45 7.80 -54.09 -0.42 3.03 16 28 H 0.05 1.01 6.16 -51.93 -0.32 0.69 16 29 H 0.12 2.97 6.33 -51.93 -0.33 2.64 16 30 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.60 7.85 -51.93 -0.41 1.19 16 33 H 0.37 4.83 9.10 45.56 0.41 5.24 16 34 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.12 2.03 8.06 -52.48 -0.42 1.60 16 LS Contribution 317.36 15.07 4.78 4.78 Total: -1.00 -33.42 317.36 -7.28 -40.70 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -3.44 Total: 10.68 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -3.37 Total: -12.61 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.14 Total: -34.44 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.37 Total: -25.35 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.42 -7.28 -40.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491663707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.726 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds