Wall clock time and date at job start Tue Mar 31 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47095 * 272.47635 * 3 2 1 5 5 C 1.37091 * 120.00240 * 83.21695 * 4 3 2 6 6 H 1.07999 * 120.00382 * 166.52622 * 5 4 3 7 7 C 1.38954 * 119.99755 * 346.52554 * 5 4 3 8 8 N 1.31410 * 120.00013 * 359.81537 * 7 5 4 9 9 Si 1.86795 * 119.99959 * 179.80898 * 7 5 4 10 10 H 1.48505 * 109.47014 * 90.00608 * 9 7 5 11 11 H 1.48500 * 109.47435 * 210.00180 * 9 7 5 12 12 H 1.48506 * 109.47239 * 330.00301 * 9 7 5 13 13 C 1.34783 * 119.99771 * 263.21355 * 4 3 2 14 14 O 1.21292 * 119.99595 * 185.17032 * 13 4 3 15 15 C 1.50695 * 120.00115 * 5.17457 * 13 4 3 16 16 H 1.08998 * 110.34836 * 24.63864 * 15 13 4 17 17 C 1.54349 * 110.30097 * 262.50911 * 15 13 4 18 18 C 1.54351 * 102.39020 * 267.42300 * 17 15 13 19 19 H 1.08997 * 110.30421 * 214.72855 * 18 17 15 20 20 O 1.42900 * 110.38453 * 92.61750 * 18 17 15 21 21 C 1.51368 * 105.16843 * 333.65326 * 18 17 15 22 22 C 1.38501 * 130.38863 * 197.47898 * 21 18 17 23 23 C 1.38105 * 120.21535 * 180.19603 * 22 21 18 24 24 C 1.38248 * 119.93430 * 359.49624 * 23 22 21 25 25 C 1.38105 * 119.93342 * 0.24614 * 24 23 22 26 26 C 1.38207 * 109.76322 * 17.18921 * 21 18 17 27 27 H 4.40640 * 5.51529 * 179.97438 * 4 1 2 28 28 H 1.09004 * 109.46861 * 152.47969 * 3 2 1 29 29 H 1.09000 * 109.47383 * 32.47834 * 3 2 1 30 30 H 0.97004 * 120.00047 * 179.97438 * 8 7 5 31 31 H 1.09001 * 110.82189 * 149.20041 * 17 15 13 32 32 H 1.08998 * 110.82438 * 25.64827 * 17 15 13 33 33 H 0.96704 * 113.99717 * 182.75156 * 20 18 17 34 34 H 1.08006 * 119.89319 * 359.94246 * 22 21 18 35 35 H 1.08007 * 120.03142 * 179.77378 * 23 22 21 36 36 H 1.07995 * 120.03405 * 180.27470 * 24 23 22 37 37 H 1.08003 * 119.88933 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.0588 1.3799 5 6 3.2311 -1.2665 2.0214 6 1 3.7863 -1.3448 2.9444 7 6 2.6149 -2.3900 1.4839 8 7 1.9364 -2.2940 0.3627 9 14 2.7513 -4.0367 2.3551 10 1 1.6264 -4.1844 3.3133 11 1 2.6960 -5.1324 1.3542 12 1 4.0399 -4.1026 3.0903 13 6 3.4885 1.0739 2.0188 14 8 3.9804 1.0171 3.1260 15 6 3.2732 2.4108 1.3575 16 1 2.4722 2.3448 0.6212 17 6 4.5776 2.8935 0.6883 18 6 5.2232 3.7483 1.7996 19 1 5.7538 4.5955 1.3650 20 8 6.1162 2.9541 2.5830 21 6 4.0676 4.2320 2.6491 22 6 4.0003 5.2665 3.5675 23 6 2.8207 5.5255 4.2375 24 6 1.7000 4.7567 3.9836 25 6 1.7638 3.7281 3.0643 26 6 2.9472 3.4636 2.3952 27 1 -1.0501 0.0002 0.0001 28 1 3.0089 0.9122 -0.4749 29 1 3.0097 -0.8661 -0.5518 30 1 1.5065 -3.0784 -0.0128 31 1 4.3605 3.5005 -0.1906 32 1 5.2157 2.0487 0.4292 33 1 6.5190 3.4291 3.3228 34 1 4.8742 5.8701 3.7634 35 1 2.7725 6.3306 4.9558 36 1 0.7756 4.9607 4.5033 37 1 0.8877 3.1283 2.8662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491663707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:04 Heat of formation + Delta-G solvation = 6.064892 kcal Electronic energy + Delta-G solvation = -22645.968986 eV Core-core repulsion = 19355.010455 eV Total energy + Delta-G solvation = -3290.958532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.74955 -39.85952 -37.73039 -37.04386 -35.22228 -33.72176 -33.05016 -31.99693 -30.03862 -28.66422 -27.86415 -26.22855 -23.68700 -22.85934 -21.82427 -20.39351 -19.71196 -18.78365 -18.24786 -17.89864 -17.28074 -16.55619 -16.25735 -16.09351 -15.77179 -15.58009 -14.89811 -14.54581 -14.42835 -14.24924 -14.10195 -14.01964 -13.31466 -13.19966 -13.00996 -12.87784 -12.65795 -12.53556 -12.43583 -12.16360 -11.89623 -11.67312 -11.38933 -10.98652 -10.84593 -10.50149 -10.30358 -9.82479 -9.74573 -9.50751 -8.19638 -5.90759 0.40996 0.46386 1.34477 1.38034 1.49932 1.95571 2.13747 2.33470 2.48437 2.77813 3.09668 3.26750 3.30082 3.49619 3.77255 3.92698 4.02571 4.06252 4.14734 4.19024 4.28882 4.43942 4.55149 4.67509 4.74636 4.79270 4.91825 4.99688 5.05878 5.19231 5.20697 5.44868 5.48874 5.52107 5.58605 5.73631 6.05737 6.12209 6.50565 6.94596 7.18345 7.21338 7.47273 8.04537 8.69113 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.020413 B = 0.005662 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.339979 B = 4944.473093 C = 5236.008453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.127 4.127 3 C 0.236 3.764 4 N -0.463 5.463 5 C -0.336 4.336 6 H 0.072 0.928 7 C -0.003 4.003 8 N -0.883 5.883 9 Si 0.987 3.013 10 H -0.280 1.280 11 H -0.267 1.267 12 H -0.275 1.275 13 C 0.462 3.538 14 O -0.605 6.605 15 C -0.066 4.066 16 H 0.095 0.905 17 C -0.104 4.104 18 C 0.150 3.850 19 H 0.101 0.899 20 O -0.566 6.566 21 C -0.138 4.138 22 C -0.101 4.101 23 C -0.124 4.124 24 C -0.118 4.118 25 C -0.131 4.131 26 C -0.076 4.076 27 H 0.228 0.772 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.269 0.731 31 H 0.129 0.871 32 H 0.071 0.929 33 H 0.385 0.615 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.146 0.854 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.303 15.229 -0.905 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.129 4.129 3 C 0.113 3.887 4 N -0.183 5.183 5 C -0.464 4.464 6 H 0.090 0.910 7 C -0.204 4.204 8 N -0.522 5.522 9 Si 0.812 3.188 10 H -0.206 1.206 11 H -0.191 1.191 12 H -0.200 1.200 13 C 0.251 3.749 14 O -0.489 6.489 15 C -0.087 4.087 16 H 0.113 0.887 17 C -0.141 4.141 18 C 0.091 3.909 19 H 0.118 0.882 20 O -0.373 6.373 21 C -0.139 4.139 22 C -0.119 4.119 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.149 4.149 26 C -0.077 4.077 27 H 0.245 0.755 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.090 0.910 33 H 0.234 0.766 34 H 0.170 0.830 35 H 0.176 0.824 36 H 0.164 0.836 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.316 14.557 -0.931 14.646 hybrid contribution -0.434 -1.137 0.835 1.475 sum 0.882 13.420 -0.097 13.449 Atomic orbital electron populations 1.25012 0.96281 1.07120 1.00886 1.23427 0.94937 0.95152 0.99434 1.18542 0.84640 1.01768 0.83705 1.43897 1.56717 1.05463 1.12197 1.19600 1.32722 0.86121 1.07972 0.91034 1.25924 0.95048 1.02237 0.97187 1.70043 1.32819 1.30411 1.18955 0.85018 0.78237 0.77596 0.77958 1.20646 1.19125 1.20036 1.20478 0.82657 0.85471 0.86260 1.90493 1.48627 1.87381 1.22433 1.20766 1.00389 0.90999 0.96578 0.88706 1.22434 0.93330 1.00547 0.97814 1.21227 0.87449 0.92725 0.89471 0.88186 1.86712 1.61700 1.42450 1.46418 1.21454 0.96153 0.96672 0.99585 1.20975 0.99436 0.96407 0.95049 1.21430 0.92241 1.00465 1.00006 1.21333 1.00306 0.94898 0.97014 1.20839 0.97061 0.99026 0.98010 1.20240 0.94917 0.95089 0.97444 0.75491 0.89626 0.87718 0.91971 0.85264 0.90989 0.76609 0.83046 0.82388 0.83613 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.53 19.25 74.32 1.43 -10.10 16 2 C -0.13 -5.90 10.75 31.12 0.33 -5.57 16 3 C 0.24 10.94 4.86 84.57 0.41 11.35 16 4 N -0.46 -24.80 2.60 -645.42 -1.68 -26.48 16 5 C -0.34 -19.76 9.47 84.04 0.80 -18.97 16 6 H 0.07 4.55 7.22 -2.91 -0.02 4.53 16 7 C 0.00 -0.18 5.36 84.93 0.45 0.27 16 8 N -0.88 -46.57 8.00 21.66 0.17 -46.40 16 9 Si 0.99 44.30 29.55 68.60 2.03 46.33 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.46 23.74 6.55 87.65 0.57 24.32 16 14 O -0.60 -35.84 15.57 -2.86 -0.04 -35.89 16 15 C -0.07 -2.58 2.34 -11.62 -0.03 -2.61 16 16 H 0.09 3.54 6.29 -2.39 -0.02 3.53 16 17 C -0.10 -3.26 6.15 31.51 0.19 -3.06 16 18 C 0.15 4.36 4.21 30.52 0.13 4.49 16 19 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 20 O -0.57 -19.50 12.86 -148.77 -1.91 -21.41 16 21 C -0.14 -4.28 5.80 -19.60 -0.11 -4.39 16 22 C -0.10 -2.46 10.04 22.30 0.22 -2.23 16 23 C -0.12 -2.85 10.05 22.24 0.22 -2.62 16 24 C -0.12 -3.19 10.05 22.24 0.22 -2.96 16 25 C -0.13 -4.56 10.04 22.30 0.22 -4.33 16 26 C -0.08 -2.82 4.97 -19.60 -0.10 -2.91 16 27 H 0.23 7.56 7.80 -4.42 -0.03 7.53 16 28 H 0.09 3.30 6.16 -2.39 -0.01 3.28 16 29 H 0.11 5.20 6.33 -2.39 -0.02 5.18 16 30 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 31 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.07 2.53 7.85 -2.39 -0.02 2.51 16 33 H 0.39 9.74 9.10 -74.05 -0.67 9.06 16 34 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 37 H 0.11 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -76.23 317.36 3.97 -72.27 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.42 Total: 30.92 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 4.98 Total: -19.34 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -1.51 Total: -72.88 kcal Atomic # 8 Polarization: -55.34 SS G_CDS: -1.96 Total: -57.30 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -76.23 3.97 -72.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491663707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.330 kcal (2) G-P(sol) polarization free energy of solvation -76.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds